Wall clock time and date at job start Mon Mar 30 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48503 * 109.46845 * 239.99336 * 3 2 1 5 5 H 1.48498 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47035 * 119.99840 * 3 2 1 7 7 C 1.38949 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99737 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00395 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47106 * 179.97438 * 12 10 9 14 14 C 1.46094 * 118.73111 * 269.72860 * 13 12 10 15 15 C 1.53212 * 109.82483 * 161.46875 * 14 13 12 16 16 O 1.43244 * 108.51261 * 49.54342 * 15 14 13 17 17 C 1.42971 * 112.98756 * 291.45691 * 16 15 14 18 18 C 1.33869 * 118.72948 * 89.99873 * 13 12 10 19 19 O 1.21280 * 118.83516 * 1.88443 * 18 13 12 20 20 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 21 21 H 0.96994 * 120.00506 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 23 23 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 24 24 H 1.08994 * 109.39479 * 281.78865 * 14 13 12 25 25 H 1.09004 * 109.39036 * 41.50383 * 14 13 12 26 26 H 1.09003 * 109.82817 * 289.74824 * 15 14 13 27 27 H 1.08992 * 109.66547 * 169.24434 * 15 14 13 28 28 H 1.09009 * 109.41391 * 289.49892 * 17 16 15 29 29 H 1.08998 * 109.36120 * 169.66809 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1959 -5.9764 -0.0005 14 6 2.6477 -6.5135 -1.2818 15 6 3.9377 -7.3159 -1.0831 16 8 3.7414 -8.2314 0.0010 17 6 3.6202 -7.5793 1.2675 18 6 2.6141 -6.4659 1.1731 19 8 2.1652 -5.9951 2.1967 20 1 -0.4850 0.8400 -0.0004 21 1 0.3535 -2.3907 0.0005 22 1 0.6170 -4.9209 0.8897 23 1 0.6175 -4.9205 -0.8902 24 1 1.8747 -7.1609 -1.6957 25 1 2.8373 -5.6915 -1.9722 26 1 4.7604 -6.6408 -0.8473 27 1 4.1687 -7.8702 -1.9927 28 1 4.5877 -7.1696 1.5582 29 1 3.2928 -8.3011 2.0157 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619217167.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:55 Heat of formation + Delta-G solvation = -106.688913 kcal Electronic energy + Delta-G solvation = -16019.035310 eV Core-core repulsion = 13135.747624 eV Total energy + Delta-G solvation = -2883.287685 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47424 -38.10819 -37.40260 -35.06636 -33.85268 -31.30620 -30.20220 -28.85199 -26.17995 -24.36838 -23.65135 -19.77819 -18.77435 -17.95332 -17.54353 -16.63871 -16.41794 -15.56100 -15.25429 -14.71023 -14.33561 -14.03816 -13.76259 -13.56079 -13.27263 -12.89609 -12.38710 -11.68081 -11.57079 -11.54265 -11.21066 -11.00122 -10.46494 -10.46058 -10.25112 -9.53770 -9.30635 -9.00278 -8.10651 -8.00760 -6.44153 -3.85444 2.72570 3.05236 3.18111 3.24348 3.29056 3.71862 3.84359 4.16575 4.45024 4.82453 4.93488 5.07787 5.17103 5.21526 5.31073 5.50600 5.56872 5.65941 5.74893 5.95141 6.16433 6.49193 6.76973 7.52165 7.59177 8.00452 8.30395 8.56965 9.13837 9.49265 9.99736 10.73125 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.052292 B = 0.006211 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.324327 B = 4507.041743 C = 4583.831244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.557 5.557 10 C 0.426 3.574 11 O -0.591 6.591 12 C 0.097 3.903 13 N -0.580 5.580 14 C 0.085 3.915 15 C 0.044 3.956 16 O -0.376 6.376 17 C 0.053 3.947 18 C 0.491 3.509 19 O -0.542 6.542 20 H 0.273 0.727 21 H 0.393 0.607 22 H 0.103 0.897 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 -12.775 -3.528 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.193 5.193 10 C 0.211 3.789 11 O -0.477 6.477 12 C -0.029 4.029 13 N -0.312 5.312 14 C -0.038 4.038 15 C -0.032 4.032 16 O -0.294 6.294 17 C -0.026 4.026 18 C 0.278 3.722 19 O -0.419 6.419 20 H 0.083 0.917 21 H 0.227 0.773 22 H 0.121 0.879 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.131 0.869 28 H 0.108 0.892 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.209 -12.575 -3.023 13.326 hybrid contribution -0.198 1.296 -0.086 1.314 sum 3.011 -11.280 -3.109 12.082 Atomic orbital electron populations 1.69602 1.05944 1.28387 1.50110 1.25275 0.95647 0.99753 0.97118 0.85903 0.78777 0.80373 0.79075 1.19899 1.20889 1.19861 1.19644 0.93315 0.82204 1.47910 0.88044 1.41829 1.09257 1.04544 1.63691 1.20227 0.88655 0.85171 0.84824 1.90494 1.13823 1.87147 1.56205 1.21292 0.91601 0.85767 1.04263 1.46916 1.45317 1.33132 1.05827 1.22137 0.97020 0.98552 0.86117 1.23036 0.96319 0.92760 0.91132 1.88122 1.93526 1.32604 1.15163 1.22802 0.98224 0.94221 0.87365 1.20822 0.83168 0.84705 0.83499 1.90735 1.56505 1.60928 1.33760 0.91713 0.77322 0.87942 0.88896 0.90899 0.89308 0.91319 0.86918 0.89236 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.61 13.05 55.50 0.72 -23.89 15 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 15 3 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 15 7 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 15 8 H 0.10 3.00 7.16 -52.48 -0.38 2.63 15 9 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 15 10 C 0.43 10.33 7.84 -10.98 -0.09 10.24 15 11 O -0.59 -16.26 16.00 5.54 0.09 -16.17 15 12 C 0.10 1.81 5.80 -5.19 -0.03 1.78 15 13 N -0.58 -9.95 2.32 -175.66 -0.41 -10.36 15 14 C 0.09 1.10 6.63 -4.15 -0.03 1.07 15 15 C 0.04 0.50 6.91 37.27 0.26 0.75 15 16 O -0.38 -4.72 10.85 -35.23 -0.38 -5.11 15 17 C 0.05 0.71 6.98 35.84 0.25 0.96 15 18 C 0.49 8.84 7.58 -11.56 -0.09 8.76 15 19 O -0.54 -11.86 16.36 5.56 0.09 -11.77 15 20 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 21 H 0.39 9.66 7.90 -40.82 -0.32 9.34 15 22 H 0.10 1.94 7.24 -51.93 -0.38 1.57 15 23 H 0.09 1.40 8.03 -51.93 -0.42 0.98 15 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.09 1.18 8.13 -51.93 -0.42 0.75 15 26 H 0.07 0.83 8.10 -51.93 -0.42 0.41 15 27 H 0.11 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.09 1.12 8.14 -51.92 -0.42 0.70 15 29 H 0.13 1.41 8.14 -51.93 -0.42 0.99 15 LS Contribution 259.09 15.07 3.90 3.90 Total: -1.00 -34.54 259.09 -4.19 -38.73 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.16 Total: 7.47 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 0.04 Total: 15.47 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.26 Total: -48.69 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.20 Total: -33.05 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -34.54 -4.19 -38.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619217167.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.960 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds