Wall clock time and date at job start Mon Mar 30 2020 03:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46847 * 179.97438 * 10 9 7 12 12 C 1.47056 * 125.40540 * 90.00807 * 11 10 9 13 13 C 1.54112 * 103.85985 * 179.97438 * 12 11 10 14 14 H 1.08991 * 110.54669 * 241.25878 * 13 12 11 15 15 C 1.50705 * 110.54938 * 118.58959 * 13 12 11 16 16 O 1.20825 * 119.99864 * 260.00207 * 15 13 12 17 17 O 1.34231 * 119.99568 * 79.99878 * 15 13 12 18 18 N 1.47051 * 103.86271 * 359.97438 * 13 12 11 19 19 C 1.33946 * 125.41144 * 269.69289 * 11 10 9 20 20 O 1.21585 * 123.04379 * 0.02562 * 19 11 10 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 25 25 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 26 26 H 1.09001 * 110.54885 * 298.58742 * 12 11 10 27 27 H 1.08992 * 110.55298 * 61.40060 * 12 11 10 28 28 H 0.96697 * 116.99263 * 180.02562 * 17 15 13 29 29 H 0.97001 * 125.41083 * 180.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5128 -4.9307 0.0012 12 6 1.0866 -5.6690 -1.1971 13 6 0.3705 -6.9105 -0.6305 14 1 0.8776 -7.8220 -0.9465 15 6 -1.0728 -6.9324 -1.0637 16 8 -1.9370 -6.5620 -0.3049 17 8 -1.3981 -7.3633 -2.2927 18 7 0.4699 -6.7402 0.8267 19 6 1.1302 -5.6055 1.0931 20 8 1.3587 -5.2213 2.2238 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8906 26 1 0.3985 -5.0683 -1.7920 27 1 1.9506 -5.9644 -1.7921 28 1 -2.3367 -7.3587 -2.5252 29 1 0.1167 -7.3538 1.4897 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397543264.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:40 Heat of formation + Delta-G solvation = -141.431241 kcal Electronic energy + Delta-G solvation = -15863.880051 eV Core-core repulsion = 12979.085826 eV Total energy + Delta-G solvation = -2884.794226 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.57948 -40.88603 -37.64290 -37.22033 -36.57043 -34.81697 -31.51144 -30.57509 -26.83681 -25.49229 -23.94649 -22.57087 -21.32850 -19.36185 -19.07931 -18.81229 -18.15987 -17.46679 -16.59953 -16.38863 -15.73296 -15.61560 -15.54559 -14.76144 -14.61025 -14.44633 -14.04778 -13.56798 -13.41899 -12.68257 -12.64052 -12.40601 -12.06132 -11.97869 -11.89384 -11.53590 -10.86743 -10.62267 -10.57774 -9.64606 -8.73602 -6.45038 0.92310 1.37069 1.53762 1.63425 1.70887 1.81892 2.09928 2.57419 2.84839 3.12141 3.13660 3.76096 3.94339 4.14312 4.38875 4.43851 4.59216 4.71657 4.72840 5.10762 5.31600 5.48599 5.53181 5.88887 5.98772 6.12305 6.36529 6.48269 6.84984 7.36254 7.41060 8.66594 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.036146 B = 0.006468 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.455574 B = 4328.217167 C = 4649.715971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.042 4.042 3 Si 1.123 2.877 4 H -0.287 1.287 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.616 4.616 8 H 0.066 0.934 9 C 0.001 3.999 10 C 0.174 3.826 11 N -0.633 5.633 12 C 0.099 3.901 13 C 0.141 3.859 14 H 0.189 0.811 15 C 0.474 3.526 16 O -0.547 6.547 17 O -0.495 6.495 18 N -0.713 5.713 19 C 0.689 3.311 20 O -0.633 6.633 21 H 0.249 0.751 22 H -0.036 1.036 23 H -0.005 1.005 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.149 0.851 28 H 0.432 0.568 29 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 -17.799 -8.936 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.238 4.238 3 Si 0.943 3.057 4 H -0.213 1.213 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.654 4.654 8 H 0.084 0.916 9 C -0.037 4.037 10 C 0.053 3.947 11 N -0.371 5.371 12 C -0.023 4.023 13 C 0.034 3.966 14 H 0.206 0.794 15 C 0.315 3.685 16 O -0.437 6.437 17 O -0.308 6.308 18 N -0.376 5.376 19 C 0.389 3.611 20 O -0.514 6.514 21 H 0.059 0.941 22 H -0.018 1.018 23 H 0.013 0.987 24 H 0.126 0.874 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.167 0.833 28 H 0.294 0.706 29 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 2.584 -15.751 -8.122 17.909 hybrid contribution -1.430 -1.798 0.518 2.355 sum 1.154 -17.549 -7.603 19.160 Atomic orbital electron populations 1.70929 1.08303 1.29500 1.48794 1.27625 0.96461 1.07332 0.92407 0.82883 0.74031 0.70391 0.78381 1.21255 1.19627 1.18161 1.22372 0.95231 0.92533 1.55285 0.91611 1.19478 0.95520 0.95166 0.93525 1.21166 0.92673 0.78017 1.02854 1.47514 1.59678 1.23705 1.06160 1.22646 1.01577 0.89736 0.88354 1.21744 0.89364 1.04227 0.81265 0.79430 1.23920 0.92582 0.72273 0.79754 1.90801 1.52371 1.45010 1.55471 1.84445 1.37221 1.77461 1.31629 1.44836 1.60598 1.24650 1.07472 1.16226 0.79072 0.81134 0.84667 1.90914 1.64602 1.72483 1.23438 0.94139 1.01811 0.98650 0.87367 0.92077 0.90388 0.83292 0.70574 0.71761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.91 13.65 21.45 0.29 -60.61 15 2 C -0.04 -2.47 5.46 84.65 0.46 -2.00 15 3 Si 1.12 50.75 29.90 68.60 2.05 52.80 15 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 15 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 7 C -0.62 -35.71 9.11 25.60 0.23 -35.48 15 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 15 9 C 0.00 0.07 4.61 29.85 0.14 0.21 15 10 C 0.17 7.29 5.94 86.38 0.51 7.80 15 11 N -0.63 -22.45 2.96 -838.36 -2.48 -24.93 15 12 C 0.10 2.17 7.32 86.65 0.63 2.81 15 13 C 0.14 2.54 4.28 44.52 0.19 2.73 15 14 H 0.19 1.24 8.14 -2.39 -0.02 1.22 15 15 C 0.47 9.79 7.45 71.24 0.53 10.33 15 16 O -0.55 -17.20 17.32 21.97 0.38 -16.81 15 17 O -0.49 -6.11 13.42 -51.43 -0.69 -6.81 15 18 N -0.71 -19.18 5.60 -460.33 -2.58 -21.76 15 19 C 0.69 26.79 8.60 179.57 1.54 28.34 15 20 O -0.63 -31.69 17.53 -3.98 -0.07 -31.76 15 21 H 0.25 16.74 7.22 -92.71 -0.67 16.07 15 22 H -0.04 -2.34 8.01 -2.39 -0.02 -2.36 15 23 H 0.00 -0.27 8.01 -2.38 -0.02 -0.29 15 24 H 0.11 3.74 8.14 -2.39 -0.02 3.72 15 25 H 0.06 2.76 7.91 -2.39 -0.02 2.74 15 26 H 0.08 1.87 7.73 -2.39 -0.02 1.85 15 27 H 0.15 1.85 8.14 -2.39 -0.02 1.83 15 28 H 0.43 2.37 9.10 -74.06 -0.67 1.70 15 29 H 0.44 10.29 8.96 -92.71 -0.83 9.46 15 Total: -1.00 -89.39 263.58 0.94 -88.45 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -0.21 Total: 6.70 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 4.25 Total: 14.73 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -4.76 Total: -107.30 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -0.38 Total: -55.38 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.05 Total: 52.80 kcal Total: -89.39 0.94 -88.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397543264.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.981 kcal (2) G-P(sol) polarization free energy of solvation -89.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds