Wall clock time and date at job start Mon Mar 30 2020 03:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86800 * 119.99724 * 2 1 4 4 H 1.48502 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46836 * 299.99332 * 3 2 1 6 6 H 1.48501 * 109.47313 * 59.99650 * 3 2 1 7 7 C 1.39923 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99858 * 163.77630 * 7 2 1 9 9 C 1.41049 * 120.00446 * 343.77919 * 7 2 1 10 10 C 1.41579 * 120.30160 * 313.03511 * 9 7 2 11 11 N 1.38730 * 120.29496 * 359.73971 * 10 9 7 12 12 N 1.36600 * 120.00090 * 174.44333 * 11 10 9 13 13 C 1.38712 * 119.40911 * 179.72486 * 10 9 7 14 14 C 1.38209 * 120.02768 * 359.97438 * 13 10 9 15 15 C 1.38859 * 120.62660 * 0.02562 * 14 13 10 16 16 C 1.36485 * 120.59476 * 359.97438 * 15 14 13 17 17 C 1.50705 * 120.02483 * 180.02562 * 16 15 14 18 18 F 1.39897 * 109.46776 * 22.11087 * 17 16 15 19 19 F 1.39898 * 109.47214 * 142.11446 * 17 16 15 20 20 H 0.96993 * 119.99903 * 5.04676 * 1 2 3 21 21 H 0.97006 * 120.00177 * 354.44410 * 11 10 9 22 22 H 1.00896 * 111.00098 * 180.02562 * 12 11 10 23 23 H 1.00899 * 110.99701 * 303.95496 * 12 11 10 24 24 H 1.08002 * 119.98882 * 179.97438 * 13 10 9 25 25 H 1.08000 * 119.69058 * 180.02562 * 14 13 10 26 26 H 1.07995 * 119.70295 * 180.02562 * 15 14 13 27 27 H 1.09004 * 109.46829 * 262.12031 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8840 2.3963 -1.2126 6 1 1.8839 2.3965 1.2124 7 6 2.0085 -1.2118 0.0005 8 1 3.0562 -1.2304 -0.2608 9 6 1.3455 -2.4089 0.3423 10 6 0.5177 -2.4646 1.4895 11 7 0.3557 -1.3437 2.2907 12 7 -0.5308 -1.3690 3.3297 13 6 -0.1301 -3.6498 1.8052 14 6 0.0345 -4.7629 1.0026 15 6 0.8461 -4.7098 -0.1229 16 6 1.4954 -3.5568 -0.4572 17 6 2.3726 -3.5133 -1.6820 18 9 1.9939 -4.5318 -2.5631 19 9 2.2303 -2.2732 -2.3136 20 1 -0.4849 0.8367 -0.0739 21 1 0.8720 -0.5419 2.1132 22 1 -0.5398 -0.4867 3.8189 23 1 -1.4558 -1.6142 3.0097 24 1 -0.7634 -3.7029 2.6784 25 1 -0.4727 -5.6829 1.2532 26 1 0.9638 -5.5884 -0.7397 27 1 3.4129 -3.6547 -1.3889 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307268844.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:13 Heat of formation + Delta-G solvation = -68.697764 kcal Electronic energy + Delta-G solvation = -16106.122838 eV Core-core repulsion = 13113.395057 eV Total energy + Delta-G solvation = -2992.727781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.57846 -47.57886 -39.98957 -36.98732 -35.38245 -32.24861 -31.64108 -28.20476 -27.11824 -25.89405 -22.62292 -21.53960 -19.62649 -18.23948 -18.20983 -17.85445 -17.45402 -16.85015 -16.52373 -15.83332 -15.20647 -14.77515 -14.43622 -14.30652 -13.90812 -13.84688 -13.57414 -13.06454 -12.96467 -12.87185 -12.33539 -12.22444 -11.86599 -11.75594 -11.10537 -10.90671 -9.76120 -9.24741 -8.52086 -7.59251 -6.17757 0.86578 1.18442 1.38780 1.44517 1.50968 2.25036 2.65041 2.84201 3.24972 3.54279 3.81584 4.19969 4.42012 4.44265 4.60962 4.90193 4.93516 5.20927 5.44668 5.57154 5.67804 5.98115 6.02720 6.14220 6.34677 6.54154 6.80350 7.01630 7.30421 7.82531 8.48826 Molecular weight = 228.08amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.015445 C = 0.009466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.061487 B = 1812.420781 C = 2957.273748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.039 3.961 3 Si 0.956 3.044 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.073 0.927 9 C 0.062 3.938 10 C 0.175 3.825 11 N -0.580 5.580 12 N -0.597 5.597 13 C -0.184 4.184 14 C -0.165 4.165 15 C -0.138 4.138 16 C -0.239 4.239 17 C 0.328 3.672 18 F -0.219 7.219 19 F -0.208 7.208 20 H 0.277 0.723 21 H 0.397 0.603 22 H 0.354 0.646 23 H 0.322 0.678 24 H 0.117 0.883 25 H 0.126 0.874 26 H 0.115 0.885 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 -1.103 2.621 3.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.172 4.172 3 Si 0.780 3.220 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.526 4.526 8 H 0.091 0.909 9 C 0.056 3.944 10 C 0.071 3.929 11 N -0.304 5.304 12 N -0.221 5.221 13 C -0.209 4.209 14 C -0.185 4.185 15 C -0.159 4.159 16 C -0.242 4.242 17 C 0.274 3.726 18 F -0.200 7.200 19 F -0.189 7.189 20 H 0.087 0.913 21 H 0.236 0.764 22 H 0.167 0.833 23 H 0.136 0.864 24 H 0.135 0.865 25 H 0.144 0.856 26 H 0.133 0.867 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.463 -1.505 3.088 3.734 hybrid contribution -0.362 2.012 -0.884 2.227 sum 1.101 0.507 2.204 2.516 Atomic orbital electron populations 1.69928 1.08124 1.29362 1.39661 1.26233 0.95188 1.02734 0.93000 0.85526 0.79918 0.78153 0.78448 1.18467 1.20609 1.18820 1.19181 0.97426 0.91260 1.44714 0.90879 1.17078 0.94371 0.92948 0.89987 1.17976 0.98703 0.86527 0.89734 1.42914 1.42132 1.14205 1.31114 1.60333 1.08321 1.37224 1.16180 1.20482 1.05511 0.92554 1.02325 1.20644 1.02669 0.98189 0.96951 1.20187 0.99961 0.96876 0.98832 1.20102 1.08367 0.97480 0.98279 1.20162 0.99794 0.70334 0.82278 1.92864 1.93911 1.60977 1.72251 1.92956 1.97438 1.44605 1.83905 0.91252 0.76373 0.83290 0.86407 0.86478 0.85632 0.86700 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.34 11.57 21.83 0.25 -42.09 15 2 C 0.04 1.89 3.51 85.24 0.30 2.19 15 3 Si 0.96 37.61 29.59 68.60 2.03 39.64 15 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 5 H -0.28 -11.19 7.11 99.48 0.71 -10.48 15 6 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 7 C -0.49 -25.00 6.21 23.37 0.15 -24.85 15 8 H 0.07 3.67 7.64 -2.91 -0.02 3.65 15 9 C 0.06 3.15 5.22 -21.17 -0.11 3.03 15 10 C 0.18 8.43 6.19 38.99 0.24 8.67 15 11 N -0.58 -25.19 5.49 -50.39 -0.28 -25.47 15 12 N -0.60 -20.78 9.49 37.02 0.35 -20.43 15 13 C -0.18 -8.11 9.35 22.38 0.21 -7.90 15 14 C -0.17 -6.86 10.04 22.41 0.22 -6.64 15 15 C -0.14 -5.99 9.34 22.01 0.21 -5.78 15 16 C -0.24 -11.28 5.74 -19.67 -0.11 -11.40 15 17 C 0.33 13.88 5.30 71.24 0.38 14.26 15 18 F -0.22 -8.89 16.24 44.97 0.73 -8.16 15 19 F -0.21 -9.96 15.03 44.97 0.68 -9.29 15 20 H 0.28 13.02 8.30 -92.71 -0.77 12.25 15 21 H 0.40 17.80 5.99 -215.49 -1.29 16.51 15 22 H 0.35 10.14 9.21 -210.56 -1.94 8.20 15 23 H 0.32 10.90 8.67 -210.56 -1.83 9.07 15 24 H 0.12 4.68 7.19 -2.91 -0.02 4.66 15 25 H 0.13 4.35 8.06 -2.91 -0.02 4.33 15 26 H 0.12 4.45 7.36 -2.91 -0.02 4.43 15 27 H 0.13 4.46 8.14 -2.38 -0.02 4.44 15 Total: -1.00 -57.02 240.18 1.43 -55.59 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: -3.81 Total: 38.61 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 1.48 Total: -28.42 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: 0.33 Total: -87.99 kcal Atomic # 9 Polarization: -18.85 SS G_CDS: 1.41 Total: -17.44 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -57.02 1.43 -55.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307268844.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.106 kcal (2) G-P(sol) polarization free energy of solvation -57.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds