Wall clock time and date at job start Mon Mar 30 2020 02:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47278 * 270.00132 * 3 2 1 5 5 H 1.48501 * 109.47077 * 30.00037 * 3 2 1 6 6 H 1.48504 * 109.47334 * 150.00096 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99899 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.47509 * 59.99732 * 9 7 2 11 11 C 1.50697 * 109.47030 * 179.97438 * 9 7 2 12 12 C 1.38240 * 120.00054 * 59.72530 * 11 9 7 13 13 C 1.38234 * 119.99640 * 179.80785 * 12 11 9 14 14 C 1.38236 * 120.00635 * 0.39898 * 13 12 11 15 15 C 1.38232 * 119.99590 * 359.85446 * 14 13 12 16 16 C 1.38231 * 120.00030 * 239.99439 * 11 9 7 17 17 N 1.46502 * 109.46753 * 299.99485 * 9 7 2 18 18 C 1.34942 * 126.03991 * 324.97777 * 17 9 7 19 19 C 1.35316 * 107.74613 * 179.75096 * 18 17 9 20 20 C 1.39870 * 107.92161 * 0.39436 * 19 18 17 21 21 N 1.30836 * 108.20019 * 359.59732 * 20 19 18 22 22 H 0.96997 * 119.99882 * 359.97438 * 1 2 3 23 23 H 1.07994 * 119.99861 * 359.97438 * 12 11 9 24 24 H 1.08005 * 119.99645 * 180.22964 * 13 12 11 25 25 H 1.07991 * 120.00368 * 179.83666 * 14 13 12 26 26 H 1.07997 * 120.00322 * 179.97438 * 15 14 13 27 27 H 1.08000 * 120.00017 * 359.97438 * 16 11 9 28 28 H 1.08002 * 126.12737 * 359.97438 * 18 17 9 29 29 H 1.07998 * 126.04386 * 180.27449 * 19 18 17 30 30 H 1.08002 * 125.90382 * 179.86983 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8896 11 6 2.2303 -3.6446 0.0005 12 6 3.1382 -3.7777 1.0344 13 6 4.0338 -4.8307 1.0364 14 6 4.0271 -5.7459 0.0004 15 6 3.1227 -5.6097 -1.0361 16 6 2.2244 -4.5589 -1.0361 17 7 0.4084 -2.5765 1.1965 18 6 0.7135 -2.0853 2.4158 19 6 -0.3243 -2.3557 3.2409 20 6 -1.2932 -3.0434 2.5028 21 7 -0.8565 -3.1733 1.2763 22 1 -0.4850 0.8400 0.0004 23 1 3.1459 -3.0607 1.8419 24 1 4.7407 -4.9368 1.8461 25 1 4.7286 -6.5669 0.0006 26 1 3.1177 -6.3244 -1.8458 27 1 1.5177 -4.4527 -1.8459 28 1 1.6217 -1.5660 2.6840 29 1 -0.3918 -2.0895 4.2854 30 1 -2.2402 -3.4011 2.8790 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020728.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:02 Heat of formation + Delta-G solvation = 81.310319 kcal Electronic energy + Delta-G solvation = -15298.996199 eV Core-core repulsion = 12867.002786 eV Total energy + Delta-G solvation = -2431.993412 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.61668 -39.89260 -36.04424 -33.62467 -31.76529 -31.09037 -30.43782 -28.43953 -25.44370 -23.39190 -22.53260 -21.39331 -21.10005 -18.82794 -17.85147 -17.23873 -16.65653 -16.05788 -15.59252 -15.10842 -14.78169 -14.51145 -14.19294 -14.01470 -13.53317 -13.42491 -13.14047 -12.88174 -12.80900 -12.32899 -11.96917 -11.71849 -11.59779 -11.17695 -10.84763 -9.87421 -9.73606 -9.57207 -9.03891 -8.32084 -6.58940 0.51394 0.58024 1.36617 1.39789 1.50500 1.57176 2.25035 2.30505 2.32598 3.04412 3.14761 4.05975 4.11778 4.23956 4.31291 4.33038 4.42643 4.66761 4.75124 4.92664 5.02821 5.16809 5.19329 5.29456 5.46238 5.52513 5.64285 5.65683 5.78392 5.92049 6.21212 6.27262 6.50177 6.79940 7.17735 7.36420 8.69636 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.020596 B = 0.011767 C = 0.008825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.169260 B = 2379.024514 C = 3171.877541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.034 3.966 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.309 3.691 10 H 0.022 0.978 11 C -0.090 4.090 12 C -0.116 4.116 13 C -0.125 4.125 14 C -0.127 4.127 15 C -0.121 4.121 16 C -0.135 4.135 17 N -0.308 5.308 18 C 0.075 3.925 19 C -0.316 4.316 20 C 0.013 3.987 21 N -0.358 5.358 22 H 0.267 0.733 23 H 0.111 0.889 24 H 0.146 0.854 25 H 0.155 0.845 26 H 0.148 0.852 27 H 0.111 0.889 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.721 -6.649 3.045 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.172 4.172 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.584 4.584 8 H 0.094 0.906 9 C 0.212 3.788 10 H 0.040 0.960 11 C -0.092 4.092 12 C -0.135 4.135 13 C -0.143 4.143 14 C -0.145 4.145 15 C -0.139 4.139 16 C -0.154 4.154 17 N -0.087 5.087 18 C -0.076 4.076 19 C -0.346 4.346 20 C -0.171 4.171 21 N -0.181 5.181 22 H 0.076 0.924 23 H 0.129 0.871 24 H 0.164 0.836 25 H 0.173 0.827 26 H 0.165 0.835 27 H 0.129 0.871 28 H 0.176 0.824 29 H 0.174 0.826 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 6.360 -7.003 1.723 9.615 hybrid contribution -0.045 1.624 0.588 1.728 sum 6.315 -5.379 2.311 8.611 Atomic orbital electron populations 1.70186 1.07738 1.28283 1.45728 1.25935 0.95442 1.03104 0.92717 0.85431 0.78953 0.78071 0.78605 1.19874 1.20969 1.18033 1.21394 0.93584 0.89226 1.54188 0.90582 1.17781 0.86063 0.92685 0.82315 0.95980 1.20400 0.97059 0.95778 0.95924 1.21075 0.95635 0.98649 0.98093 1.21442 0.98759 0.94343 0.99761 1.21469 0.99326 0.99835 0.93833 1.21386 0.95293 0.97458 0.99789 1.21211 1.00310 0.95481 0.98386 1.49837 1.11307 1.38727 1.08827 1.22330 1.00506 0.98547 0.86235 1.21531 0.96586 1.14539 1.01983 1.24004 1.00966 1.01023 0.91081 1.77016 0.97400 1.22289 1.21444 0.92424 0.87074 0.83606 0.82743 0.83454 0.87077 0.82359 0.82638 0.78890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.29 12.77 21.45 0.27 -50.02 16 2 C 0.03 1.77 5.12 84.66 0.43 2.20 16 3 Si 0.97 41.09 29.54 68.60 2.03 43.11 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.55 -28.28 7.48 25.60 0.19 -28.09 16 8 H 0.08 3.83 7.59 -2.91 -0.02 3.81 16 9 C 0.31 15.88 2.81 43.50 0.12 16.00 16 10 H 0.02 1.30 7.87 -2.39 -0.02 1.28 16 11 C -0.09 -3.95 4.94 -19.87 -0.10 -4.05 16 12 C -0.12 -4.47 8.82 22.27 0.20 -4.28 16 13 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 14 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 15 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 16 C -0.14 -5.21 9.67 22.27 0.22 -5.00 16 17 N -0.31 -15.60 2.78 -334.67 -0.93 -16.53 16 18 C 0.07 3.45 9.34 83.54 0.78 4.23 16 19 C -0.32 -13.21 10.80 21.99 0.24 -12.98 16 20 C 0.01 0.54 12.03 85.24 1.03 1.57 16 21 N -0.36 -18.29 12.58 -57.02 -0.72 -19.01 16 22 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 23 H 0.11 4.35 7.03 -2.91 -0.02 4.33 16 24 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 25 H 0.15 2.90 8.06 -2.92 -0.02 2.88 16 26 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 27 H 0.11 4.25 7.95 -2.91 -0.02 4.23 16 28 H 0.16 6.89 7.65 -2.91 -0.02 6.87 16 29 H 0.16 5.32 8.06 -2.91 -0.02 5.29 16 30 H 0.19 6.60 8.06 -2.91 -0.02 6.57 16 Total: -1.00 -64.51 266.83 5.55 -58.95 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 1.13 Total: 24.05 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 3.77 Total: -40.56 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.37 Total: -85.56 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -64.51 5.55 -58.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020728.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.265 kcal (2) G-P(sol) polarization free energy of solvation -64.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds