Wall clock time and date at job start Mon Mar 30 2020 03:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46992 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46962 * 119.99819 * 3 2 1 6 6 H 1.48501 * 109.47244 * 240.00047 * 3 2 1 7 7 C 1.37882 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00118 * 21.55310 * 7 2 1 9 9 C 1.50702 * 119.99704 * 201.54987 * 7 2 1 10 10 O 1.42904 * 109.22205 * 302.62066 * 9 7 2 11 11 C 1.52619 * 109.22511 * 61.97915 * 9 7 2 12 12 C 1.53022 * 110.13340 * 188.65388 * 11 9 7 13 13 S 1.81727 * 108.98054 * 295.48189 * 12 11 9 14 14 C 1.81833 * 102.17295 * 54.80163 * 13 12 11 15 15 C 1.52354 * 109.22361 * 183.22538 * 9 7 2 16 16 C 1.53517 * 113.53167 * 41.67805 * 15 9 7 17 17 C 1.53825 * 87.00139 * 220.05952 * 16 15 9 18 18 C 1.53483 * 113.61252 * 303.89059 * 15 9 7 19 19 H 0.97000 * 120.00541 * 175.99936 * 1 2 3 20 20 H 0.96701 * 113.99742 * 67.72438 * 10 9 7 21 21 H 1.09002 * 109.35905 * 308.86231 * 11 9 7 22 22 H 1.09002 * 109.35589 * 68.45020 * 11 9 7 23 23 H 1.09005 * 109.54833 * 175.63351 * 12 11 9 24 24 H 1.09000 * 109.63480 * 55.38521 * 12 11 9 25 25 H 1.08997 * 109.60204 * 188.62298 * 14 13 12 26 26 H 1.08997 * 109.72886 * 68.22580 * 14 13 12 27 27 H 1.08996 * 113.63024 * 334.58952 * 16 15 9 28 28 H 1.09005 * 113.62529 * 105.53326 * 16 15 9 29 29 H 1.09002 * 113.60712 * 270.66421 * 17 16 15 30 30 H 1.08996 * 113.68220 * 139.79817 * 17 16 15 31 31 H 1.09000 * 113.62763 * 254.39513 * 18 15 9 32 32 H 1.08998 * 113.62048 * 25.33653 * 18 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0044 -1.1941 0.0005 8 1 1.5210 -2.0969 -0.3427 9 6 3.4324 -1.2396 0.4800 10 8 4.2178 -0.3308 -0.2943 11 6 3.4835 -0.8226 1.9472 12 6 4.9364 -0.6532 2.3964 13 16 5.7719 -2.2650 2.3150 14 6 5.4738 -2.7649 0.5923 15 6 3.9769 -2.6512 0.3011 16 6 3.5677 -3.3022 -1.0276 17 6 3.3729 -4.6065 -0.2356 18 6 3.1387 -3.7272 1.0048 19 1 -0.4851 -0.8379 -0.0586 20 1 4.0010 0.6001 -0.1474 21 1 2.9538 0.1218 2.0731 22 1 3.0034 -1.5879 2.5572 23 1 4.9605 -0.2811 3.4207 24 1 5.4429 0.0539 1.7394 25 1 5.7968 -3.7960 0.4497 26 1 6.0280 -2.1116 -0.0815 27 1 2.6434 -2.9018 -1.4439 28 1 4.3759 -3.3509 -1.7574 29 1 4.2731 -5.2180 -0.1734 30 1 2.4946 -5.1760 -0.5392 31 1 3.6013 -4.1181 1.9111 32 1 2.0960 -3.4438 1.1487 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260960117.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:50 Heat of formation + Delta-G solvation = -21.166109 kcal Electronic energy + Delta-G solvation = -15331.468576 eV Core-core repulsion = 12998.182652 eV Total energy + Delta-G solvation = -2333.285924 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66452 -36.15301 -32.53973 -31.96048 -28.86420 -27.48936 -25.02394 -23.32471 -22.50980 -20.42500 -18.20474 -17.08391 -16.26199 -15.90680 -15.02220 -14.43354 -14.26986 -13.60997 -13.29272 -12.86985 -12.65022 -12.19319 -11.91763 -11.54549 -11.43348 -11.30946 -10.89577 -10.74241 -10.31740 -10.18778 -10.02415 -9.69075 -9.48095 -9.14858 -8.97131 -8.62414 -8.19910 -7.19259 -6.62835 -4.28188 2.33925 3.01792 3.08288 3.23955 3.43003 4.24627 4.85461 5.21049 5.25578 5.34435 5.48317 5.53077 5.61170 5.67193 5.83757 5.88439 5.99228 6.15497 6.23106 6.36385 6.48175 6.53881 6.64352 6.78672 6.93344 6.96827 7.03601 7.26361 7.86167 8.20032 8.60351 8.72535 9.40570 10.72241 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.028352 B = 0.014802 C = 0.011497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.355453 B = 1891.176752 C = 2434.769494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.035 3.965 3 Si 1.035 2.965 4 H -0.289 1.289 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.616 4.616 8 H 0.074 0.926 9 C 0.234 3.766 10 O -0.577 6.577 11 C -0.149 4.149 12 C -0.074 4.074 13 S -0.294 6.294 14 C -0.045 4.045 15 C -0.056 4.056 16 C -0.113 4.113 17 C -0.149 4.149 18 C -0.116 4.116 19 H 0.272 0.728 20 H 0.341 0.659 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.814 -3.465 2.067 8.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.172 4.172 3 Si 0.867 3.133 4 H -0.216 1.216 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.653 4.653 8 H 0.092 0.908 9 C 0.195 3.805 10 O -0.389 6.389 11 C -0.188 4.188 12 C -0.222 4.222 13 S -0.067 6.067 14 C -0.193 4.193 15 C -0.057 4.057 16 C -0.152 4.152 17 C -0.187 4.187 18 C -0.153 4.153 19 H 0.082 0.918 20 H 0.192 0.808 21 H 0.090 0.910 22 H 0.094 0.906 23 H 0.108 0.892 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.121 0.879 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.443 -2.916 2.752 9.347 hybrid contribution -0.677 -0.434 -0.761 1.107 sum 7.766 -3.350 1.991 8.689 Atomic orbital electron populations 1.70839 1.06953 1.31156 1.43193 1.25685 0.96207 1.02319 0.93002 0.84375 0.75231 0.76666 0.76995 1.21623 1.20354 1.20381 1.22387 0.96568 0.97409 1.48908 0.90824 1.18965 0.90553 0.85136 0.85880 1.86594 1.65140 1.17553 1.69612 1.22756 0.92489 1.03073 1.00502 1.23432 0.99855 0.94893 1.03996 1.86225 1.73957 1.27285 1.19216 1.23163 0.99094 1.03310 0.93690 1.21413 0.91526 0.94939 0.97841 1.22963 1.02425 0.94523 0.95335 1.22901 1.00469 0.96739 0.98542 1.22916 1.01270 0.95006 0.96145 0.91803 0.80778 0.90979 0.90619 0.89247 0.90150 0.89137 0.89564 0.87896 0.93044 0.91468 0.92256 0.91848 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.70 55.43 0.76 -24.86 16 2 C 0.04 0.95 5.19 -17.82 -0.09 0.86 16 3 Si 1.04 23.66 23.62 -169.99 -4.02 19.65 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.28 -5.69 5.79 56.52 0.33 -5.36 16 6 H -0.28 -6.09 6.77 56.52 0.38 -5.71 16 7 C -0.62 -15.88 6.84 -34.44 -0.24 -16.12 16 8 H 0.07 2.01 5.61 -52.49 -0.29 1.71 16 9 C 0.23 5.26 0.29 -92.30 -0.03 5.23 16 10 O -0.58 -13.37 10.78 -35.23 -0.38 -13.75 16 11 C -0.15 -3.14 4.36 -26.91 -0.12 -3.26 16 12 C -0.07 -1.36 6.27 37.17 0.23 -1.12 16 13 S -0.29 -5.26 21.83 -107.50 -2.35 -7.60 16 14 C -0.04 -0.80 5.33 37.11 0.20 -0.61 16 15 C -0.06 -1.10 0.44 -154.36 -0.07 -1.17 16 16 C -0.11 -2.18 6.87 -26.03 -0.18 -2.36 16 17 C -0.15 -2.48 7.72 -25.87 -0.20 -2.68 16 18 C -0.12 -2.16 5.95 -26.05 -0.15 -2.32 16 19 H 0.27 7.79 8.73 -40.82 -0.36 7.43 16 20 H 0.34 7.59 3.32 45.56 0.15 7.74 16 21 H 0.07 1.59 4.76 -51.93 -0.25 1.34 16 22 H 0.08 1.61 7.42 -51.93 -0.39 1.23 16 23 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 24 H 0.08 1.48 7.37 -51.93 -0.38 1.10 16 25 H 0.09 1.46 7.26 -51.93 -0.38 1.08 16 26 H 0.09 1.60 7.77 -51.93 -0.40 1.20 16 27 H 0.10 2.24 5.83 -51.93 -0.30 1.94 16 28 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 29 H 0.07 0.99 7.57 -51.93 -0.39 0.60 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.13 7.74 -51.93 -0.40 0.72 16 32 H 0.09 1.95 6.79 -51.93 -0.35 1.59 16 LS Contribution 243.37 15.07 3.67 3.67 Total: -1.00 -27.28 243.37 -6.86 -34.13 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -3.90 Total: 12.30 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -0.64 Total: -23.54 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.76 Total: -24.86 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.38 Total: -13.75 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.02 Total: 19.65 kcal Atomic # 16 Polarization: -5.26 SS G_CDS: -2.35 Total: -7.60 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.28 -6.86 -34.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260960117.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.967 kcal (2) G-P(sol) polarization free energy of solvation -27.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds