Wall clock time and date at job start Mon Mar 30 2020 03:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99640 * 2 1 4 4 H 1.48506 * 109.46905 * 269.99827 * 3 2 1 5 5 H 1.48505 * 109.47292 * 29.99535 * 3 2 1 6 6 H 1.48499 * 109.47498 * 149.99762 * 3 2 1 7 7 C 1.37872 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99787 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00447 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47519 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47508 * 180.02562 * 10 9 7 12 12 C 1.34223 * 117.00043 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00449 * 359.97438 * 12 11 10 14 14 C 1.50709 * 119.99822 * 179.97438 * 12 11 10 15 15 H 1.09001 * 110.59860 * 42.77822 * 14 12 11 16 16 C 1.54102 * 110.54786 * 280.00005 * 14 12 11 17 17 N 1.47062 * 103.98842 * 241.33218 * 16 14 12 18 18 C 1.34257 * 109.00559 * 0.12255 * 17 16 14 19 19 O 1.21585 * 122.99858 * 179.97438 * 18 17 16 20 20 N 1.33956 * 113.95949 * 359.86924 * 18 17 16 21 21 H 0.97001 * 120.00352 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46848 * 59.99682 * 9 7 2 23 23 H 1.09000 * 109.47327 * 300.00332 * 9 7 2 24 24 H 1.08993 * 109.47153 * 59.99919 * 10 9 7 25 25 H 1.09004 * 109.47528 * 300.00153 * 10 9 7 26 26 H 1.09002 * 110.55087 * 359.97438 * 16 14 12 27 27 H 1.08997 * 110.54745 * 122.66589 * 16 14 12 28 28 H 0.96995 * 125.40605 * 180.02562 * 17 16 14 29 29 H 0.97000 * 125.40159 * 180.08326 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5195 -4.9195 -0.0001 12 6 2.2506 -6.0452 0.0004 13 8 3.4572 -5.9819 0.0008 14 6 1.5665 -7.3880 0.0004 15 1 0.7254 -7.3899 -0.6929 16 6 1.0972 -7.7560 1.4213 17 7 1.8338 -8.9907 1.7304 18 6 2.6116 -9.3095 0.6836 19 8 3.3323 -10.2886 0.6680 20 7 2.5205 -8.4532 -0.3426 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8902 24 1 2.8720 -3.6042 0.8904 25 1 2.8721 -3.6043 -0.8894 26 1 1.3594 -6.9676 2.1270 27 1 0.0226 -7.9381 1.4341 28 1 1.7683 -9.4919 2.5582 29 1 3.0065 -8.5247 -1.1789 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732361550.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:47 Heat of formation + Delta-G solvation = -109.589818 kcal Electronic energy + Delta-G solvation = -15356.275002 eV Core-core repulsion = 12472.861524 eV Total energy + Delta-G solvation = -2883.413478 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.48902 -39.73647 -36.71249 -36.07409 -33.44245 -33.24785 -30.65075 -29.42404 -25.42397 -24.10607 -22.01330 -21.36196 -20.70463 -18.10908 -17.95791 -16.66351 -16.54505 -16.13487 -16.00175 -15.35384 -14.62651 -14.43825 -14.21091 -13.74494 -13.35421 -12.77504 -12.52053 -12.41960 -11.34779 -11.15965 -10.85155 -10.82772 -10.60711 -10.46575 -9.84218 -9.78956 -9.62868 -9.40099 -9.14048 -8.51478 -6.17639 -4.22378 2.15385 2.45203 2.73887 3.10233 3.24016 3.30579 3.34447 3.76319 3.98058 4.32210 4.63386 4.74856 5.05378 5.19291 5.25642 5.36275 5.93730 5.95896 6.51217 6.73590 6.76413 6.90967 7.09892 7.45171 7.51905 7.76765 7.96526 8.15169 8.39181 8.83050 9.42676 10.93703 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.075386 B = 0.004533 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.334111 B = 6175.860945 C = 6351.331192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.352 6.352 12 C 0.442 3.558 13 O -0.499 6.499 14 C 0.130 3.870 15 H 0.132 0.868 16 C 0.106 3.894 17 N -0.740 5.740 18 C 0.707 3.293 19 O -0.584 6.584 20 N -0.715 5.715 21 H 0.264 0.736 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.433 0.567 29 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 -13.560 1.521 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.267 6.267 12 C 0.281 3.719 13 O -0.386 6.386 14 C 0.021 3.979 15 H 0.149 0.851 16 C -0.020 4.020 17 N -0.404 5.404 18 C 0.406 3.594 19 O -0.461 6.461 20 N -0.378 5.378 21 H 0.074 0.926 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.122 0.878 28 H 0.276 0.724 29 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -0.931 -13.850 1.519 13.964 hybrid contribution 0.692 1.035 -0.052 1.246 sum -0.239 -12.815 1.466 12.901 Atomic orbital electron populations 1.69964 1.06086 1.27097 1.49622 1.24974 0.94927 0.99413 0.94763 0.86468 0.79773 0.82762 0.78294 1.20448 1.21001 1.19716 1.20964 0.93195 0.90077 1.52435 0.92258 1.19177 0.94139 0.88897 0.98978 1.23735 0.96488 0.78368 1.01158 1.86521 1.42298 1.15655 1.82232 1.23639 0.86888 0.87406 0.73923 1.90688 1.15528 1.87995 1.44439 1.21426 0.92784 0.84259 0.99405 0.85081 1.22245 0.98404 0.88026 0.93297 1.45151 1.47370 1.28829 1.19031 1.15910 0.80225 0.82637 0.80676 1.90999 1.43988 1.29336 1.81814 1.44900 1.48383 1.25291 1.19266 0.92637 0.95259 0.95233 0.92138 0.92129 0.89050 0.87820 0.72432 0.72179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.29 55.43 0.74 -24.75 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.53 -14.32 9.11 -34.44 -0.31 -14.63 15 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 15 9 C 0.03 0.62 5.35 -27.89 -0.15 0.47 15 10 C 0.07 1.54 5.40 37.15 0.20 1.74 15 11 O -0.35 -6.07 10.22 -39.24 -0.40 -6.47 15 12 C 0.44 6.63 7.08 36.01 0.26 6.89 15 13 O -0.50 -9.18 16.31 -18.75 -0.31 -9.49 15 14 C 0.13 1.32 4.28 -68.20 -0.29 1.03 15 15 H 0.13 0.94 8.14 -51.93 -0.42 0.51 15 16 C 0.11 0.86 7.69 -3.16 -0.02 0.83 15 17 N -0.74 -7.07 6.40 -64.61 -0.41 -7.48 15 18 C 0.71 9.35 8.92 -88.12 -0.79 8.57 15 19 O -0.58 -10.04 18.05 5.29 0.10 -9.94 15 20 N -0.72 -8.18 5.60 -59.25 -0.33 -8.51 15 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 15 24 H 0.06 1.24 8.13 -51.93 -0.42 0.82 15 25 H 0.06 1.25 8.13 -51.93 -0.42 0.82 15 26 H 0.09 0.78 7.72 -51.93 -0.40 0.38 15 27 H 0.10 0.52 8.14 -51.93 -0.42 0.09 15 28 H 0.43 3.19 8.96 -40.82 -0.37 2.83 15 29 H 0.44 4.57 8.96 -40.82 -0.37 4.20 15 LS Contribution 264.56 15.07 3.99 3.99 Total: -1.00 -33.91 264.56 -6.07 -39.98 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.21 Total: 0.37 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.21 Total: 6.49 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.01 Total: -40.74 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.61 Total: -25.91 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.91 -6.07 -39.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732361550.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.607 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds