Wall clock time and date at job start Mon Mar 30 2020 02:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47278 * 270.00132 * 3 2 1 5 5 H 1.48501 * 109.47077 * 30.00037 * 3 2 1 6 6 H 1.48504 * 109.47334 * 150.00096 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99899 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.47509 * 59.99732 * 9 7 2 11 11 C 1.50697 * 109.47030 * 179.97438 * 9 7 2 12 12 C 1.38240 * 120.00054 * 59.72530 * 11 9 7 13 13 C 1.38234 * 119.99640 * 179.80785 * 12 11 9 14 14 C 1.38236 * 120.00635 * 0.39898 * 13 12 11 15 15 C 1.38232 * 119.99590 * 359.85446 * 14 13 12 16 16 C 1.38231 * 120.00030 * 239.99439 * 11 9 7 17 17 N 1.46502 * 109.46753 * 299.99485 * 9 7 2 18 18 C 1.34942 * 126.03991 * 324.97777 * 17 9 7 19 19 C 1.35316 * 107.74613 * 179.75096 * 18 17 9 20 20 C 1.39870 * 107.92161 * 0.39436 * 19 18 17 21 21 N 1.30836 * 108.20019 * 359.59732 * 20 19 18 22 22 H 0.96997 * 119.99882 * 359.97438 * 1 2 3 23 23 H 1.07994 * 119.99861 * 359.97438 * 12 11 9 24 24 H 1.08005 * 119.99645 * 180.22964 * 13 12 11 25 25 H 1.07991 * 120.00368 * 179.83666 * 14 13 12 26 26 H 1.07997 * 120.00322 * 179.97438 * 15 14 13 27 27 H 1.08000 * 120.00017 * 359.97438 * 16 11 9 28 28 H 1.08002 * 126.12737 * 359.97438 * 18 17 9 29 29 H 1.07998 * 126.04386 * 180.27449 * 19 18 17 30 30 H 1.08002 * 125.90382 * 179.86983 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8896 11 6 2.2303 -3.6446 0.0005 12 6 3.1382 -3.7777 1.0344 13 6 4.0338 -4.8307 1.0364 14 6 4.0271 -5.7459 0.0004 15 6 3.1227 -5.6097 -1.0361 16 6 2.2244 -4.5589 -1.0361 17 7 0.4084 -2.5765 1.1965 18 6 0.7135 -2.0853 2.4158 19 6 -0.3243 -2.3557 3.2409 20 6 -1.2932 -3.0434 2.5028 21 7 -0.8565 -3.1733 1.2763 22 1 -0.4850 0.8400 0.0004 23 1 3.1459 -3.0607 1.8419 24 1 4.7407 -4.9368 1.8461 25 1 4.7286 -6.5669 0.0006 26 1 3.1177 -6.3244 -1.8458 27 1 1.5177 -4.4527 -1.8459 28 1 1.6217 -1.5660 2.6840 29 1 -0.3918 -2.0895 4.2854 30 1 -2.2402 -3.4011 2.8790 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020728.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:02 Heat of formation + Delta-G solvation = 97.003843 kcal Electronic energy + Delta-G solvation = -15298.315676 eV Core-core repulsion = 12867.002786 eV Total energy + Delta-G solvation = -2431.312890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86313 -38.45861 -34.25581 -31.81320 -30.38563 -29.48379 -28.68198 -26.60769 -23.66394 -22.00105 -20.99644 -19.65321 -19.34711 -16.92064 -16.40494 -15.46672 -15.03562 -14.48330 -14.06832 -13.47946 -13.09239 -12.88963 -12.71933 -12.32309 -12.00385 -11.76771 -11.40626 -11.22510 -11.04783 -10.68689 -10.50666 -10.03148 -9.83404 -9.36073 -8.89058 -8.37689 -8.15489 -8.00144 -7.27398 -6.37234 -4.57067 1.91580 1.95310 3.11575 3.20824 3.22789 3.36130 3.97667 4.03933 4.13020 4.52130 5.07862 5.39107 5.42864 5.54339 5.77291 5.95841 6.06685 6.13212 6.16567 6.48866 6.57155 6.64447 6.78382 6.98052 7.01220 7.03305 7.20583 7.39116 7.53461 7.55379 7.70928 7.98989 8.42508 8.65534 9.14006 9.16208 10.65060 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.020596 B = 0.011767 C = 0.008825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.169260 B = 2379.024514 C = 3171.877541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.306 3.694 10 H 0.067 0.933 11 C -0.061 4.061 12 C -0.099 4.099 13 C -0.129 4.129 14 C -0.137 4.137 15 C -0.127 4.127 16 C -0.113 4.113 17 N -0.298 5.298 18 C 0.090 3.910 19 C -0.319 4.319 20 C 0.013 3.987 21 N -0.314 5.314 22 H 0.270 0.730 23 H 0.120 0.880 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.152 0.848 29 H 0.122 0.878 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 -5.570 2.030 7.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.209 3.791 10 H 0.085 0.915 11 C -0.062 4.062 12 C -0.117 4.117 13 C -0.147 4.147 14 C -0.155 4.155 15 C -0.146 4.146 16 C -0.132 4.132 17 N -0.077 5.077 18 C -0.061 4.061 19 C -0.350 4.350 20 C -0.171 4.171 21 N -0.137 5.137 22 H 0.080 0.920 23 H 0.138 0.862 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.170 0.830 29 H 0.140 0.860 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.538 -5.914 0.705 7.488 hybrid contribution 0.514 1.408 0.895 1.746 sum 5.052 -4.505 1.601 6.956 Atomic orbital electron populations 1.70042 1.06111 1.27889 1.43685 1.25173 0.94906 0.99924 0.93281 0.86424 0.79914 0.82249 0.78635 1.20094 1.20807 1.19288 1.21194 0.93556 0.88544 1.54735 0.90676 1.18054 0.86212 0.91132 0.83694 0.91492 1.20564 0.96305 0.95538 0.93806 1.21057 0.94730 0.97271 0.98675 1.21066 0.99460 0.95610 0.98566 1.20958 0.99724 0.99564 0.95302 1.21006 0.96589 0.98347 0.98615 1.21079 0.98986 0.94344 0.98755 1.50037 1.11214 1.38050 1.08447 1.22003 0.99531 0.98210 0.86346 1.21124 0.97616 1.15593 1.00621 1.23337 0.99746 1.02038 0.91985 1.77065 0.96694 1.20467 1.19449 0.92019 0.86173 0.86856 0.87024 0.86817 0.86394 0.83039 0.85954 0.82522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.18 12.77 55.43 0.71 -22.47 16 2 C 0.08 1.98 5.12 -17.82 -0.09 1.88 16 3 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.54 -13.59 7.48 -34.44 -0.26 -13.85 16 8 H 0.08 1.85 7.59 -52.49 -0.40 1.45 16 9 C 0.31 7.48 2.81 -70.23 -0.20 7.28 16 10 H 0.07 1.80 7.87 -51.93 -0.41 1.39 16 11 C -0.06 -1.30 4.94 -104.63 -0.52 -1.81 16 12 C -0.10 -1.93 8.82 -39.58 -0.35 -2.27 16 13 C -0.13 -2.14 10.05 -39.58 -0.40 -2.53 16 14 C -0.14 -2.13 10.05 -39.58 -0.40 -2.52 16 15 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 16 C -0.11 -2.15 9.67 -39.58 -0.38 -2.54 16 17 N -0.30 -7.32 2.78 -57.13 -0.16 -7.48 16 18 C 0.09 2.07 9.34 -17.23 -0.16 1.91 16 19 C -0.32 -6.83 10.80 -40.01 -0.43 -7.27 16 20 C 0.01 0.28 12.03 -17.37 -0.21 0.07 16 21 N -0.31 -7.82 12.58 30.62 0.39 -7.44 16 22 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 23 H 0.12 2.33 7.03 -52.49 -0.37 1.96 16 24 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 25 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 26 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.12 2.13 7.95 -52.49 -0.42 1.71 16 28 H 0.15 3.25 7.65 -52.49 -0.40 2.85 16 29 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.16 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 266.83 15.07 4.02 4.02 Total: -1.00 -28.87 266.83 -7.10 -35.97 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -3.24 Total: 6.75 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -3.79 Total: -24.12 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.93 Total: -37.38 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.87 -7.10 -35.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020728.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.975 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds