Wall clock time and date at job start Mon Mar 30 2020 03:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99640 * 2 1 4 4 H 1.48506 * 109.46905 * 269.99827 * 3 2 1 5 5 H 1.48505 * 109.47292 * 29.99535 * 3 2 1 6 6 H 1.48499 * 109.47498 * 149.99762 * 3 2 1 7 7 C 1.37872 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99787 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00447 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47519 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47508 * 180.02562 * 10 9 7 12 12 C 1.34223 * 117.00043 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00449 * 359.97438 * 12 11 10 14 14 C 1.50709 * 119.99822 * 179.97438 * 12 11 10 15 15 H 1.09001 * 110.59860 * 42.77822 * 14 12 11 16 16 C 1.54102 * 110.54786 * 280.00005 * 14 12 11 17 17 N 1.47062 * 103.98842 * 241.33218 * 16 14 12 18 18 C 1.34257 * 109.00559 * 0.12255 * 17 16 14 19 19 O 1.21585 * 122.99858 * 179.97438 * 18 17 16 20 20 N 1.33956 * 113.95949 * 359.86924 * 18 17 16 21 21 H 0.97001 * 120.00352 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46848 * 59.99682 * 9 7 2 23 23 H 1.09000 * 109.47327 * 300.00332 * 9 7 2 24 24 H 1.08993 * 109.47153 * 59.99919 * 10 9 7 25 25 H 1.09004 * 109.47528 * 300.00153 * 10 9 7 26 26 H 1.09002 * 110.55087 * 359.97438 * 16 14 12 27 27 H 1.08997 * 110.54745 * 122.66589 * 16 14 12 28 28 H 0.96995 * 125.40605 * 180.02562 * 17 16 14 29 29 H 0.97000 * 125.40159 * 180.08326 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5195 -4.9195 -0.0001 12 6 2.2506 -6.0452 0.0004 13 8 3.4572 -5.9819 0.0008 14 6 1.5665 -7.3880 0.0004 15 1 0.7254 -7.3899 -0.6929 16 6 1.0972 -7.7560 1.4213 17 7 1.8338 -8.9907 1.7304 18 6 2.6116 -9.3095 0.6836 19 8 3.3323 -10.2886 0.6680 20 7 2.5205 -8.4532 -0.3426 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8902 24 1 2.8720 -3.6042 0.8904 25 1 2.8721 -3.6043 -0.8894 26 1 1.3594 -6.9676 2.1270 27 1 0.0226 -7.9381 1.4341 28 1 1.7683 -9.4919 2.5582 29 1 3.0065 -8.5247 -1.1789 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732361550.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:47 Heat of formation + Delta-G solvation = -136.402060 kcal Electronic energy + Delta-G solvation = -15357.437668 eV Core-core repulsion = 12472.861524 eV Total energy + Delta-G solvation = -2884.576144 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.49294 -41.00710 -37.97325 -37.31747 -35.44032 -34.11143 -32.43705 -30.51551 -27.15572 -25.23792 -23.07307 -22.89351 -22.04271 -19.25112 -19.08146 -18.33707 -17.67892 -17.56853 -17.27293 -16.60462 -16.28273 -15.50385 -15.28646 -15.01363 -14.56339 -14.36672 -13.94183 -13.48890 -13.08568 -13.01768 -12.60489 -12.58071 -12.00174 -11.68120 -11.55307 -11.48305 -11.41171 -10.68942 -10.59527 -9.98227 -8.26271 -6.38493 0.97648 1.32821 1.43013 1.43912 1.54831 1.80876 2.05648 2.40334 2.94521 3.08684 3.18442 3.51378 3.97077 4.23453 4.24192 4.31431 4.61184 4.65083 4.72494 5.25630 5.50845 5.51367 5.75578 5.83824 6.08369 6.16620 6.19135 6.62776 6.75485 7.31240 7.44905 8.85834 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.075386 B = 0.004533 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.334111 B = 6175.860945 C = 6351.331192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.551 4.551 8 H 0.062 0.938 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.351 6.351 12 C 0.444 3.556 13 O -0.535 6.535 14 C 0.138 3.862 15 H 0.174 0.826 16 C 0.106 3.894 17 N -0.727 5.727 18 C 0.698 3.302 19 O -0.631 6.631 20 N -0.713 5.713 21 H 0.268 0.732 22 H 0.010 0.990 23 H 0.012 0.988 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.150 0.850 28 H 0.444 0.556 29 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 -13.578 1.728 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.017 3.983 11 O -0.266 6.266 12 C 0.285 3.715 13 O -0.425 6.425 14 C 0.030 3.970 15 H 0.191 0.809 16 C -0.018 4.018 17 N -0.391 5.391 18 C 0.396 3.604 19 O -0.512 6.512 20 N -0.375 5.375 21 H 0.077 0.923 22 H 0.029 0.971 23 H 0.031 0.969 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.167 0.833 28 H 0.288 0.712 29 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -1.436 -13.868 1.741 14.050 hybrid contribution 0.819 0.996 -0.109 1.295 sum -0.616 -12.871 1.632 12.989 Atomic orbital electron populations 1.70069 1.07605 1.28226 1.50395 1.25874 0.95804 1.03127 0.94200 0.85403 0.78574 0.78225 0.78589 1.19704 1.20412 1.18986 1.21380 0.93629 0.91473 1.52412 0.92007 1.18973 0.94297 0.90187 0.97130 1.23183 0.95102 0.79044 1.00956 1.86504 1.42059 1.15355 1.82662 1.24689 0.86624 0.88056 0.72086 1.90683 1.17317 1.88367 1.46085 1.21780 0.92657 0.80560 1.02022 0.80879 1.22535 1.00580 0.87118 0.91592 1.45131 1.46413 1.29015 1.18507 1.16179 0.80254 0.82372 0.81573 1.90962 1.46047 1.31419 1.82774 1.44951 1.48571 1.24991 1.19021 0.92336 0.97127 0.96923 0.92299 0.92347 0.89186 0.83261 0.71213 0.71947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.15 13.29 21.45 0.28 -52.86 15 2 C 0.01 0.51 5.46 84.65 0.46 0.97 15 3 Si 0.97 42.33 29.54 68.60 2.03 44.35 15 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 15 7 C -0.55 -29.94 9.11 25.60 0.23 -29.71 15 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 15 9 C 0.03 1.56 5.35 29.84 0.16 1.72 15 10 C 0.09 3.70 5.40 71.98 0.39 4.09 15 11 O -0.35 -11.66 10.22 -51.35 -0.52 -12.18 15 12 C 0.44 12.58 7.08 71.24 0.50 13.09 15 13 O -0.54 -19.31 16.31 21.97 0.36 -18.96 15 14 C 0.14 2.39 4.28 44.52 0.19 2.58 15 15 H 0.17 1.68 8.14 -2.39 -0.02 1.66 15 16 C 0.11 1.34 7.69 86.64 0.67 2.01 15 17 N -0.73 -12.12 6.40 -476.88 -3.05 -15.18 15 18 C 0.70 17.52 8.92 179.47 1.60 19.12 15 19 O -0.63 -21.57 18.05 -3.98 -0.07 -21.65 15 20 N -0.71 -15.06 5.60 -460.08 -2.58 -17.64 15 21 H 0.27 14.40 8.31 -92.71 -0.77 13.63 15 22 H 0.01 0.55 8.14 -2.38 -0.02 0.53 15 23 H 0.01 0.65 8.14 -2.39 -0.02 0.63 15 24 H 0.06 2.41 8.13 -2.39 -0.02 2.39 15 25 H 0.06 2.40 8.13 -2.38 -0.02 2.38 15 26 H 0.09 1.25 7.72 -2.39 -0.02 1.24 15 27 H 0.15 0.69 8.14 -2.39 -0.02 0.67 15 28 H 0.44 5.54 8.96 -92.71 -0.83 4.71 15 29 H 0.44 8.70 8.96 -92.71 -0.83 7.87 15 Total: -1.00 -73.96 264.56 0.18 -73.78 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -0.47 Total: 6.46 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 4.21 Total: 13.87 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -5.34 Total: -85.68 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -0.24 Total: -52.78 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -73.96 0.18 -73.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732361550.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.625 kcal (2) G-P(sol) polarization free energy of solvation -73.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds