Wall clock time and date at job start Mon Mar 30 2020 03:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 N 1.40078 * 126.03740 * 269.68702 * 3 2 1 5 5 C 1.30852 * 108.22620 * 179.87932 * 4 3 2 6 6 C 1.39935 * 108.20842 * 0.38324 * 5 4 3 7 7 Cl 1.73602 * 126.04357 * 179.79013 * 6 5 4 8 8 C 1.35041 * 126.03366 * 90.00244 * 3 2 1 9 9 C 1.50699 * 126.13742 * 359.93865 * 8 3 2 10 10 H 1.08999 * 109.47426 * 0.02562 * 9 8 3 11 11 C 1.53003 * 109.46991 * 239.99939 * 9 8 3 12 12 C 1.50699 * 109.46968 * 120.00391 * 9 8 3 13 13 H 1.08002 * 120.00661 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99930 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00268 * 359.97438 * 14 12 9 16 16 Si 1.86807 * 120.00254 * 179.97438 * 14 12 9 17 17 H 1.48505 * 109.46685 * 59.99618 * 16 14 12 18 18 H 1.48491 * 109.47408 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46720 * 300.00107 * 16 14 12 20 20 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 21 21 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 22 22 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 24 24 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 25 25 H 1.08001 * 125.89747 * 180.13310 * 5 4 3 26 26 H 1.08995 * 109.47064 * 60.00327 * 11 9 8 27 27 H 1.09006 * 109.46806 * 179.97438 * 11 9 8 28 28 H 1.08998 * 109.47541 * 299.99905 * 11 9 8 29 29 H 0.96999 * 120.00326 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2988 2.1562 -1.1327 5 6 2.7095 3.3324 -0.7325 6 6 2.7123 3.3417 0.6668 7 17 3.1821 4.6719 1.6785 8 6 2.2831 2.1302 1.0920 9 6 2.1282 1.6956 2.5267 10 1 1.7646 0.6686 2.5580 11 6 1.1276 2.6132 3.2322 12 6 3.4621 1.7772 3.2231 13 1 4.3350 2.1100 2.6810 14 6 3.5685 1.4259 4.5521 15 7 2.5059 1.0201 5.2122 16 14 5.2222 1.5263 5.4153 17 1 5.7184 2.9254 5.3731 18 1 5.0695 1.0982 6.8289 19 1 6.1930 0.6359 4.7300 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5140 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 3.0004 4.1528 -1.3717 26 1 0.1628 2.5542 2.7286 27 1 1.0152 2.2985 4.2698 28 1 1.4916 3.6401 3.2011 29 1 2.5808 0.7726 6.1471 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261213479.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:56 Heat of formation + Delta-G solvation = 56.272546 kcal Electronic energy + Delta-G solvation = -14133.234891 eV Core-core repulsion = 11697.722910 eV Total energy + Delta-G solvation = -2435.511981 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 228.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65084 -35.51454 -34.55934 -33.78849 -31.21142 -28.97774 -27.73957 -25.18107 -23.44492 -21.98755 -20.42312 -18.72999 -16.43270 -16.15736 -14.71594 -14.66576 -14.45098 -13.74949 -13.15852 -12.88593 -12.43347 -12.16854 -11.80820 -11.59120 -11.10106 -11.08192 -10.95438 -10.82016 -10.72282 -10.49422 -10.13549 -9.74538 -9.64089 -9.06574 -8.55854 -8.40530 -7.49772 -6.07002 -4.12255 2.51587 2.74959 3.31127 3.31820 3.35214 3.41106 3.61718 4.41171 4.99604 5.24673 5.29971 5.40481 5.54103 5.60432 5.84343 5.95065 6.23164 6.28751 6.41461 6.81029 6.97235 7.05429 7.06943 7.49628 7.64896 7.78852 8.01168 8.20542 8.32507 8.88289 9.51985 10.99309 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.024597 B = 0.011527 C = 0.009238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.075469 B = 2428.474589 C = 3030.185658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.133 3.867 3 N -0.372 5.372 4 N -0.317 5.317 5 C 0.055 3.945 6 C -0.201 4.201 7 Cl -0.048 7.048 8 C 0.159 3.841 9 C 0.098 3.902 10 H 0.037 0.963 11 C -0.135 4.135 12 C -0.498 4.498 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.891 5.891 16 Si 0.894 3.106 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.065 0.935 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.179 0.821 26 H 0.005 0.995 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 0.584 -7.090 7.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.011 3.989 3 N -0.155 5.155 4 N -0.138 5.138 5 C -0.131 4.131 6 C -0.239 4.239 7 Cl -0.020 7.020 8 C 0.030 3.970 9 C 0.078 3.922 10 H 0.055 0.945 11 C -0.193 4.193 12 C -0.537 4.537 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.530 5.530 16 Si 0.722 3.278 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.084 0.916 21 H 0.078 0.922 22 H 0.091 0.909 23 H 0.106 0.894 24 H 0.118 0.882 25 H 0.196 0.804 26 H 0.024 0.976 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.683 -0.263 -7.865 8.314 hybrid contribution 1.130 0.704 1.211 1.799 sum -1.553 0.441 -6.654 6.847 Atomic orbital electron populations 1.22173 0.94737 1.02607 1.03086 1.21600 0.94877 0.78088 1.04307 1.48366 1.51820 1.11920 1.03362 1.77218 1.23989 1.03590 1.08976 1.23624 1.00159 0.95995 0.93324 1.20237 1.20423 0.92721 0.90474 1.98263 1.91269 1.44132 1.68344 1.21972 0.92814 0.89788 0.92408 1.17662 0.97339 0.95871 0.81296 0.94463 1.21822 0.94623 0.99666 1.03211 1.20873 0.92935 1.44641 0.95263 0.92073 1.24867 0.96662 0.94904 0.97157 1.69858 1.28283 1.44778 1.10089 0.86601 0.84059 0.78767 0.78360 1.19988 1.21290 1.20304 0.91558 0.92202 0.90867 0.89412 0.88198 0.80433 0.97567 0.89114 0.93492 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 15 2 C 0.13 2.09 6.83 -4.04 -0.03 2.06 15 3 N -0.37 -7.33 3.61 -57.10 -0.21 -7.54 15 4 N -0.32 -6.18 12.57 30.64 0.39 -5.79 15 5 C 0.06 1.03 12.02 -17.33 -0.21 0.82 15 6 C -0.20 -4.20 6.36 -39.97 -0.25 -4.46 15 7 Cl -0.05 -0.97 26.55 -51.86 -1.38 -2.35 15 8 C 0.16 3.49 5.62 -82.20 -0.46 3.03 15 9 C 0.10 2.36 2.44 -92.92 -0.23 2.13 15 10 H 0.04 0.92 6.75 -51.93 -0.35 0.57 15 11 C -0.13 -3.18 8.82 37.16 0.33 -2.85 15 12 C -0.50 -13.09 7.77 -34.44 -0.27 -13.36 15 13 H 0.06 1.66 7.71 -52.49 -0.40 1.25 15 14 C 0.07 1.74 5.30 -17.82 -0.09 1.64 15 15 N -0.89 -24.19 11.32 55.43 0.63 -23.57 15 16 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 15 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 18 H -0.29 -6.66 7.11 56.52 0.40 -6.25 15 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 20 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 21 H 0.06 0.82 8.14 -51.92 -0.42 0.40 15 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.10 1.61 7.05 -51.93 -0.37 1.24 15 25 H 0.18 2.63 8.06 -52.49 -0.42 2.21 15 26 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 15 27 H 0.09 2.32 6.07 -51.93 -0.32 2.00 15 28 H 0.05 1.09 6.14 -51.93 -0.32 0.77 15 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 15 LS Contribution 261.12 15.07 3.94 3.94 Total: -1.00 -28.34 261.12 -5.92 -34.26 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -3.43 Total: -1.99 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.83 Total: -12.90 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.81 Total: -36.90 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.38 Total: -2.35 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.34 -5.92 -34.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213479.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.530 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds