Wall clock time and date at job start Mon Mar 30 2020 03:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86800 * 119.99724 * 2 1 4 4 H 1.48502 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46836 * 299.99332 * 3 2 1 6 6 H 1.48501 * 109.47313 * 59.99650 * 3 2 1 7 7 C 1.39923 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99858 * 163.77630 * 7 2 1 9 9 C 1.41049 * 120.00446 * 343.77919 * 7 2 1 10 10 C 1.41579 * 120.30160 * 313.03511 * 9 7 2 11 11 N 1.38730 * 120.29496 * 359.73971 * 10 9 7 12 12 N 1.36600 * 120.00090 * 174.44333 * 11 10 9 13 13 C 1.38712 * 119.40911 * 179.72486 * 10 9 7 14 14 C 1.38209 * 120.02768 * 359.97438 * 13 10 9 15 15 C 1.38859 * 120.62660 * 0.02562 * 14 13 10 16 16 C 1.36485 * 120.59476 * 359.97438 * 15 14 13 17 17 C 1.50705 * 120.02483 * 180.02562 * 16 15 14 18 18 F 1.39897 * 109.46776 * 22.11087 * 17 16 15 19 19 F 1.39898 * 109.47214 * 142.11446 * 17 16 15 20 20 H 0.96993 * 119.99903 * 5.04676 * 1 2 3 21 21 H 0.97006 * 120.00177 * 354.44410 * 11 10 9 22 22 H 1.00896 * 111.00098 * 180.02562 * 12 11 10 23 23 H 1.00899 * 110.99701 * 303.95496 * 12 11 10 24 24 H 1.08002 * 119.98882 * 179.97438 * 13 10 9 25 25 H 1.08000 * 119.69058 * 180.02562 * 14 13 10 26 26 H 1.07995 * 119.70295 * 180.02562 * 15 14 13 27 27 H 1.09004 * 109.46829 * 262.12031 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8840 2.3963 -1.2126 6 1 1.8839 2.3965 1.2124 7 6 2.0085 -1.2118 0.0005 8 1 3.0562 -1.2304 -0.2608 9 6 1.3455 -2.4089 0.3423 10 6 0.5177 -2.4646 1.4895 11 7 0.3557 -1.3437 2.2907 12 7 -0.5308 -1.3690 3.3297 13 6 -0.1301 -3.6498 1.8052 14 6 0.0345 -4.7629 1.0026 15 6 0.8461 -4.7098 -0.1229 16 6 1.4954 -3.5568 -0.4572 17 6 2.3726 -3.5133 -1.6820 18 9 1.9939 -4.5318 -2.5631 19 9 2.2303 -2.2732 -2.3136 20 1 -0.4849 0.8367 -0.0739 21 1 0.8720 -0.5419 2.1132 22 1 -0.5398 -0.4867 3.8189 23 1 -1.4558 -1.6142 3.0097 24 1 -0.7634 -3.7029 2.6784 25 1 -0.4727 -5.6829 1.2532 26 1 0.9638 -5.5884 -0.7397 27 1 3.4129 -3.6547 -1.3889 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307268844.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:13 Heat of formation + Delta-G solvation = -52.330719 kcal Electronic energy + Delta-G solvation = -16105.413109 eV Core-core repulsion = 13113.395057 eV Total energy + Delta-G solvation = -2992.018053 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.84644 -45.81934 -38.25800 -35.34008 -33.59649 -30.49712 -29.92266 -26.49424 -25.39749 -24.13764 -20.86153 -19.80615 -17.86520 -16.54751 -16.49837 -16.15953 -15.74549 -15.09746 -14.87771 -14.12740 -13.57284 -13.01905 -12.72768 -12.55160 -12.16740 -12.10255 -11.81490 -11.35351 -11.29479 -11.13541 -10.67138 -10.52847 -10.17233 -10.04232 -9.36373 -9.11547 -8.11626 -7.45844 -6.72431 -5.87948 -4.32656 2.63512 2.91874 3.04815 3.11551 3.12423 3.94529 4.27958 4.62239 4.91397 5.30609 5.54363 5.88994 5.95759 6.11765 6.29380 6.57346 6.63824 6.96248 7.24289 7.28471 7.29768 7.61145 7.76492 7.92656 8.09684 8.34495 8.58255 8.84700 9.04605 9.45786 10.27007 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.015445 C = 0.009466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.061487 B = 1812.420781 C = 2957.273748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.070 3.930 3 Si 0.895 3.105 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.474 4.474 8 H 0.080 0.920 9 C 0.098 3.902 10 C 0.192 3.808 11 N -0.576 5.576 12 N -0.602 5.602 13 C -0.174 4.174 14 C -0.170 4.170 15 C -0.125 4.125 16 C -0.224 4.224 17 C 0.330 3.670 18 F -0.222 7.222 19 F -0.191 7.191 20 H 0.275 0.725 21 H 0.402 0.598 22 H 0.337 0.663 23 H 0.316 0.684 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.305 -0.923 2.074 2.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.507 4.507 8 H 0.098 0.902 9 C 0.092 3.908 10 C 0.088 3.912 11 N -0.303 5.303 12 N -0.223 5.223 13 C -0.198 4.198 14 C -0.190 4.190 15 C -0.146 4.146 16 C -0.227 4.227 17 C 0.277 3.723 18 F -0.203 7.203 19 F -0.172 7.172 20 H 0.085 0.915 21 H 0.243 0.757 22 H 0.148 0.852 23 H 0.130 0.870 24 H 0.120 0.880 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.442 -1.325 2.522 3.193 hybrid contribution -0.301 2.068 -0.751 2.221 sum 1.141 0.743 1.771 2.234 Atomic orbital electron populations 1.69870 1.06982 1.28595 1.38517 1.25665 0.94642 1.00326 0.93716 0.86442 0.81311 0.81797 0.78398 1.18393 1.20051 1.20238 1.19113 0.97645 0.90393 1.43526 0.90158 1.16736 0.92933 0.92214 0.88897 1.17716 0.98529 0.85424 0.89511 1.42919 1.41551 1.14973 1.30825 1.60417 1.08618 1.35791 1.17511 1.20209 1.05347 0.92686 1.01565 1.20228 1.03620 0.97305 0.97800 1.19912 0.99914 0.96591 0.98160 1.19711 1.08089 0.97252 0.97670 1.19906 0.98400 0.70984 0.83056 1.92866 1.93763 1.61304 1.72400 1.92995 1.97280 1.43318 1.83637 0.91489 0.75731 0.85237 0.86964 0.87987 0.88715 0.88545 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.42 11.57 55.55 0.64 -19.77 15 2 C 0.07 1.70 3.51 -17.33 -0.06 1.63 15 3 Si 0.90 18.40 29.59 -169.99 -5.03 13.37 15 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 6 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.47 -11.97 6.21 -37.89 -0.24 -12.21 15 8 H 0.08 2.00 7.64 -52.49 -0.40 1.60 15 9 C 0.10 2.49 5.22 -106.63 -0.56 1.93 15 10 C 0.19 4.67 6.19 -83.29 -0.52 4.15 15 11 N -0.58 -12.73 5.49 32.72 0.18 -12.55 15 12 N -0.60 -10.90 9.49 60.35 0.57 -10.33 15 13 C -0.17 -3.95 9.35 -39.42 -0.37 -4.32 15 14 C -0.17 -3.71 10.04 -39.36 -0.40 -4.11 15 15 C -0.13 -2.82 9.34 -39.98 -0.37 -3.19 15 16 C -0.22 -5.36 5.74 -104.33 -0.60 -5.96 15 17 C 0.33 7.15 5.30 36.01 0.19 7.34 15 18 F -0.22 -4.66 16.24 2.25 0.04 -4.63 15 19 F -0.19 -4.59 15.03 2.25 0.03 -4.56 15 20 H 0.27 6.45 8.30 -40.82 -0.34 6.12 15 21 H 0.40 9.10 5.99 -185.15 -1.11 7.99 15 22 H 0.34 5.10 9.21 -181.37 -1.67 3.43 15 23 H 0.32 5.59 8.67 -181.37 -1.57 4.02 15 24 H 0.10 2.14 7.19 -52.49 -0.38 1.76 15 25 H 0.09 1.80 8.06 -52.49 -0.42 1.38 15 26 H 0.10 1.97 7.36 -52.49 -0.39 1.59 15 27 H 0.09 1.69 8.14 -51.93 -0.42 1.27 15 LS Contribution 240.18 15.07 3.62 3.62 Total: -1.00 -27.45 240.18 -8.35 -35.80 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -5.50 Total: 13.76 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.91 Total: -14.72 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 1.39 Total: -42.65 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 0.07 Total: -9.19 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.45 -8.35 -35.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307268844.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.529 kcal (2) G-P(sol) polarization free energy of solvation -27.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds