Wall clock time and date at job start Mon Mar 30 2020 03:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46847 * 179.97438 * 10 9 7 12 12 C 1.47056 * 125.40540 * 90.00807 * 11 10 9 13 13 C 1.54112 * 103.85985 * 179.97438 * 12 11 10 14 14 H 1.08991 * 110.54669 * 241.25878 * 13 12 11 15 15 C 1.50705 * 110.54938 * 118.58959 * 13 12 11 16 16 O 1.20825 * 119.99864 * 260.00207 * 15 13 12 17 17 O 1.34231 * 119.99568 * 79.99878 * 15 13 12 18 18 N 1.47051 * 103.86271 * 359.97438 * 13 12 11 19 19 C 1.33946 * 125.41144 * 269.69289 * 11 10 9 20 20 O 1.21585 * 123.04379 * 0.02562 * 19 11 10 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 25 25 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 26 26 H 1.09001 * 110.54885 * 298.58742 * 12 11 10 27 27 H 1.08992 * 110.55298 * 61.40060 * 12 11 10 28 28 H 0.96697 * 116.99263 * 180.02562 * 17 15 13 29 29 H 0.97001 * 125.41083 * 180.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5128 -4.9307 0.0012 12 6 1.0866 -5.6690 -1.1971 13 6 0.3705 -6.9105 -0.6305 14 1 0.8776 -7.8220 -0.9465 15 6 -1.0728 -6.9324 -1.0637 16 8 -1.9370 -6.5620 -0.3049 17 8 -1.3981 -7.3633 -2.2927 18 7 0.4699 -6.7402 0.8267 19 6 1.1302 -5.6055 1.0931 20 8 1.3587 -5.2213 2.2238 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8906 26 1 0.3985 -5.0683 -1.7920 27 1 1.9506 -5.9644 -1.7921 28 1 -2.3367 -7.3587 -2.5252 29 1 0.1167 -7.3538 1.4897 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397543264.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:40 Heat of formation + Delta-G solvation = -109.410706 kcal Electronic energy + Delta-G solvation = -15862.491537 eV Core-core repulsion = 12979.085826 eV Total energy + Delta-G solvation = -2883.405711 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.39960 -39.80403 -36.45267 -36.02708 -34.83927 -32.92932 -29.93009 -29.15334 -25.11063 -24.11854 -21.99417 -21.62823 -19.82803 -18.45821 -17.68741 -17.18553 -16.74128 -16.24464 -15.44109 -15.02352 -14.33746 -14.06425 -13.69759 -13.51527 -13.00447 -12.88136 -12.65039 -12.15616 -11.76782 -11.71933 -10.96147 -10.81897 -10.36554 -10.16028 -10.05533 -9.89083 -9.33559 -8.69770 -8.32371 -8.16875 -6.36462 -4.06437 1.85596 2.43446 2.83758 3.44696 3.47067 3.48450 3.66402 3.95265 4.09610 4.56413 4.62381 4.82471 5.19072 5.40229 5.42576 5.53028 6.17184 6.21023 6.32624 6.62158 6.90249 7.08325 7.35205 7.48474 7.60364 7.77103 8.15539 8.44373 8.81004 8.86250 9.67029 11.04405 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.036146 B = 0.006468 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.455574 B = 4328.217167 C = 4649.715971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 1.072 2.928 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.603 4.603 8 H 0.052 0.948 9 C -0.005 4.005 10 C 0.158 3.842 11 N -0.625 5.625 12 C 0.107 3.893 13 C 0.137 3.863 14 H 0.128 0.872 15 C 0.465 3.535 16 O -0.493 6.493 17 O -0.513 6.513 18 N -0.725 5.725 19 C 0.700 3.300 20 O -0.572 6.572 21 H 0.269 0.731 22 H 0.014 0.986 23 H 0.007 0.993 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.413 0.587 29 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 -16.635 -6.850 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.899 3.101 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.070 0.930 9 C -0.043 4.043 10 C 0.039 3.961 11 N -0.364 5.364 12 C -0.018 4.018 13 C 0.028 3.972 14 H 0.145 0.855 15 C 0.304 3.696 16 O -0.378 6.378 17 O -0.325 6.325 18 N -0.389 5.389 19 C 0.401 3.599 20 O -0.449 6.449 21 H 0.079 0.921 22 H 0.032 0.968 23 H 0.025 0.975 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.273 0.727 29 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 1.014 -14.490 -5.949 15.696 hybrid contribution -0.863 -2.066 -0.047 2.239 sum 0.151 -16.555 -5.996 17.608 Atomic orbital electron populations 1.70769 1.06949 1.30680 1.46144 1.25877 0.96509 1.02781 0.93607 0.83513 0.74846 0.75166 0.76531 1.20784 1.21331 1.21394 1.21887 0.94299 0.91553 1.56474 0.92985 1.19588 0.95218 0.92906 0.96594 1.21590 0.94082 0.78439 1.02001 1.47645 1.60072 1.24444 1.04231 1.22188 0.99587 0.89889 0.90121 1.21297 0.89475 1.02565 0.83893 0.85466 1.23797 0.92717 0.73604 0.79487 1.90796 1.50824 1.42431 1.53763 1.84495 1.35435 1.78736 1.33858 1.44994 1.62227 1.26463 1.05192 1.15876 0.78792 0.79990 0.85275 1.90974 1.62253 1.70639 1.20994 0.92085 0.96765 0.97498 0.90966 0.90347 0.89574 0.88304 0.72726 0.72756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.72 13.65 55.43 0.76 -27.97 15 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 15 3 Si 1.07 25.58 29.90 -169.99 -5.08 20.49 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.60 -17.38 9.11 -34.44 -0.31 -17.69 15 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 15 9 C -0.01 -0.13 4.61 -27.88 -0.13 -0.26 15 10 C 0.16 3.34 5.94 -4.04 -0.02 3.32 15 11 N -0.63 -11.35 2.96 -178.81 -0.53 -11.88 15 12 C 0.11 1.34 7.32 -3.16 -0.02 1.32 15 13 C 0.14 1.46 4.28 -68.20 -0.29 1.17 15 14 H 0.13 0.81 8.14 -51.93 -0.42 0.39 15 15 C 0.47 5.36 7.45 36.01 0.27 5.63 15 16 O -0.49 -7.86 17.32 -18.75 -0.32 -8.19 15 17 O -0.51 -4.07 13.42 -39.26 -0.53 -4.59 15 18 N -0.72 -10.22 5.60 -59.32 -0.33 -10.55 15 19 C 0.70 13.54 8.60 -88.39 -0.76 12.78 15 20 O -0.57 -13.74 17.53 5.29 0.09 -13.65 15 21 H 0.27 8.58 7.22 -40.82 -0.29 8.29 15 22 H 0.01 0.42 8.01 -51.93 -0.42 0.01 15 23 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 15 24 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 25 H 0.08 1.75 7.91 -51.93 -0.41 1.34 15 26 H 0.09 1.13 7.73 -51.93 -0.40 0.73 15 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 28 H 0.41 1.75 9.10 45.56 0.41 2.16 15 29 H 0.43 5.24 8.96 -40.82 -0.37 4.88 15 LS Contribution 263.58 15.07 3.97 3.97 Total: -1.00 -38.59 263.58 -5.70 -44.30 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -2.36 Total: 1.42 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -1.37 Total: 6.65 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.10 Total: -50.40 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.76 Total: -26.43 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -38.59 -5.70 -44.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397543264.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.114 kcal (2) G-P(sol) polarization free energy of solvation -38.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds