Wall clock time and date at job start Mon Mar 30 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46805 * 2 1 4 4 C 1.50697 * 109.47457 * 239.99649 * 2 1 3 5 5 H 1.07999 * 120.00255 * 240.00526 * 4 2 1 6 6 C 1.37876 * 120.00067 * 59.99873 * 4 2 1 7 7 N 1.31516 * 120.00012 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00312 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46814 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47217 * 120.00310 * 8 6 4 11 11 H 1.48504 * 109.47184 * 240.00336 * 8 6 4 12 12 C 1.50704 * 109.46733 * 119.99811 * 2 1 3 13 13 O 1.20819 * 120.00061 * 120.00388 * 12 2 1 14 14 O 1.34226 * 119.99879 * 299.99658 * 12 2 1 15 15 C 1.45197 * 117.00076 * 180.02562 * 14 12 2 16 16 H 1.09005 * 110.41530 * 27.70612 * 15 14 12 17 17 C 1.54497 * 110.37008 * 150.00465 * 15 14 12 18 18 C 1.54566 * 102.14816 * 134.18474 * 17 15 14 19 19 O 1.45833 * 104.44281 * 333.15015 * 18 17 15 20 20 C 1.34061 * 109.90864 * 30.60531 * 19 18 17 21 21 O 1.20830 * 125.09969 * 159.19094 * 20 19 18 22 22 H 1.09003 * 109.47056 * 60.00577 * 1 2 3 23 23 H 1.09000 * 109.47277 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47737 * 300.00489 * 1 2 3 25 25 H 0.96996 * 120.00290 * 179.97438 * 7 6 4 26 26 H 1.09003 * 110.86355 * 252.34560 * 17 15 14 27 27 H 1.08999 * 110.86629 * 15.81341 * 17 15 14 28 28 H 1.08994 * 110.44536 * 91.88848 * 18 17 15 29 29 H 1.08999 * 110.44351 * 214.41114 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3215 -1.1205 -4.0078 9 1 3.1456 -2.2879 -3.6035 10 1 1.1663 -1.5869 -4.8160 11 1 3.1468 -0.1876 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6927 1.1198 14 8 1.7080 -0.2517 2.4496 15 6 2.2275 -0.9855 3.5897 16 1 3.1614 -1.4831 3.3281 17 6 2.4422 -0.0350 4.7886 18 6 1.8233 -0.8380 5.9553 19 8 0.8239 -1.6897 5.3208 20 6 1.2101 -1.9957 4.0740 21 8 0.8061 -2.9367 3.4328 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7096 1.1616 -3.4844 26 1 3.5043 0.1413 4.9589 27 1 1.9135 0.9062 4.6373 28 1 2.5843 -1.4447 6.4458 29 1 1.3510 -0.1659 6.6717 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849848448.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:42 Heat of formation + Delta-G solvation = -168.458407 kcal Electronic energy + Delta-G solvation = -16049.015982 eV Core-core repulsion = 13130.757019 eV Total energy + Delta-G solvation = -2918.258963 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.15626 -39.39351 -37.45273 -35.91487 -33.93769 -32.36036 -30.58114 -27.71424 -25.22956 -23.47475 -22.67738 -21.24143 -19.92933 -17.55316 -17.34419 -16.82866 -16.21202 -16.03412 -15.16255 -15.08337 -14.22846 -13.96737 -13.68088 -13.05154 -12.74873 -12.62891 -12.29046 -11.79211 -11.33973 -11.21841 -11.08199 -10.78633 -10.74737 -10.72032 -10.35338 -10.07768 -9.72813 -9.23675 -9.06701 -8.47644 -6.12833 -4.18345 1.92578 2.89876 3.14750 3.28770 3.36090 3.42184 3.52562 3.89115 4.06835 4.39275 4.56808 4.63099 5.04594 5.13733 5.20805 5.42006 5.55820 5.99939 6.58620 6.63833 6.81903 6.83693 7.02650 7.39565 7.44406 7.71708 7.91285 8.09881 8.70283 8.90418 9.47436 10.94671 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.053099 B = 0.006554 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.190123 B = 4271.053767 C = 4366.433511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 H 0.067 0.933 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.462 3.538 13 O -0.502 6.502 14 O -0.339 6.339 15 C 0.021 3.979 16 H 0.124 0.876 17 C -0.153 4.153 18 C 0.056 3.944 19 O -0.344 6.344 20 C 0.470 3.530 21 O -0.428 6.428 22 H 0.098 0.902 23 H 0.033 0.967 24 H 0.023 0.977 25 H 0.263 0.737 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 1.718 15.040 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.043 3.957 3 H 0.084 0.916 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.306 3.694 13 O -0.386 6.386 14 O -0.257 6.257 15 C -0.037 4.037 16 H 0.141 0.859 17 C -0.190 4.190 18 C -0.018 4.018 19 O -0.261 6.261 20 C 0.308 3.692 21 O -0.309 6.309 22 H 0.116 0.884 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.329 0.977 14.675 14.891 hybrid contribution 0.480 -0.429 -0.769 1.003 sum 2.809 0.548 13.906 14.197 Atomic orbital electron populations 1.21757 0.95415 1.00355 1.01769 1.18817 0.94978 0.96929 0.85012 0.91579 1.21172 1.31989 1.13275 0.88650 0.90496 1.24935 0.94850 0.95011 0.99160 1.69884 1.36503 1.22810 1.23842 0.86303 0.78685 0.79707 0.82032 1.19462 1.20830 1.20869 1.25661 0.76566 0.83489 0.83667 1.90518 1.36028 1.26140 1.85951 1.86861 1.70412 1.53794 1.14680 1.23730 0.98766 0.93426 0.87782 0.85894 1.23094 1.04105 1.00138 0.91686 1.24114 0.90161 0.92309 0.95253 1.87056 1.45222 1.64981 1.28820 1.23362 0.80626 0.84353 0.80883 1.90769 1.54725 1.27911 1.57462 0.88363 0.94758 0.95827 0.92687 0.87555 0.87394 0.89326 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.90 37.16 0.33 -2.96 15 2 C 0.06 1.58 2.74 -92.92 -0.25 1.32 15 3 H 0.07 1.70 8.14 -51.93 -0.42 1.28 15 4 C -0.51 -14.53 8.37 -34.44 -0.29 -14.82 15 5 H 0.08 2.28 6.76 -52.49 -0.35 1.93 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 15 7 N -0.89 -24.83 11.32 55.43 0.63 -24.21 15 8 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 15 9 H -0.27 -6.52 7.11 56.52 0.40 -6.11 15 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 12 C 0.46 11.00 7.25 36.01 0.26 11.27 15 13 O -0.50 -12.99 14.67 -18.74 -0.28 -13.27 15 14 O -0.34 -6.68 9.81 -39.31 -0.39 -7.06 15 15 C 0.02 0.32 3.33 -26.79 -0.09 0.24 15 16 H 0.12 1.93 7.15 -51.93 -0.37 1.56 15 17 C -0.15 -1.41 6.98 -25.12 -0.18 -1.59 15 18 C 0.06 0.44 7.90 37.98 0.30 0.74 15 19 O -0.34 -4.76 11.05 -38.47 -0.43 -5.19 15 20 C 0.47 8.18 8.26 36.32 0.30 8.48 15 21 O -0.43 -9.37 18.00 -18.48 -0.33 -9.71 15 22 H 0.10 2.54 6.07 -51.93 -0.32 2.23 15 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.02 0.50 8.11 -51.93 -0.42 0.08 15 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 26 H 0.11 0.68 8.14 -51.93 -0.42 0.26 15 27 H 0.11 0.97 8.06 -51.93 -0.42 0.55 15 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 15 29 H 0.12 0.58 8.14 -51.93 -0.42 0.15 15 LS Contribution 259.91 15.07 3.92 3.92 Total: -1.00 -33.34 259.91 -4.73 -38.08 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -3.13 Total: -3.47 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 0.29 Total: 4.30 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.63 Total: -24.21 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.42 Total: -35.22 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.34 -4.73 -38.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849848448.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.380 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds