Wall clock time and date at job start Mon Mar 30 2020 03:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 N 1.40078 * 126.03740 * 269.68702 * 3 2 1 5 5 C 1.30852 * 108.22620 * 179.87932 * 4 3 2 6 6 C 1.39935 * 108.20842 * 0.38324 * 5 4 3 7 7 Cl 1.73602 * 126.04357 * 179.79013 * 6 5 4 8 8 C 1.35041 * 126.03366 * 90.00244 * 3 2 1 9 9 C 1.50699 * 126.13742 * 359.93865 * 8 3 2 10 10 H 1.08999 * 109.47426 * 0.02562 * 9 8 3 11 11 C 1.53003 * 109.46991 * 239.99939 * 9 8 3 12 12 C 1.50699 * 109.46968 * 120.00391 * 9 8 3 13 13 H 1.08002 * 120.00661 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99930 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00268 * 359.97438 * 14 12 9 16 16 Si 1.86807 * 120.00254 * 179.97438 * 14 12 9 17 17 H 1.48505 * 109.46685 * 59.99618 * 16 14 12 18 18 H 1.48491 * 109.47408 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46720 * 300.00107 * 16 14 12 20 20 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 21 21 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 22 22 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 24 24 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 25 25 H 1.08001 * 125.89747 * 180.13310 * 5 4 3 26 26 H 1.08995 * 109.47064 * 60.00327 * 11 9 8 27 27 H 1.09006 * 109.46806 * 179.97438 * 11 9 8 28 28 H 1.08998 * 109.47541 * 299.99905 * 11 9 8 29 29 H 0.96999 * 120.00326 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2988 2.1562 -1.1327 5 6 2.7095 3.3324 -0.7325 6 6 2.7123 3.3417 0.6668 7 17 3.1821 4.6719 1.6785 8 6 2.2831 2.1302 1.0920 9 6 2.1282 1.6956 2.5267 10 1 1.7646 0.6686 2.5580 11 6 1.1276 2.6132 3.2322 12 6 3.4621 1.7772 3.2231 13 1 4.3350 2.1100 2.6810 14 6 3.5685 1.4259 4.5521 15 7 2.5059 1.0201 5.2122 16 14 5.2222 1.5263 5.4153 17 1 5.7184 2.9254 5.3731 18 1 5.0695 1.0982 6.8289 19 1 6.1930 0.6359 4.7300 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5140 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 3.0004 4.1528 -1.3717 26 1 0.1628 2.5542 2.7286 27 1 1.0152 2.2985 4.2698 28 1 1.4916 3.6401 3.2011 29 1 2.5808 0.7726 6.1471 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261213479.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:56 Heat of formation + Delta-G solvation = 40.580567 kcal Electronic energy + Delta-G solvation = -14133.915347 eV Core-core repulsion = 11697.722910 eV Total energy + Delta-G solvation = -2436.192437 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 228.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.18867 -37.11139 -36.38614 -35.18954 -33.10517 -30.38779 -29.38697 -27.19811 -24.75806 -23.77624 -21.91802 -20.34164 -18.26545 -17.90024 -16.50224 -16.14114 -15.97658 -15.21862 -14.71671 -14.55007 -13.93676 -13.74454 -13.46990 -12.98219 -12.91001 -12.80444 -12.62398 -12.44457 -12.31074 -12.20597 -11.96928 -11.50564 -11.40897 -10.88061 -10.41400 -10.12713 -9.10143 -8.09140 -6.19665 0.94242 1.25956 1.44359 1.46231 1.53067 1.77402 2.08849 2.46958 3.20583 3.68983 3.97914 4.12131 4.15153 4.35963 4.48266 4.70976 4.79665 4.88018 4.98017 5.13081 5.18430 5.19880 5.55617 5.58502 5.82499 5.94912 6.10677 6.31522 6.73012 6.83308 7.46642 8.95923 Molecular weight = 228.07amu Principal moments of inertia in cm(-1) A = 0.024597 B = 0.011527 C = 0.009238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.075469 B = 2428.474589 C = 3030.185658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 N -0.373 5.373 4 N -0.319 5.319 5 C 0.061 3.939 6 C -0.213 4.213 7 Cl -0.048 7.048 8 C 0.134 3.866 9 C 0.104 3.896 10 H 0.023 0.977 11 C -0.125 4.125 12 C -0.506 4.506 13 H 0.049 0.951 14 C 0.026 3.974 15 N -0.912 5.912 16 Si 0.945 3.055 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.275 1.275 20 H 0.044 0.956 21 H 0.061 0.939 22 H 0.105 0.895 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.215 0.785 26 H 0.019 0.981 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 0.550 -8.105 8.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 N -0.155 5.155 4 N -0.139 5.139 5 C -0.125 4.125 6 C -0.251 4.251 7 Cl -0.020 7.020 8 C 0.004 3.996 9 C 0.084 3.916 10 H 0.041 0.959 11 C -0.183 4.183 12 C -0.544 4.544 13 H 0.067 0.933 14 C -0.174 4.174 15 N -0.551 5.551 16 Si 0.771 3.229 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.200 1.200 20 H 0.063 0.937 21 H 0.080 0.920 22 H 0.123 0.877 23 H 0.129 0.871 24 H 0.109 0.891 25 H 0.232 0.768 26 H 0.038 0.962 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.459 -0.312 -8.888 9.227 hybrid contribution 1.042 0.701 1.477 1.939 sum -1.417 0.390 -7.410 7.555 Atomic orbital electron populations 1.22108 0.93035 1.04412 1.02022 1.21933 0.96295 0.76557 1.05027 1.48690 1.51325 1.12830 1.02692 1.77200 1.23891 1.03946 1.08884 1.24148 0.99095 0.96583 0.92664 1.20514 1.20417 0.92504 0.91628 1.98256 1.91247 1.43989 1.68550 1.21702 0.94807 0.90945 0.92123 1.17421 0.96274 0.95113 0.82802 0.95889 1.21664 0.95349 0.99335 1.01962 1.21006 0.93544 1.44363 0.95529 0.93298 1.25476 0.99285 0.94822 0.97785 1.69953 1.29597 1.45344 1.10240 0.85806 0.80885 0.78575 0.77628 1.20013 1.20745 1.19991 0.93658 0.92037 0.87668 0.87062 0.89065 0.76824 0.96224 0.91304 0.93675 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 10.24 71.98 0.74 -3.31 15 2 C 0.12 3.67 6.83 86.38 0.59 4.26 15 3 N -0.37 -14.22 3.61 -334.57 -1.21 -15.43 15 4 N -0.32 -11.72 12.57 -56.97 -0.72 -12.44 15 5 C 0.06 2.14 12.02 85.25 1.02 3.16 15 6 C -0.21 -8.65 6.36 22.02 0.14 -8.51 15 7 Cl -0.05 -1.92 26.55 -2.72 -0.07 -1.99 15 8 C 0.13 5.79 5.62 41.40 0.23 6.02 15 9 C 0.10 5.01 2.44 -12.29 -0.03 4.98 15 10 H 0.02 1.16 6.75 -2.39 -0.02 1.14 15 11 C -0.12 -5.90 8.82 71.98 0.64 -5.26 15 12 C -0.51 -26.62 7.77 25.60 0.20 -26.42 15 13 H 0.05 2.65 7.71 -2.91 -0.02 2.63 15 14 C 0.03 1.36 5.30 84.65 0.45 1.81 15 15 N -0.91 -49.73 11.32 21.45 0.24 -49.49 15 16 Si 0.94 42.71 29.54 68.60 2.03 44.74 15 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 18 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 20 H 0.04 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.06 1.55 8.14 -2.38 -0.02 1.53 15 22 H 0.10 2.00 8.14 -2.39 -0.02 1.98 15 23 H 0.11 2.80 8.14 -2.39 -0.02 2.78 15 24 H 0.09 2.90 7.05 -2.39 -0.02 2.88 15 25 H 0.22 5.62 8.06 -2.91 -0.02 5.59 15 26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 15 27 H 0.07 3.55 6.07 -2.38 -0.01 3.54 15 28 H 0.04 2.10 6.14 -2.39 -0.01 2.08 15 29 H 0.26 13.75 8.31 -92.71 -0.77 12.98 15 Total: -1.00 -58.86 261.12 5.39 -53.47 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.15 Total: 4.41 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 3.98 Total: -23.28 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -1.68 Total: -77.35 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.07 Total: -1.99 kcal Total: -58.86 5.39 -53.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213479.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.048 kcal (2) G-P(sol) polarization free energy of solvation -58.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds