Wall clock time and date at job start Mon Mar 30 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46805 * 2 1 4 4 C 1.50697 * 109.47457 * 239.99649 * 2 1 3 5 5 H 1.07999 * 120.00255 * 240.00526 * 4 2 1 6 6 C 1.37876 * 120.00067 * 59.99873 * 4 2 1 7 7 N 1.31516 * 120.00012 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00312 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46814 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47217 * 120.00310 * 8 6 4 11 11 H 1.48504 * 109.47184 * 240.00336 * 8 6 4 12 12 C 1.50704 * 109.46733 * 119.99811 * 2 1 3 13 13 O 1.20819 * 120.00061 * 120.00388 * 12 2 1 14 14 O 1.34226 * 119.99879 * 299.99658 * 12 2 1 15 15 C 1.45197 * 117.00076 * 180.02562 * 14 12 2 16 16 H 1.09005 * 110.41530 * 27.70612 * 15 14 12 17 17 C 1.54497 * 110.37008 * 150.00465 * 15 14 12 18 18 C 1.54566 * 102.14816 * 134.18474 * 17 15 14 19 19 O 1.45833 * 104.44281 * 333.15015 * 18 17 15 20 20 C 1.34061 * 109.90864 * 30.60531 * 19 18 17 21 21 O 1.20830 * 125.09969 * 159.19094 * 20 19 18 22 22 H 1.09003 * 109.47056 * 60.00577 * 1 2 3 23 23 H 1.09000 * 109.47277 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47737 * 300.00489 * 1 2 3 25 25 H 0.96996 * 120.00290 * 179.97438 * 7 6 4 26 26 H 1.09003 * 110.86355 * 252.34560 * 17 15 14 27 27 H 1.08999 * 110.86629 * 15.81341 * 17 15 14 28 28 H 1.08994 * 110.44536 * 91.88848 * 18 17 15 29 29 H 1.08999 * 110.44351 * 214.41114 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3215 -1.1205 -4.0078 9 1 3.1456 -2.2879 -3.6035 10 1 1.1663 -1.5869 -4.8160 11 1 3.1468 -0.1876 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6927 1.1198 14 8 1.7080 -0.2517 2.4496 15 6 2.2275 -0.9855 3.5897 16 1 3.1614 -1.4831 3.3281 17 6 2.4422 -0.0350 4.7886 18 6 1.8233 -0.8380 5.9553 19 8 0.8239 -1.6897 5.3208 20 6 1.2101 -1.9957 4.0740 21 8 0.8061 -2.9367 3.4328 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7096 1.1616 -3.4844 26 1 3.5043 0.1413 4.9589 27 1 1.9135 0.9062 4.6373 28 1 2.5843 -1.4447 6.4458 29 1 1.3510 -0.1659 6.6717 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849848448.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:42 Heat of formation + Delta-G solvation = -190.379056 kcal Electronic energy + Delta-G solvation = -16049.966532 eV Core-core repulsion = 13130.757019 eV Total energy + Delta-G solvation = -2919.209513 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.43938 -41.05340 -38.80582 -37.61359 -35.99220 -33.49372 -32.53658 -28.80388 -27.33290 -25.29758 -23.59385 -22.70809 -21.59160 -18.97826 -18.72804 -18.28153 -18.10031 -17.63501 -16.80301 -16.68373 -15.94422 -15.12628 -15.00811 -14.79317 -14.31055 -13.79408 -13.72760 -13.22897 -13.03987 -12.99294 -12.77000 -12.66823 -12.43329 -12.34282 -12.10059 -11.58075 -11.18900 -11.15981 -11.08120 -10.56741 -8.23465 -6.36645 0.55867 1.28487 1.39818 1.41562 1.53627 1.68213 2.16929 2.42431 2.73512 3.06799 3.16730 3.63622 3.85197 4.03956 4.29241 4.61749 4.62882 4.77719 4.82436 4.84719 4.94730 5.24382 5.36874 5.53606 5.64170 5.81612 6.04506 6.12835 6.69107 6.88015 7.32237 8.83388 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.053099 B = 0.006554 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.190123 B = 4271.053767 C = 4366.433511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.053 3.947 3 H 0.063 0.937 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.964 3.036 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.269 1.269 12 C 0.469 3.531 13 O -0.531 6.531 14 O -0.335 6.335 15 C 0.008 3.992 16 H 0.120 0.880 17 C -0.137 4.137 18 C 0.051 3.949 19 O -0.350 6.350 20 C 0.470 3.530 21 O -0.489 6.489 22 H 0.083 0.917 23 H 0.020 0.980 24 H 0.049 0.951 25 H 0.270 0.730 26 H 0.144 0.856 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 2.813 16.578 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.034 3.966 3 H 0.080 0.920 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.176 4.176 7 N -0.545 5.545 8 Si 0.789 3.211 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.194 1.194 12 C 0.314 3.686 13 O -0.418 6.418 14 O -0.252 6.252 15 C -0.049 4.049 16 H 0.138 0.862 17 C -0.174 4.174 18 C -0.021 4.021 19 O -0.267 6.267 20 C 0.311 3.689 21 O -0.375 6.375 22 H 0.101 0.899 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.162 0.838 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.879 2.126 16.267 16.656 hybrid contribution 0.314 -0.706 -1.068 1.318 sum 3.193 1.420 15.200 15.596 Atomic orbital electron populations 1.21591 0.94661 0.99538 1.02240 1.18728 0.95603 0.96583 0.85638 0.91966 1.21267 1.32813 1.13306 0.90511 0.92736 1.25622 0.94816 0.95644 1.01503 1.69945 1.36488 1.23275 1.24829 0.85412 0.78376 0.78540 0.78780 1.20312 1.19936 1.19391 1.25133 0.75973 0.82727 0.84779 1.90497 1.37313 1.27243 1.86785 1.86767 1.70212 1.53753 1.14496 1.24291 0.97695 0.94884 0.88032 0.86240 1.23275 1.06873 0.98886 0.88341 1.24735 0.90090 0.92484 0.94769 1.87039 1.46733 1.65732 1.27187 1.23685 0.79908 0.83650 0.81704 1.90729 1.56984 1.30398 1.59349 0.89867 0.96098 0.93218 0.92113 0.83824 0.86546 0.86212 0.82705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.90 71.98 0.64 -5.38 15 2 C 0.05 2.79 2.74 -12.29 -0.03 2.75 15 3 H 0.06 3.25 8.14 -2.39 -0.02 3.24 15 4 C -0.54 -31.37 8.37 25.60 0.21 -31.16 15 5 H 0.05 3.35 6.76 -2.91 -0.02 3.33 15 6 C 0.02 1.35 5.30 84.65 0.45 1.80 15 7 N -0.91 -50.44 11.32 21.45 0.24 -50.20 15 8 Si 0.96 44.46 29.54 68.60 2.03 46.48 15 9 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 12 C 0.47 22.69 7.25 71.24 0.52 23.20 15 13 O -0.53 -28.30 14.67 21.99 0.32 -27.98 15 14 O -0.33 -13.00 9.81 -51.32 -0.50 -13.50 15 15 C 0.01 0.24 3.33 30.56 0.10 0.35 15 16 H 0.12 3.67 7.15 -2.38 -0.02 3.66 15 17 C -0.14 -1.97 6.98 31.64 0.22 -1.75 15 18 C 0.05 0.58 7.90 72.51 0.57 1.15 15 19 O -0.35 -8.95 11.05 -50.13 -0.55 -9.50 15 20 C 0.47 16.20 8.26 71.44 0.59 16.79 15 21 O -0.49 -22.16 18.00 21.69 0.39 -21.76 15 22 H 0.08 4.34 6.07 -2.39 -0.01 4.33 15 23 H 0.02 1.02 8.14 -2.39 -0.02 1.00 15 24 H 0.05 2.11 8.11 -2.39 -0.02 2.09 15 25 H 0.27 14.03 8.31 -92.71 -0.77 13.26 15 26 H 0.14 1.08 8.14 -2.39 -0.02 1.06 15 27 H 0.12 1.57 8.06 -2.39 -0.02 1.55 15 28 H 0.12 0.69 8.14 -2.39 -0.02 0.67 15 29 H 0.16 0.63 8.14 -2.39 -0.02 0.61 15 Total: -1.00 -75.20 259.91 6.36 -68.84 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: 1.16 Total: -0.12 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 3.27 Total: 7.75 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.24 Total: -50.20 kcal Atomic # 8 Polarization: -72.41 SS G_CDS: -0.34 Total: -72.75 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -75.20 6.36 -68.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849848448.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.542 kcal (2) G-P(sol) polarization free energy of solvation -75.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds