Wall clock time and date at job start Mon Mar 30 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.53001 * 110.01518 * 300.42119 * 5 3 2 7 7 C 1.50703 * 109.47200 * 59.29881 * 6 5 3 8 8 H 1.08003 * 119.99689 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00217 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00261 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00070 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47318 * 89.99701 * 11 9 7 13 13 H 1.48503 * 109.46934 * 209.99866 * 11 9 7 14 14 H 1.48507 * 109.47019 * 329.99524 * 11 9 7 15 15 C 1.53878 * 110.03093 * 61.81049 * 5 3 2 16 16 C 1.54265 * 106.59708 * 119.28799 * 15 5 3 17 17 C 1.54895 * 104.19821 * 23.61131 * 16 15 5 18 18 C 1.54267 * 110.03629 * 179.02982 * 5 3 2 19 19 H 1.09000 * 110.48249 * 335.78497 * 18 5 3 20 20 O 1.42899 * 110.48478 * 98.42298 * 18 5 3 21 21 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 23 23 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 24 24 H 1.08999 * 109.47385 * 179.29462 * 6 5 3 25 25 H 1.08998 * 109.47352 * 299.29775 * 6 5 3 26 26 H 0.96988 * 120.00616 * 180.02562 * 10 9 7 27 27 H 1.09000 * 110.03068 * 238.57220 * 15 5 3 28 28 H 1.08998 * 110.03140 * 0.02562 * 15 5 3 29 29 H 1.09008 * 110.48493 * 142.28741 * 16 15 5 30 30 H 1.08992 * 110.48934 * 264.80014 * 16 15 5 31 31 H 1.09001 * 110.75715 * 80.36982 * 17 16 15 32 32 H 1.08992 * 110.75859 * 203.74257 * 17 16 15 33 33 H 0.96700 * 113.99678 * 179.97438 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.1326 0.5728 1.2295 7 6 3.6980 -0.8702 1.2308 8 1 3.0793 -1.2484 0.4304 9 6 4.0893 -1.7071 2.2542 10 7 4.8422 -1.2464 3.2290 11 14 3.5511 -3.4960 2.2553 12 1 4.5569 -4.3160 1.5335 13 1 3.4333 -3.9765 3.6555 14 1 2.2351 -3.6174 1.5779 15 6 4.1230 0.6234 -1.2842 16 6 4.8936 1.7250 -2.0408 17 6 5.2713 2.7481 -0.9409 18 6 4.0180 2.7499 -0.0295 19 1 3.2379 3.3811 -0.4550 20 8 4.3564 3.1901 1.2872 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 5.2212 0.6243 1.2098 25 1 3.7619 1.0647 2.1288 26 1 5.1178 -1.8352 3.9488 27 1 4.7973 -0.1925 -1.0240 28 1 3.3046 0.2505 -1.9001 29 1 5.7908 1.3138 -2.5036 30 1 4.2557 2.1888 -2.7931 31 1 6.1496 2.4145 -0.3882 32 1 5.4369 3.7354 -1.3720 33 1 4.6479 4.1110 1.3312 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075599797.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:45 Heat of formation + Delta-G solvation = -147.794732 kcal Electronic energy + Delta-G solvation = -17095.450058 eV Core-core repulsion = 14313.920234 eV Total energy + Delta-G solvation = -2781.529824 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.20908 -37.98985 -35.60891 -34.74582 -32.91645 -30.54276 -27.27477 -27.05022 -26.04081 -22.47687 -21.82566 -20.53916 -18.63657 -17.10945 -16.54928 -16.34866 -15.58047 -15.35237 -14.42454 -14.19628 -13.87646 -13.31283 -12.87760 -12.74672 -12.32486 -11.84793 -11.72101 -11.56464 -11.29981 -10.95499 -10.79416 -10.72674 -10.55314 -10.28110 -10.07304 -9.94502 -9.46009 -9.36449 -9.10625 -8.91428 -8.26779 -5.90414 -3.90847 3.01611 3.36690 3.43495 3.47469 3.49837 4.53098 4.70786 4.95015 5.11695 5.38023 5.45124 5.57686 5.61971 5.68497 5.77757 5.89728 5.93744 5.99249 6.02038 6.19393 6.28772 6.38687 6.57981 6.73207 6.98218 7.12884 7.75693 7.85575 8.10888 8.18349 8.45077 8.59339 9.18712 9.71647 11.20856 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.011612 C = 0.009589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.841374 B = 2410.652069 C = 2919.313749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.491 3.509 4 O -0.540 6.540 5 C -0.046 4.046 6 C 0.051 3.949 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.888 3.112 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.273 1.273 15 C -0.102 4.102 16 C -0.124 4.124 17 C -0.153 4.153 18 C 0.110 3.890 19 H 0.068 0.932 20 O -0.544 6.544 21 H 0.093 0.907 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.258 0.742 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 5.314 -8.967 10.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.337 3.663 4 O -0.430 6.430 5 C -0.048 4.048 6 C 0.014 3.986 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.717 3.283 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.198 1.198 15 C -0.140 4.140 16 C -0.162 4.162 17 C -0.191 4.191 18 C 0.051 3.949 19 H 0.086 0.914 20 O -0.348 6.348 21 H 0.112 0.888 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.381 4.897 -8.654 10.225 hybrid contribution -0.409 -0.376 0.051 0.558 sum -2.791 4.521 -8.603 10.111 Atomic orbital electron populations 1.23159 0.79112 1.02834 1.01404 1.86870 1.20945 1.32568 1.83137 1.23727 0.91990 0.80798 0.69819 1.90530 1.67599 1.36863 1.48054 1.21351 0.86545 0.94947 1.01917 1.19005 0.96627 0.93915 0.89077 1.21497 1.30940 0.94441 1.08425 0.90770 1.24976 0.95376 0.98395 0.95593 1.69988 1.36504 1.35492 1.11558 0.86650 0.79123 0.85595 0.76970 1.20841 1.21556 1.19781 1.22157 1.00061 0.98438 0.93309 1.22301 1.00048 0.96625 0.97192 1.23169 0.99380 0.99007 0.97522 1.22597 0.94982 0.94442 0.82890 0.91401 1.86727 1.88726 1.31471 1.27856 0.88845 0.92490 0.93023 0.94749 0.95220 0.93197 0.88559 0.92150 0.91311 0.92163 0.90043 0.91818 0.78866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 101.05 1.07 1.56 16 2 O -0.32 -6.91 7.69 -39.26 -0.30 -7.21 16 3 C 0.49 10.94 6.29 36.00 0.23 11.16 16 4 O -0.54 -12.35 15.16 -18.76 -0.28 -12.63 16 5 C -0.05 -0.99 0.61 -154.54 -0.09 -1.09 16 6 C 0.05 1.32 3.18 -27.88 -0.09 1.23 16 7 C -0.51 -14.15 7.18 -34.44 -0.25 -14.39 16 8 H 0.07 1.98 5.64 -52.48 -0.30 1.68 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 11 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 C -0.10 -1.87 5.52 -25.61 -0.14 -2.01 16 16 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 17 C -0.15 -2.30 6.62 -24.69 -0.16 -2.47 16 18 C 0.11 2.04 3.41 -25.03 -0.09 1.95 16 19 H 0.07 1.25 6.89 -51.93 -0.36 0.89 16 20 O -0.54 -10.47 11.78 -35.23 -0.42 -10.89 16 21 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 22 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 23 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 24 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.03 0.87 7.50 -51.93 -0.39 0.48 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.10 1.89 7.19 -51.93 -0.37 1.52 16 28 H 0.06 1.05 7.64 -51.93 -0.40 0.65 16 29 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.37 4.91 9.12 45.56 0.42 5.33 16 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -33.02 271.84 -4.90 -37.92 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -3.91 Total: 2.81 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 0.20 Total: -4.50 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.00 Total: -30.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.02 -4.90 -37.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599797.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.872 kcal (2) G-P(sol) polarization free energy of solvation -33.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds