Wall clock time and date at job start Mon Mar 30 2020 03:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99952 * 2 1 4 4 O 1.20826 * 120.00173 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99822 * 179.97438 * 3 2 1 6 6 C 1.52999 * 110.02097 * 307.16695 * 5 3 2 7 7 C 1.50701 * 109.47250 * 300.06490 * 6 5 3 8 8 H 1.07999 * 119.99996 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00137 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00190 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00062 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.46837 * 89.99502 * 11 9 7 13 13 H 1.48493 * 109.47096 * 209.99443 * 11 9 7 14 14 H 1.48503 * 109.46823 * 329.99539 * 11 9 7 15 15 C 1.54267 * 110.03022 * 185.77713 * 5 3 2 16 16 C 1.54892 * 104.19498 * 217.10627 * 15 5 3 17 17 C 1.54885 * 102.74777 * 37.94414 * 16 15 5 18 18 C 1.53875 * 110.03322 * 68.61343 * 5 3 2 19 19 H 1.09000 * 110.03313 * 238.57080 * 18 5 3 20 20 O 1.42902 * 110.02939 * 359.97438 * 18 5 3 21 21 H 1.08996 * 109.47084 * 60.00005 * 1 2 3 22 22 H 1.09003 * 109.47340 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47173 * 299.99715 * 1 2 3 24 24 H 1.09002 * 109.46688 * 60.06104 * 6 5 3 25 25 H 1.09000 * 109.47255 * 180.02562 * 6 5 3 26 26 H 0.96999 * 120.00621 * 180.02562 * 10 9 7 27 27 H 1.08998 * 110.48676 * 98.43080 * 15 5 3 28 28 H 1.09004 * 110.60081 * 335.83869 * 15 5 3 29 29 H 1.09004 * 110.75637 * 279.62953 * 16 15 5 30 30 H 1.09003 * 110.91254 * 156.33103 * 16 15 5 31 31 H 1.09000 * 110.48497 * 80.73574 * 17 16 15 32 32 H 1.09003 * 110.48445 * 203.37421 * 17 16 15 33 33 H 0.96706 * 113.99500 * 178.62195 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1343 0.4352 1.1465 7 6 3.6091 0.9562 2.4594 8 1 2.9376 1.8019 2.4750 9 6 3.9857 0.3532 3.6407 10 7 3.5278 0.8082 4.7864 11 14 5.1478 -1.1091 3.6139 12 1 6.5502 -0.6286 3.7007 13 1 4.8556 -1.9948 4.7694 14 1 4.9613 -1.8664 2.3502 15 6 4.0184 2.7425 0.1464 16 6 5.2703 2.8461 -0.7599 17 6 4.8905 1.9574 -1.9702 18 6 4.1208 0.7757 -1.3452 19 1 4.7952 -0.0650 -1.1824 20 8 3.0465 0.3828 -2.2017 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 3.8308 -0.6041 1.0205 25 1 5.2225 0.4988 1.1389 26 1 3.7930 0.3843 5.6176 27 1 4.2783 2.9605 1.1822 28 1 3.2388 3.4204 -0.2012 29 1 6.1494 2.4505 -0.2510 30 1 5.4387 3.8760 -1.0745 31 1 4.2508 2.5068 -2.6610 32 1 5.7868 1.6026 -2.4791 33 1 3.3307 0.0780 -3.0744 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075599793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:43 Heat of formation + Delta-G solvation = -148.546110 kcal Electronic energy + Delta-G solvation = -17122.042791 eV Core-core repulsion = 14340.480385 eV Total energy + Delta-G solvation = -2781.562406 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.15926 -38.03474 -35.65830 -34.85952 -32.92350 -30.90444 -27.52802 -27.15591 -26.29499 -22.17834 -21.89145 -20.61435 -18.53276 -17.27895 -16.79760 -16.34054 -15.90103 -15.24794 -14.69196 -14.28528 -13.83147 -13.62628 -12.90495 -12.54305 -12.48242 -12.16035 -11.87408 -11.56851 -11.44470 -11.20714 -10.75222 -10.61153 -10.46305 -10.32831 -9.95975 -9.93090 -9.71703 -9.49740 -9.42623 -9.14785 -8.57398 -6.07273 -4.06918 3.21108 3.29551 3.36272 3.39189 3.59897 4.41520 4.44406 4.85130 4.96414 5.26062 5.31779 5.60214 5.63139 5.68259 5.77555 5.85627 5.91054 6.00497 6.02636 6.10238 6.16035 6.34331 6.46215 6.80065 6.97758 7.02976 7.20076 7.30771 7.66704 7.86585 8.45541 8.71354 8.96934 9.52823 11.05566 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.023015 B = 0.011938 C = 0.009920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.318880 B = 2344.969991 C = 2821.803204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.341 6.341 3 C 0.518 3.482 4 O -0.532 6.532 5 C -0.033 4.033 6 C 0.000 4.000 7 C -0.524 4.524 8 H 0.076 0.924 9 C 0.073 3.927 10 N -0.897 5.897 11 Si 0.875 3.125 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.263 1.263 15 C -0.108 4.108 16 C -0.121 4.121 17 C -0.157 4.157 18 C 0.107 3.893 19 H 0.069 0.931 20 O -0.561 6.561 21 H 0.052 0.948 22 H 0.090 0.910 23 H 0.057 0.943 24 H 0.031 0.969 25 H 0.027 0.973 26 H 0.264 0.736 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -1.475 -13.028 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.256 6.256 3 C 0.362 3.638 4 O -0.422 6.422 5 C -0.034 4.034 6 C -0.037 4.037 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.535 5.535 11 Si 0.702 3.298 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.188 1.188 15 C -0.146 4.146 16 C -0.158 4.158 17 C -0.195 4.195 18 C 0.048 3.952 19 H 0.087 0.913 20 O -0.366 6.366 21 H 0.071 0.929 22 H 0.108 0.892 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.373 -1.059 -12.298 12.420 hybrid contribution 0.714 -0.913 -0.270 1.190 sum 2.087 -1.972 -12.568 12.892 Atomic orbital electron populations 1.23056 0.78344 1.02483 1.01611 1.86510 1.21621 1.33714 1.83755 1.22886 0.91088 0.80655 0.69131 1.90520 1.67148 1.36759 1.47746 1.21191 0.87894 0.99089 0.95263 1.19737 0.96203 0.95262 0.92495 1.21024 1.29618 1.16842 0.88663 0.90618 1.24951 0.95836 0.96761 0.95361 1.69907 1.44611 1.41346 0.97661 0.86843 0.81477 0.83345 0.78097 1.20160 1.21267 1.18796 1.22473 0.96715 0.93152 1.02229 1.22417 0.98708 0.99192 0.95502 1.23128 0.99945 0.97655 0.98745 1.22682 0.87851 0.95596 0.89064 0.91307 1.86607 1.34418 1.87182 1.28370 0.92936 0.89151 0.92382 0.95032 0.95504 0.92626 0.88498 0.90566 0.91031 0.91451 0.90821 0.91538 0.78180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.56 101.05 1.07 1.76 16 2 O -0.34 -7.48 9.75 -44.69 -0.44 -7.91 16 3 C 0.52 11.98 4.64 36.00 0.17 12.15 16 4 O -0.53 -13.19 15.14 -18.75 -0.28 -13.47 16 5 C -0.03 -0.70 0.61 -154.54 -0.09 -0.79 16 6 C 0.00 0.01 2.76 -27.88 -0.08 -0.07 16 7 C -0.52 -14.72 7.98 -34.44 -0.27 -14.99 16 8 H 0.08 2.36 7.27 -52.49 -0.38 1.98 16 9 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 10 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 11 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 15 C -0.11 -2.13 5.43 -25.07 -0.14 -2.26 16 16 C -0.12 -1.82 6.91 -24.74 -0.17 -1.99 16 17 C -0.16 -2.14 6.55 -25.08 -0.16 -2.30 16 18 C 0.11 1.77 3.89 -25.61 -0.10 1.67 16 19 H 0.07 1.07 7.67 -51.93 -0.40 0.67 16 20 O -0.56 -8.89 11.38 -50.22 -0.57 -9.46 16 21 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 22 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 23 H 0.06 1.05 8.13 -51.93 -0.42 0.63 16 24 H 0.03 0.76 7.09 -51.93 -0.37 0.40 16 25 H 0.03 0.60 7.57 -51.93 -0.39 0.20 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.10 2.11 6.70 -51.93 -0.35 1.76 16 28 H 0.08 1.55 6.82 -51.93 -0.35 1.20 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.37 3.82 9.10 45.56 0.41 4.23 16 LS Contribution 270.69 15.07 4.08 4.08 Total: -1.00 -33.66 270.69 -4.94 -38.60 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.95 Total: 3.11 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 0.12 Total: -4.83 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.67 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.29 Total: -30.85 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.66 -4.94 -38.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.951 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds