Wall clock time and date at job start Mon Mar 30 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99658 * 2 1 4 4 H 1.48503 * 109.46845 * 239.99336 * 3 2 1 5 5 H 1.48498 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47035 * 119.99840 * 3 2 1 7 7 C 1.38949 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99737 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00395 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47106 * 179.97438 * 12 10 9 14 14 C 1.46094 * 118.73111 * 269.72860 * 13 12 10 15 15 C 1.53212 * 109.82483 * 161.46875 * 14 13 12 16 16 O 1.43244 * 108.51261 * 49.54342 * 15 14 13 17 17 C 1.42971 * 112.98756 * 291.45691 * 16 15 14 18 18 C 1.33869 * 118.72948 * 89.99873 * 13 12 10 19 19 O 1.21280 * 118.83516 * 1.88443 * 18 13 12 20 20 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 21 21 H 0.96994 * 120.00506 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46953 * 299.99667 * 12 10 9 23 23 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 24 24 H 1.08994 * 109.39479 * 281.78865 * 14 13 12 25 25 H 1.09004 * 109.39036 * 41.50383 * 14 13 12 26 26 H 1.09003 * 109.82817 * 289.74824 * 15 14 13 27 27 H 1.08992 * 109.66547 * 169.24434 * 15 14 13 28 28 H 1.09009 * 109.41391 * 289.49892 * 17 16 15 29 29 H 1.08998 * 109.36120 * 169.66809 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1959 -5.9764 -0.0005 14 6 2.6477 -6.5135 -1.2818 15 6 3.9377 -7.3159 -1.0831 16 8 3.7414 -8.2314 0.0010 17 6 3.6202 -7.5793 1.2675 18 6 2.6141 -6.4659 1.1731 19 8 2.1652 -5.9951 2.1967 20 1 -0.4850 0.8400 -0.0004 21 1 0.3535 -2.3907 0.0005 22 1 0.6170 -4.9209 0.8897 23 1 0.6175 -4.9205 -0.8902 24 1 1.8747 -7.1609 -1.6957 25 1 2.8373 -5.6915 -1.9722 26 1 4.7604 -6.6408 -0.8473 27 1 4.1687 -7.8702 -1.9927 28 1 4.5877 -7.1696 1.5582 29 1 3.2928 -8.3011 2.0157 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619217167.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:55 Heat of formation + Delta-G solvation = -134.097682 kcal Electronic energy + Delta-G solvation = -16020.223843 eV Core-core repulsion = 13135.747624 eV Total energy + Delta-G solvation = -2884.476219 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.78753 -39.92072 -38.68266 -36.51865 -35.81845 -33.36497 -31.33101 -30.24700 -27.69174 -26.12220 -24.79488 -21.54261 -20.27399 -19.82101 -18.72432 -18.13171 -17.92481 -16.96400 -16.49912 -16.42133 -15.92198 -15.54913 -15.49228 -15.06728 -14.50381 -14.25808 -13.96832 -13.54607 -13.15278 -12.82124 -12.76102 -12.49335 -12.27067 -12.15253 -11.57666 -11.56186 -10.80707 -10.49485 -10.08470 -9.73022 -8.51009 -6.01140 1.34550 1.36408 1.40314 1.50846 1.79751 1.95117 2.27822 2.75536 3.13493 3.20766 3.33239 3.80328 4.08031 4.17535 4.21397 4.29995 4.40619 4.46005 4.51833 4.72838 4.81292 5.14950 5.35491 5.74357 5.92435 6.31044 6.51225 6.94550 7.05788 7.46772 8.00682 8.65710 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.052292 B = 0.006211 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.324327 B = 4507.041743 C = 4583.831244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.995 3.005 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.275 1.275 7 C -0.338 4.338 8 H 0.078 0.922 9 N -0.566 5.566 10 C 0.423 3.577 11 O -0.629 6.629 12 C 0.106 3.894 13 N -0.584 5.584 14 C 0.076 3.924 15 C 0.045 3.955 16 O -0.372 6.372 17 C 0.062 3.938 18 C 0.476 3.524 19 O -0.592 6.592 20 H 0.280 0.720 21 H 0.398 0.602 22 H 0.098 0.902 23 H 0.134 0.866 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.155 0.845 28 H 0.098 0.902 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 -13.571 -4.540 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.818 3.182 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.203 5.203 10 C 0.210 3.790 11 O -0.516 6.516 12 C -0.021 4.021 13 N -0.315 5.315 14 C -0.045 4.045 15 C -0.031 4.031 16 O -0.290 6.290 17 C -0.017 4.017 18 C 0.266 3.734 19 O -0.474 6.474 20 H 0.089 0.911 21 H 0.232 0.768 22 H 0.116 0.884 23 H 0.152 0.848 24 H 0.124 0.876 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.172 0.828 28 H 0.116 0.884 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.282 -13.403 -4.076 14.388 hybrid contribution -0.225 1.508 0.192 1.537 sum 3.057 -11.895 -3.884 12.881 Atomic orbital electron populations 1.69663 1.06871 1.29589 1.49647 1.26080 0.96575 1.02489 0.95923 0.84967 0.77794 0.76461 0.78971 1.19285 1.19238 1.20035 1.19621 0.92664 0.83962 1.50488 0.90414 1.41898 1.09409 1.04679 1.64293 1.21240 0.88549 0.86527 0.82699 1.90458 1.15743 1.88014 1.57400 1.21201 0.91560 0.83358 1.05982 1.47208 1.44786 1.32175 1.07371 1.22496 0.98949 0.99019 0.84077 1.23227 0.94852 0.92810 0.92260 1.88141 1.93308 1.32544 1.14996 1.22814 0.97039 0.93291 0.88531 1.21792 0.83260 0.85395 0.82980 1.90701 1.58372 1.62837 1.35454 0.91088 0.76838 0.88364 0.84791 0.87619 0.89849 0.92666 0.82793 0.88380 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.90 13.05 21.66 0.28 -49.62 15 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 15 3 Si 0.99 43.19 29.55 68.60 2.03 45.22 15 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 7 C -0.34 -19.52 9.68 84.04 0.81 -18.70 15 8 H 0.08 4.78 7.16 -2.91 -0.02 4.75 15 9 N -0.57 -29.82 5.29 -306.98 -1.62 -31.44 15 10 C 0.42 20.80 7.84 87.66 0.69 21.49 15 11 O -0.63 -35.38 16.00 -3.08 -0.05 -35.43 15 12 C 0.11 3.88 5.80 85.64 0.50 4.37 15 13 N -0.58 -19.38 2.32 -828.58 -1.92 -21.31 15 14 C 0.08 1.78 6.63 86.53 0.57 2.35 15 15 C 0.04 0.88 6.91 72.05 0.50 1.38 15 16 O -0.37 -8.26 10.85 -148.98 -1.62 -9.87 15 17 C 0.06 1.56 6.98 71.13 0.50 2.06 15 18 C 0.48 16.90 7.58 87.69 0.66 17.57 15 19 O -0.59 -26.30 16.36 -3.03 -0.05 -26.35 15 20 H 0.28 14.21 8.31 -92.71 -0.77 13.44 15 21 H 0.40 19.82 7.90 -92.71 -0.73 19.09 15 22 H 0.10 3.73 7.24 -2.39 -0.02 3.71 15 23 H 0.13 3.76 8.03 -2.39 -0.02 3.74 15 24 H 0.11 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.08 2.06 8.13 -2.39 -0.02 2.04 15 26 H 0.05 1.25 8.10 -2.39 -0.02 1.23 15 27 H 0.15 1.75 8.14 -2.39 -0.02 1.73 15 28 H 0.10 2.31 8.14 -2.38 -0.02 2.29 15 29 H 0.15 3.02 8.14 -2.39 -0.02 3.00 15 Total: -1.00 -75.82 259.09 2.19 -73.62 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.44 Total: 24.75 kcal Atomic # 6 Polarization: 25.72 SS G_CDS: 4.70 Total: 30.42 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -3.26 Total: -102.36 kcal Atomic # 8 Polarization: -69.94 SS G_CDS: -1.72 Total: -71.65 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -75.82 2.19 -73.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619217167.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.474 kcal (2) G-P(sol) polarization free energy of solvation -75.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds