Wall clock time and date at job start Mon Mar 30 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 120.00067 * 2 1 4 4 H 1.48504 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47525 * 300.00825 * 3 2 1 6 6 H 1.48507 * 109.46919 * 60.00710 * 3 2 1 7 7 C 1.39932 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00052 * 163.88889 * 7 2 1 9 9 C 1.41401 * 119.99889 * 343.88422 * 7 2 1 10 10 C 1.40602 * 120.20799 * 333.91250 * 9 7 2 11 11 C 1.38279 * 119.67684 * 180.02562 * 10 9 7 12 12 N 1.39685 * 119.95334 * 179.97438 * 11 10 9 13 13 N 1.36600 * 120.00172 * 180.02562 * 12 11 10 14 14 C 1.39334 * 120.09441 * 359.97438 * 11 10 9 15 15 C 1.38479 * 120.42709 * 0.02562 * 14 11 10 16 16 C 1.37679 * 120.32262 * 0.25599 * 15 14 11 17 17 C 1.50703 * 120.05204 * 179.74835 * 16 15 14 18 18 F 1.39896 * 109.47074 * 119.99961 * 17 16 15 19 19 F 1.39904 * 109.47082 * 239.99495 * 17 16 15 20 20 H 0.97001 * 119.99936 * 359.97438 * 1 2 3 21 21 H 1.08001 * 120.16332 * 0.04285 * 10 9 7 22 22 H 0.97003 * 119.99494 * 0.02562 * 12 11 10 23 23 H 1.00898 * 111.00166 * 56.03967 * 13 12 11 24 24 H 1.00896 * 111.00066 * 180.02562 * 13 12 11 25 25 H 1.08003 * 119.78701 * 179.97438 * 14 11 10 26 26 H 1.08002 * 119.83688 * 179.97438 * 15 14 11 27 27 H 1.08992 * 109.47177 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3464 -0.0006 5 1 1.8835 2.3966 -1.2123 6 1 1.8837 2.3963 1.2127 7 6 2.0080 -1.2118 -0.0005 8 1 3.0562 -1.2301 -0.2601 9 6 1.3426 -2.4125 0.3388 10 6 0.2117 -2.3829 1.1737 11 6 -0.4302 -3.5637 1.4990 12 7 -1.5540 -3.5411 2.3284 13 7 -2.1886 -4.7070 2.6508 14 6 0.0423 -4.7761 1.0006 15 6 1.1558 -4.8099 0.1781 16 6 1.8117 -3.6454 -0.1522 17 6 3.0262 -3.6899 -1.0433 18 9 2.7881 -2.9314 -2.1944 19 9 4.1269 -3.1644 -0.3580 20 1 -0.4850 0.8401 0.0004 21 1 -0.1541 -1.4425 1.5588 22 1 -1.8837 -2.6974 2.6754 23 1 -1.5482 -5.3623 3.0733 24 1 -2.9791 -4.5338 3.2532 25 1 -0.4627 -5.6954 1.2582 26 1 1.5141 -5.7550 -0.2025 27 1 3.2329 -4.7225 -1.3245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306823727.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:10 Heat of formation + Delta-G solvation = -60.663646 kcal Electronic energy + Delta-G solvation = -15738.984712 eV Core-core repulsion = 12746.605317 eV Total energy + Delta-G solvation = -2992.379395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.72705 -45.69980 -38.09386 -35.76178 -33.54288 -30.63619 -29.61898 -27.12092 -25.32453 -23.56388 -21.35240 -19.79225 -17.49648 -17.24655 -15.97339 -15.94747 -15.81993 -15.68684 -14.93032 -14.12668 -13.04728 -12.87477 -12.68842 -12.51564 -12.25610 -12.11963 -12.01275 -11.40547 -11.15157 -10.98681 -10.73947 -10.37496 -10.30049 -9.59017 -9.34171 -9.16742 -8.30130 -7.41413 -6.78873 -6.17460 -4.40790 2.79774 2.92071 3.10247 3.18222 3.27134 3.85269 3.97198 4.64003 4.95923 5.51520 5.58260 5.64564 5.95621 6.23383 6.39677 6.58321 6.82339 7.02998 7.12324 7.30404 7.41159 7.77054 7.84806 7.90337 8.08840 8.40499 8.69776 8.88909 8.94171 9.03497 10.18247 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.021138 B = 0.012388 C = 0.008371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.335386 B = 2259.730033 C = 3344.181420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.450 4.450 8 H 0.088 0.912 9 C 0.171 3.829 10 C -0.232 4.232 11 C 0.236 3.764 12 N -0.614 5.614 13 N -0.601 5.601 14 C -0.288 4.288 15 C -0.029 4.029 16 C -0.320 4.320 17 C 0.336 3.664 18 F -0.209 7.209 19 F -0.216 7.216 20 H 0.279 0.721 21 H 0.120 0.880 22 H 0.394 0.606 23 H 0.322 0.678 24 H 0.340 0.660 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 -3.875 3.184 5.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.479 4.479 8 H 0.106 0.894 9 C 0.167 3.833 10 C -0.257 4.257 11 C 0.136 3.864 12 N -0.341 5.341 13 N -0.224 5.224 14 C -0.310 4.310 15 C -0.048 4.048 16 C -0.323 4.323 17 C 0.283 3.717 18 F -0.190 7.190 19 F -0.197 7.197 20 H 0.090 0.910 21 H 0.138 0.862 22 H 0.230 0.770 23 H 0.136 0.864 24 H 0.152 0.848 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.592 -3.934 2.388 4.640 hybrid contribution 0.269 1.325 1.158 1.781 sum -0.323 -2.608 3.546 4.414 Atomic orbital electron populations 1.69870 1.07587 1.29005 1.34626 1.25934 0.94700 1.01415 0.92002 0.86273 0.81348 0.80819 0.78447 1.18137 1.19907 1.19801 1.19827 0.98107 0.90776 1.39183 0.89424 1.16940 0.89323 0.90887 0.86113 1.20620 1.02488 0.94979 1.07662 1.17580 0.84720 0.94691 0.89365 1.43273 1.33017 1.02149 1.55660 1.60150 1.08694 1.03184 1.50390 1.19794 1.03595 0.95349 1.12306 1.20049 0.94144 0.95150 0.95417 1.19918 1.03963 0.95616 1.12786 1.19906 0.83044 0.89992 0.78799 1.92937 1.94852 1.79729 1.51511 1.92897 1.56697 1.89259 1.80874 0.91040 0.86181 0.76960 0.86362 0.84801 0.88353 0.88876 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.32 10.96 55.55 0.61 -19.71 15 2 C 0.08 1.99 5.16 -17.34 -0.09 1.90 15 3 Si 0.91 19.21 29.59 -169.99 -5.03 14.18 15 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.27 -5.59 7.11 56.52 0.40 -5.18 15 7 C -0.45 -12.19 7.80 -37.74 -0.29 -12.48 15 8 H 0.09 2.39 6.05 -52.48 -0.32 2.08 15 9 C 0.17 4.59 5.54 -106.85 -0.59 4.00 15 10 C -0.23 -5.94 8.52 -38.68 -0.33 -6.27 15 11 C 0.24 5.41 6.69 -83.86 -0.56 4.85 15 12 N -0.61 -11.50 6.65 32.37 0.22 -11.29 15 13 N -0.60 -9.17 9.59 60.35 0.58 -8.59 15 14 C -0.29 -6.37 9.37 -39.08 -0.37 -6.74 15 15 C -0.03 -0.63 9.64 -39.70 -0.38 -1.01 15 16 C -0.32 -7.78 5.42 -103.87 -0.56 -8.34 15 17 C 0.34 7.37 4.95 36.01 0.18 7.55 15 18 F -0.21 -4.97 16.49 2.25 0.04 -4.93 15 19 F -0.22 -4.93 15.72 2.25 0.04 -4.89 15 20 H 0.28 6.53 8.30 -40.82 -0.34 6.19 15 21 H 0.12 3.14 6.21 -52.49 -0.33 2.81 15 22 H 0.39 6.79 8.84 -185.15 -1.64 5.15 15 23 H 0.32 4.59 8.43 -181.37 -1.53 3.06 15 24 H 0.34 3.94 9.21 -181.37 -1.67 2.27 15 25 H 0.10 1.98 7.02 -52.48 -0.37 1.61 15 26 H 0.09 1.72 7.93 -52.49 -0.42 1.30 15 27 H 0.08 1.49 7.87 -51.93 -0.41 1.08 15 LS Contribution 243.26 15.07 3.67 3.67 Total: -1.00 -29.45 243.26 -8.69 -38.14 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -5.80 Total: 9.97 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -3.00 Total: -16.54 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 1.40 Total: -39.59 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.82 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.45 -8.69 -38.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306823727.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.524 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds