Wall clock time and date at job start Mon Mar 30 2020 03:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45640 * 117.70448 * 2 1 4 4 C 1.52510 * 110.81041 * 201.76231 * 3 2 1 5 5 H 1.09002 * 109.59415 * 73.21114 * 4 3 2 6 6 C 1.50702 * 109.60479 * 193.70735 * 4 3 2 7 7 O 1.20832 * 119.99802 * 71.39087 * 6 4 3 8 8 O 1.34229 * 119.99966 * 251.39358 * 6 4 3 9 9 N 1.47275 * 108.44029 * 313.46442 * 4 3 2 10 10 C 1.36938 * 121.35049 * 241.52157 * 9 4 3 11 11 H 1.07999 * 120.00683 * 37.24823 * 10 9 4 12 12 C 1.38813 * 119.99390 * 217.25131 * 10 9 4 13 13 N 1.31623 * 119.99542 * 190.16476 * 12 10 9 14 14 Si 1.86795 * 120.00576 * 10.16182 * 12 10 9 15 15 H 1.48498 * 109.47261 * 275.51414 * 14 12 10 16 16 H 1.48503 * 109.46979 * 35.50897 * 14 12 10 17 17 H 1.48494 * 109.47652 * 155.50801 * 14 12 10 18 18 C 1.47042 * 117.29215 * 61.24527 * 9 4 3 19 19 C 1.33387 * 117.70708 * 179.97438 * 2 1 3 20 20 O 1.21283 * 118.48320 * 355.67720 * 19 2 1 21 21 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47171 * 300.01277 * 1 2 3 23 23 H 1.08996 * 109.47678 * 60.01799 * 1 2 3 24 24 H 1.09002 * 109.21844 * 322.21517 * 3 2 1 25 25 H 1.09000 * 109.22133 * 81.59442 * 3 2 1 26 26 H 0.96705 * 116.99442 * 179.97438 * 8 6 4 27 27 H 0.97006 * 119.99850 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.56971 * 77.33818 * 18 9 4 29 29 H 1.09004 * 109.56888 * 197.69345 * 18 9 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1421 1.2894 0.0000 4 6 3.5662 1.1536 -0.5286 5 1 3.5426 0.9995 -1.6074 6 6 4.3453 2.4036 -0.2097 7 8 4.6708 2.6383 0.9300 8 8 4.6774 3.2562 -1.1918 9 7 4.1972 -0.0055 0.1252 10 6 5.3100 0.1378 0.9102 11 1 5.4142 1.0042 1.5465 12 6 6.3043 -0.8306 0.8879 13 7 7.2721 -0.8007 1.7795 14 14 6.2688 -2.1763 -0.4072 15 1 5.3869 -3.2801 0.0499 16 1 5.7477 -1.6222 -1.6826 17 1 7.6436 -2.6963 -0.6186 18 6 3.5799 -1.3219 -0.0943 19 6 2.0852 -1.1809 0.0005 20 8 1.4130 -2.1872 0.0813 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3634 0.5135 -0.8901 24 1 1.5887 1.9853 -0.6306 25 1 2.1757 1.6771 1.0182 26 1 5.1770 4.0445 -0.9383 27 1 7.9667 -1.4777 1.7643 28 1 3.8499 -1.6914 -1.0835 29 1 3.9295 -2.0204 0.6661 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885841277.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:03 Heat of formation + Delta-G solvation = -105.658120 kcal Electronic energy + Delta-G solvation = -16736.209293 eV Core-core repulsion = 13852.966306 eV Total energy + Delta-G solvation = -2883.242987 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.83607 -40.82015 -37.99235 -36.87454 -36.33143 -33.92442 -31.73962 -29.69228 -26.92844 -26.13335 -24.76648 -22.11582 -20.40224 -19.20263 -18.94880 -18.38690 -17.48343 -17.38413 -16.51616 -16.35817 -16.32416 -15.63280 -15.13162 -14.54913 -14.47923 -14.12987 -13.89511 -13.66238 -13.07642 -13.04701 -12.95778 -12.58145 -12.35486 -12.23747 -11.78033 -11.38455 -10.90264 -10.79096 -9.81026 -9.06234 -8.20162 -5.77736 1.16816 1.31284 1.36566 1.43480 1.46921 1.83586 2.21853 2.35630 2.89690 3.11980 3.57053 3.73747 4.09148 4.22205 4.32969 4.37866 4.48367 4.55777 4.65322 4.84604 4.97535 5.33223 5.66903 5.76374 6.16422 6.27647 6.68163 6.99507 7.17038 7.41268 7.76188 8.95973 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.015145 C = 0.009928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.688528 B = 1848.356474 C = 2819.744491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.596 5.596 3 C 0.116 3.884 4 C 0.159 3.841 5 H 0.104 0.896 6 C 0.497 3.503 7 O -0.520 6.520 8 O -0.506 6.506 9 N -0.607 5.607 10 C -0.276 4.276 11 H 0.084 0.916 12 C -0.017 4.017 13 N -0.950 5.950 14 Si 0.934 3.066 15 H -0.272 1.272 16 H -0.248 1.248 17 H -0.303 1.303 18 C 0.115 3.885 19 C 0.510 3.490 20 O -0.590 6.590 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.134 0.866 25 H 0.063 0.937 26 H 0.427 0.573 27 H 0.265 0.735 28 H 0.079 0.921 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.472 7.087 -9.067 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.327 5.327 3 C -0.008 4.008 4 C 0.052 3.948 5 H 0.122 0.878 6 C 0.338 3.662 7 O -0.407 6.407 8 O -0.319 6.319 9 N -0.336 5.336 10 C -0.404 4.404 11 H 0.102 0.898 12 C -0.214 4.214 13 N -0.594 5.594 14 Si 0.761 3.239 15 H -0.198 1.198 16 H -0.171 1.171 17 H -0.231 1.231 18 C -0.012 4.012 19 C 0.298 3.702 20 O -0.471 6.471 21 H 0.092 0.908 22 H 0.094 0.906 23 H 0.114 0.886 24 H 0.152 0.848 25 H 0.081 0.919 26 H 0.288 0.712 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.776 6.275 -8.757 15.961 hybrid contribution 1.066 -0.350 0.206 1.140 sum -10.711 5.924 -8.551 14.931 Atomic orbital electron populations 1.21999 0.77504 1.04281 1.03678 1.47034 1.08723 1.05298 1.71676 1.21716 0.91368 0.84791 1.02958 1.20541 0.91213 0.83758 0.99249 0.87814 1.22743 0.77008 0.83981 0.82435 1.90684 1.51549 1.74014 1.24459 1.84440 1.70074 1.36543 1.40886 1.44174 1.31019 1.01375 1.57060 1.19323 0.93808 1.09700 1.17599 0.89845 1.26197 0.94886 1.01211 0.99077 1.69894 1.15442 1.37110 1.36920 0.86127 0.76186 0.79981 0.81608 1.19752 1.17146 1.23056 1.21654 0.88225 0.89132 1.02203 1.20809 0.91214 0.83334 0.74888 1.90623 1.66552 1.36966 1.52954 0.90802 0.90643 0.88643 0.84825 0.91903 0.71181 0.92563 0.90420 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.48 10.43 127.77 1.33 2.81 15 2 N -0.60 -18.09 3.20 -852.30 -2.73 -20.82 15 3 C 0.12 3.13 5.90 86.38 0.51 3.64 15 4 C 0.16 5.38 3.40 43.94 0.15 5.53 15 5 H 0.10 3.00 8.14 -2.39 -0.02 2.98 15 6 C 0.50 17.31 6.63 71.24 0.47 17.79 15 7 O -0.52 -22.81 14.71 21.95 0.32 -22.48 15 8 O -0.51 -12.79 13.42 -51.41 -0.69 -13.48 15 9 N -0.61 -27.25 2.67 -684.64 -1.83 -29.07 15 10 C -0.28 -15.29 8.94 84.03 0.75 -14.54 15 11 H 0.08 5.23 5.44 -2.91 -0.02 5.21 15 12 C -0.02 -0.98 5.38 84.86 0.46 -0.52 15 13 N -0.95 -59.40 13.97 21.65 0.30 -59.10 15 14 Si 0.93 44.60 24.23 68.60 1.66 46.27 15 15 H -0.27 -12.59 6.65 99.48 0.66 -11.92 15 16 H -0.25 -10.80 6.60 99.48 0.66 -10.15 15 17 H -0.30 -14.67 7.11 99.48 0.71 -13.96 15 18 C 0.11 4.90 4.32 85.45 0.37 5.27 15 19 C 0.51 19.78 7.58 87.79 0.67 20.45 15 20 O -0.59 -25.39 15.97 -3.04 -0.05 -25.44 15 21 H 0.07 1.94 6.59 -2.39 -0.02 1.92 15 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.10 1.44 8.14 -2.39 -0.02 1.42 15 24 H 0.13 2.24 8.07 -2.39 -0.02 2.22 15 25 H 0.06 1.90 8.00 -2.39 -0.02 1.88 15 26 H 0.43 7.11 9.10 -74.05 -0.67 6.43 15 27 H 0.27 15.72 8.31 -92.70 -0.77 14.94 15 28 H 0.08 3.13 6.07 -2.39 -0.01 3.12 15 29 H 0.09 4.12 6.02 -2.38 -0.01 4.11 15 Total: -1.00 -76.22 243.15 2.12 -74.10 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.42 Total: 9.61 kcal Atomic # 6 Polarization: 35.72 SS G_CDS: 4.71 Total: 40.43 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -4.25 Total: -108.99 kcal Atomic # 8 Polarization: -60.99 SS G_CDS: -0.42 Total: -61.41 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.66 Total: 46.27 kcal Total: -76.22 2.12 -74.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885841277.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.556 kcal (2) G-P(sol) polarization free energy of solvation -76.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds