Wall clock time and date at job start Mon Mar 30 2020 02:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 12 12 C 1.38237 * 119.99958 * 299.72270 * 11 9 7 13 13 C 1.38227 * 120.00034 * 179.79278 * 12 11 9 14 14 C 1.38238 * 120.00073 * 0.43917 * 13 12 11 15 15 C 1.38239 * 119.99922 * 359.81687 * 14 13 12 16 16 C 1.38233 * 119.99970 * 120.00207 * 11 9 7 17 17 N 1.46496 * 109.47316 * 59.71937 * 9 7 2 18 18 C 1.36884 * 126.39875 * 240.00446 * 17 9 7 19 19 C 1.34673 * 106.81851 * 179.97438 * 18 17 9 20 20 N 1.34133 * 108.02021 * 359.97438 * 19 18 17 21 21 C 1.30499 * 109.25414 * 359.72794 * 20 19 18 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.99768 * 359.97438 * 12 11 9 24 24 H 1.08000 * 120.00454 * 180.27837 * 13 12 11 25 25 H 1.08005 * 120.00102 * 179.83316 * 14 13 12 26 26 H 1.07996 * 120.00503 * 180.02562 * 15 14 13 27 27 H 1.07997 * 119.99952 * 359.97392 * 16 11 9 28 28 H 1.07996 * 126.58964 * 0.02823 * 18 17 9 29 29 H 1.07993 * 125.99189 * 179.97438 * 19 18 17 30 30 H 1.08006 * 125.64808 * 180.29309 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 6 2.2302 -3.6447 -0.0104 12 6 3.1306 -3.7797 -1.0506 13 6 4.0317 -4.8278 -1.0530 14 6 4.0264 -5.7463 -0.0199 15 6 3.1225 -5.6143 1.0177 16 6 2.2243 -4.5636 1.0223 17 7 0.4087 -2.5715 -1.2019 18 6 -0.9541 -2.6968 -1.2296 19 6 -1.3166 -2.7238 -2.5263 20 7 -0.2055 -2.6174 -3.2701 21 6 0.8312 -2.5195 -2.4835 22 1 -0.4850 0.8401 -0.0004 23 1 3.1319 -3.0644 -1.8598 24 1 4.7382 -4.9308 -1.8634 25 1 4.7287 -6.5668 -0.0232 26 1 3.1186 -6.3315 1.8251 27 1 1.5181 -4.4604 1.8328 28 1 -1.6122 -2.7607 -0.3757 29 1 -2.3251 -2.8152 -2.9016 30 1 1.8574 -2.4171 -2.8044 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055020740.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:04 Heat of formation + Delta-G solvation = 83.347124 kcal Electronic energy + Delta-G solvation = -15342.140086 eV Core-core repulsion = 12910.234996 eV Total energy + Delta-G solvation = -2431.905090 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73498 -38.60348 -34.45134 -31.96496 -30.48722 -30.11371 -28.07224 -26.78647 -23.71053 -22.13603 -20.97262 -19.84887 -19.66071 -17.15047 -16.45712 -15.52837 -15.06174 -14.52914 -14.01819 -13.70414 -13.13714 -12.97092 -12.63128 -12.54137 -12.31130 -11.95052 -11.83411 -11.20515 -11.09519 -10.73959 -10.53469 -10.06430 -9.86644 -9.00893 -8.72033 -8.45310 -8.22858 -8.16274 -7.19796 -6.38887 -4.55375 1.84250 1.87491 3.12130 3.22407 3.24926 3.50855 4.11020 4.16844 4.37441 4.55476 5.09974 5.32355 5.34801 5.47429 5.58615 5.84694 5.99375 6.07195 6.26767 6.32547 6.46390 6.53644 6.64800 6.88821 6.91310 6.95482 7.25275 7.46116 7.49733 7.63780 7.84243 8.06238 8.44758 8.70954 9.17609 9.34416 10.64804 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.020759 B = 0.011735 C = 0.008882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.480838 B = 2385.438549 C = 3151.543000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.284 3.716 10 H 0.065 0.935 11 C -0.061 4.061 12 C -0.101 4.101 13 C -0.126 4.126 14 C -0.136 4.136 15 C -0.126 4.126 16 C -0.117 4.117 17 N -0.398 5.398 18 C -0.019 4.019 19 C -0.073 4.073 20 N -0.524 5.524 21 C 0.175 3.825 22 H 0.269 0.731 23 H 0.124 0.876 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 -6.895 1.768 8.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.091 0.909 9 C 0.185 3.815 10 H 0.083 0.917 11 C -0.062 4.062 12 C -0.120 4.120 13 C -0.144 4.144 14 C -0.154 4.154 15 C -0.145 4.145 16 C -0.135 4.135 17 N -0.075 5.075 18 C -0.158 4.158 19 C -0.222 4.222 20 N -0.244 5.244 21 C -0.108 4.108 22 H 0.079 0.921 23 H 0.142 0.858 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.135 0.865 28 H 0.168 0.832 29 H 0.164 0.836 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.971 -6.769 1.083 7.923 hybrid contribution 0.303 1.110 0.981 1.512 sum 4.274 -5.659 2.064 7.386 Atomic orbital electron populations 1.69963 1.06099 1.27793 1.45022 1.25110 0.94962 0.99895 0.93107 0.86355 0.80217 0.82582 0.77947 1.19273 1.20560 1.20601 1.21208 0.93505 0.88605 1.54493 0.90935 1.18187 0.87661 0.91631 0.84041 0.91747 1.20441 0.96693 0.95133 0.93950 1.21187 0.94710 0.97413 0.98647 1.21097 0.99241 0.95498 0.98577 1.20985 0.99655 0.99523 0.95264 1.21005 0.96537 0.98337 0.98579 1.21047 0.99305 0.94453 0.98731 1.46455 1.06117 1.47001 1.07940 1.22308 0.85347 1.09353 0.98786 1.21828 0.97135 1.12987 0.90255 1.70076 0.98180 1.21916 1.34252 1.24260 0.98911 1.06888 0.80739 0.92145 0.85821 0.86667 0.86936 0.86784 0.86479 0.83189 0.83588 0.80148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.79 12.28 55.43 0.68 -22.11 16 2 C 0.08 2.00 5.39 -17.82 -0.10 1.90 16 3 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.42 8.09 -34.44 -0.28 -13.70 16 8 H 0.07 1.80 7.61 -52.49 -0.40 1.40 16 9 C 0.28 6.49 2.53 -70.24 -0.18 6.32 16 10 H 0.06 1.55 7.82 -51.93 -0.41 1.15 16 11 C -0.06 -1.22 4.92 -104.62 -0.51 -1.74 16 12 C -0.10 -1.88 8.32 -39.59 -0.33 -2.21 16 13 C -0.13 -2.00 10.05 -39.59 -0.40 -2.39 16 14 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 15 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 16 C -0.12 -2.06 9.67 -39.58 -0.38 -2.44 16 17 N -0.40 -9.26 2.00 -113.94 -0.23 -9.49 16 18 C -0.02 -0.44 10.99 -16.56 -0.18 -0.62 16 19 C -0.07 -1.65 11.87 -17.81 -0.21 -1.86 16 20 N -0.52 -12.59 11.25 -14.66 -0.16 -12.76 16 21 C 0.17 4.08 10.90 -90.37 -0.99 3.09 16 22 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 23 H 0.12 2.31 5.59 -52.48 -0.29 2.01 16 24 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 25 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 26 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 27 H 0.12 1.90 7.95 -52.49 -0.42 1.49 16 28 H 0.15 3.13 8.06 -52.49 -0.42 2.71 16 29 H 0.15 2.85 8.06 -52.49 -0.42 2.42 16 30 H 0.18 3.83 5.96 -52.48 -0.31 3.52 16 LS Contribution 262.71 15.07 3.96 3.96 Total: -1.00 -28.45 262.71 -8.20 -36.65 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.08 Total: 7.00 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -4.35 Total: -18.39 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.29 Total: -44.36 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.45 -8.20 -36.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020740.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.002 kcal (2) G-P(sol) polarization free energy of solvation -28.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds