Wall clock time and date at job start Mon Mar 30 2020 03:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45640 * 117.70448 * 2 1 4 4 C 1.52510 * 110.81041 * 201.76231 * 3 2 1 5 5 H 1.09002 * 109.59415 * 73.21114 * 4 3 2 6 6 C 1.50702 * 109.60479 * 193.70735 * 4 3 2 7 7 O 1.20832 * 119.99802 * 71.39087 * 6 4 3 8 8 O 1.34229 * 119.99966 * 251.39358 * 6 4 3 9 9 N 1.47275 * 108.44029 * 313.46442 * 4 3 2 10 10 C 1.36938 * 121.35049 * 241.52157 * 9 4 3 11 11 H 1.07999 * 120.00683 * 37.24823 * 10 9 4 12 12 C 1.38813 * 119.99390 * 217.25131 * 10 9 4 13 13 N 1.31623 * 119.99542 * 190.16476 * 12 10 9 14 14 Si 1.86795 * 120.00576 * 10.16182 * 12 10 9 15 15 H 1.48498 * 109.47261 * 275.51414 * 14 12 10 16 16 H 1.48503 * 109.46979 * 35.50897 * 14 12 10 17 17 H 1.48494 * 109.47652 * 155.50801 * 14 12 10 18 18 C 1.47042 * 117.29215 * 61.24527 * 9 4 3 19 19 C 1.33387 * 117.70708 * 179.97438 * 2 1 3 20 20 O 1.21283 * 118.48320 * 355.67720 * 19 2 1 21 21 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47171 * 300.01277 * 1 2 3 23 23 H 1.08996 * 109.47678 * 60.01799 * 1 2 3 24 24 H 1.09002 * 109.21844 * 322.21517 * 3 2 1 25 25 H 1.09000 * 109.22133 * 81.59442 * 3 2 1 26 26 H 0.96705 * 116.99442 * 179.97438 * 8 6 4 27 27 H 0.97006 * 119.99850 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.56971 * 77.33818 * 18 9 4 29 29 H 1.09004 * 109.56888 * 197.69345 * 18 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1421 1.2894 0.0000 4 6 3.5662 1.1536 -0.5286 5 1 3.5426 0.9995 -1.6074 6 6 4.3453 2.4036 -0.2097 7 8 4.6708 2.6383 0.9300 8 8 4.6774 3.2562 -1.1918 9 7 4.1972 -0.0055 0.1252 10 6 5.3100 0.1378 0.9102 11 1 5.4142 1.0042 1.5465 12 6 6.3043 -0.8306 0.8879 13 7 7.2721 -0.8007 1.7795 14 14 6.2688 -2.1763 -0.4072 15 1 5.3869 -3.2801 0.0499 16 1 5.7477 -1.6222 -1.6826 17 1 7.6436 -2.6963 -0.6186 18 6 3.5799 -1.3219 -0.0943 19 6 2.0852 -1.1809 0.0005 20 8 1.4130 -2.1872 0.0813 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3634 0.5135 -0.8901 24 1 1.5887 1.9853 -0.6306 25 1 2.1757 1.6771 1.0182 26 1 5.1770 4.0445 -0.9383 27 1 7.9667 -1.4777 1.7643 28 1 3.8499 -1.6914 -1.0835 29 1 3.9295 -2.0204 0.6661 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885841277.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:04 Heat of formation + Delta-G solvation = -77.564435 kcal Electronic energy + Delta-G solvation = -16734.991059 eV Core-core repulsion = 13852.966306 eV Total energy + Delta-G solvation = -2882.024753 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34815 -39.35779 -36.44699 -35.45625 -34.74935 -31.95099 -30.18195 -28.11002 -25.43214 -24.73244 -22.98262 -20.63630 -18.72893 -17.71575 -17.39704 -16.83079 -16.00356 -15.79743 -14.93792 -14.85627 -14.61392 -14.12773 -13.53338 -13.02872 -12.72612 -12.58422 -12.38299 -12.27865 -11.85278 -11.52114 -11.33110 -10.97383 -10.58204 -10.48011 -10.05711 -9.64283 -9.16758 -8.76953 -8.49162 -7.18177 -6.06090 -3.65625 2.63659 3.00990 3.15086 3.25192 3.34830 3.37932 3.58656 4.37521 4.59304 4.99263 5.04156 5.22222 5.37746 5.51482 5.54391 5.64610 5.76362 5.93224 5.97505 6.16658 6.18568 6.60135 6.93748 7.58651 7.74387 8.14592 8.45245 8.49485 8.86097 9.50691 9.78049 11.06404 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.015145 C = 0.009928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.688528 B = 1848.356474 C = 2819.744491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.601 5.601 3 C 0.111 3.889 4 C 0.168 3.832 5 H 0.075 0.925 6 C 0.492 3.508 7 O -0.475 6.475 8 O -0.524 6.524 9 N -0.592 5.592 10 C -0.293 4.293 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.897 5.897 14 Si 0.875 3.125 15 H -0.277 1.277 16 H -0.269 1.269 17 H -0.295 1.295 18 C 0.118 3.882 19 C 0.511 3.489 20 O -0.565 6.565 21 H 0.090 0.910 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.405 0.595 27 H 0.267 0.733 28 H 0.067 0.933 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 6.146 -6.817 13.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.334 5.334 3 C -0.014 4.014 4 C 0.061 3.939 5 H 0.093 0.907 6 C 0.331 3.669 7 O -0.358 6.358 8 O -0.336 6.336 9 N -0.321 5.321 10 C -0.421 4.421 11 H 0.137 0.863 12 C -0.160 4.160 13 N -0.537 5.537 14 Si 0.704 3.296 15 H -0.204 1.204 16 H -0.194 1.194 17 H -0.223 1.223 18 C -0.009 4.009 19 C 0.300 3.700 20 O -0.444 6.444 21 H 0.108 0.892 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.263 0.737 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.664 5.266 -6.456 12.759 hybrid contribution 0.516 -0.231 -0.503 0.757 sum -9.147 5.035 -6.960 12.548 Atomic orbital electron populations 1.21746 0.80321 1.04423 1.00872 1.46982 1.06958 1.06003 1.73495 1.21648 0.92591 0.84702 1.02453 1.20187 0.90220 0.85497 0.98019 0.90747 1.22701 0.77769 0.83729 0.82723 1.90677 1.49722 1.72907 1.22532 1.84505 1.70332 1.36046 1.42670 1.44193 1.31759 0.99603 1.56524 1.19546 0.92877 1.11440 1.18197 0.86324 1.25552 0.94883 0.98446 0.97087 1.69744 1.13914 1.35465 1.34617 0.87096 0.76626 0.82536 0.83361 1.20352 1.19417 1.22263 1.21750 0.86621 0.89971 1.02545 1.21288 0.92141 0.82347 0.74252 1.90629 1.66447 1.35890 1.51385 0.89150 0.92513 0.92492 0.90371 0.90755 0.73689 0.92281 0.91542 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.43 59.85 0.62 1.54 15 2 N -0.60 -10.16 3.20 -183.08 -0.59 -10.75 15 3 C 0.11 1.72 5.90 -4.76 -0.03 1.70 15 4 C 0.17 3.11 3.40 -68.91 -0.23 2.87 15 5 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 6 C 0.49 9.06 6.63 36.01 0.24 9.30 15 7 O -0.48 -10.44 14.71 -18.75 -0.28 -10.72 15 8 O -0.52 -7.48 13.42 -39.26 -0.53 -8.01 15 9 N -0.59 -13.63 2.67 -167.75 -0.45 -14.07 15 10 C -0.29 -8.02 8.94 -15.06 -0.13 -8.15 15 11 H 0.12 3.59 5.44 -52.49 -0.29 3.30 15 12 C 0.04 1.19 5.38 -17.43 -0.09 1.09 15 13 N -0.90 -27.07 13.97 55.49 0.78 -26.29 15 14 Si 0.88 21.44 24.23 -169.99 -4.12 17.32 15 15 H -0.28 -6.61 6.65 56.52 0.38 -6.24 15 16 H -0.27 -6.32 6.60 56.52 0.37 -5.95 15 17 H -0.30 -7.34 7.11 56.52 0.40 -6.94 15 18 C 0.12 2.60 4.32 -5.03 -0.02 2.57 15 19 C 0.51 10.41 7.58 -11.73 -0.09 10.32 15 20 O -0.56 -12.53 15.97 5.55 0.09 -12.44 15 21 H 0.09 1.32 6.59 -51.93 -0.34 0.97 15 22 H 0.06 0.66 8.14 -51.93 -0.42 0.23 15 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 15 24 H 0.08 0.90 8.07 -51.93 -0.42 0.48 15 25 H 0.07 1.23 8.00 -51.93 -0.42 0.81 15 26 H 0.41 3.98 9.10 45.56 0.41 4.39 15 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 15 28 H 0.07 1.42 6.07 -51.93 -0.32 1.10 15 29 H 0.11 2.67 6.02 -51.93 -0.31 2.36 15 LS Contribution 243.15 15.07 3.66 3.66 Total: -1.00 -33.96 243.15 -3.30 -37.26 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -2.13 Total: 2.81 kcal Atomic # 6 Polarization: 20.97 SS G_CDS: 0.26 Total: 21.23 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.26 Total: -51.11 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.71 Total: -31.17 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.12 Total: 17.32 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -33.96 -3.30 -37.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885841277.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.307 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds