Wall clock time and date at job start Mon Mar 30 2020 03:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.53001 * 110.01518 * 300.42119 * 5 3 2 7 7 C 1.50703 * 109.47200 * 59.29881 * 6 5 3 8 8 H 1.08003 * 119.99689 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00217 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00261 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00070 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47318 * 89.99701 * 11 9 7 13 13 H 1.48503 * 109.46934 * 209.99866 * 11 9 7 14 14 H 1.48507 * 109.47019 * 329.99524 * 11 9 7 15 15 C 1.53878 * 110.03093 * 61.81049 * 5 3 2 16 16 C 1.54265 * 106.59708 * 119.28799 * 15 5 3 17 17 C 1.54895 * 104.19821 * 23.61131 * 16 15 5 18 18 C 1.54267 * 110.03629 * 179.02982 * 5 3 2 19 19 H 1.09000 * 110.48249 * 335.78497 * 18 5 3 20 20 O 1.42899 * 110.48478 * 98.42298 * 18 5 3 21 21 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 23 23 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 24 24 H 1.08999 * 109.47385 * 179.29462 * 6 5 3 25 25 H 1.08998 * 109.47352 * 299.29775 * 6 5 3 26 26 H 0.96988 * 120.00616 * 180.02562 * 10 9 7 27 27 H 1.09000 * 110.03068 * 238.57220 * 15 5 3 28 28 H 1.08998 * 110.03140 * 0.02562 * 15 5 3 29 29 H 1.09008 * 110.48493 * 142.28741 * 16 15 5 30 30 H 1.08992 * 110.48934 * 264.80014 * 16 15 5 31 31 H 1.09001 * 110.75715 * 80.36982 * 17 16 15 32 32 H 1.08992 * 110.75859 * 203.74257 * 17 16 15 33 33 H 0.96700 * 113.99678 * 179.97438 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.1326 0.5728 1.2295 7 6 3.6980 -0.8702 1.2308 8 1 3.0793 -1.2484 0.4304 9 6 4.0893 -1.7071 2.2542 10 7 4.8422 -1.2464 3.2290 11 14 3.5511 -3.4960 2.2553 12 1 4.5569 -4.3160 1.5335 13 1 3.4333 -3.9765 3.6555 14 1 2.2351 -3.6174 1.5779 15 6 4.1230 0.6234 -1.2842 16 6 4.8936 1.7250 -2.0408 17 6 5.2713 2.7481 -0.9409 18 6 4.0180 2.7499 -0.0295 19 1 3.2379 3.3811 -0.4550 20 8 4.3564 3.1901 1.2872 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 5.2212 0.6243 1.2098 25 1 3.7619 1.0647 2.1288 26 1 5.1178 -1.8352 3.9488 27 1 4.7973 -0.1925 -1.0240 28 1 3.3046 0.2505 -1.9001 29 1 5.7908 1.3138 -2.5036 30 1 4.2557 2.1888 -2.7931 31 1 6.1496 2.4145 -0.3882 32 1 5.4369 3.7354 -1.3720 33 1 4.6479 4.1110 1.3312 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075599797.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:44 Heat of formation + Delta-G solvation = -171.251324 kcal Electronic energy + Delta-G solvation = -17096.467212 eV Core-core repulsion = 14313.920234 eV Total energy + Delta-G solvation = -2782.546978 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.84922 -39.49731 -37.29282 -36.27254 -34.91571 -32.28829 -28.78464 -28.50216 -27.80619 -24.48812 -23.40672 -21.82678 -20.25124 -18.88275 -18.25409 -17.94075 -17.26667 -17.10744 -16.38381 -15.49572 -15.38774 -14.78418 -14.46644 -14.34539 -14.14843 -13.45169 -13.29093 -13.25602 -12.91904 -12.75033 -12.61355 -12.20917 -12.08191 -11.85564 -11.64401 -11.47118 -11.17009 -11.03522 -10.93397 -10.71693 -10.46315 -8.08866 -6.16213 1.28683 1.43925 1.44992 1.56444 1.95769 2.48344 3.24979 3.35520 3.55656 3.78287 4.01883 4.22838 4.32683 4.34743 4.40836 4.49896 4.54908 4.67971 4.73631 4.79451 5.03411 5.15644 5.20494 5.31106 5.44697 5.52673 5.61202 5.67470 5.92600 6.30283 6.86612 6.96904 7.08211 7.50840 9.03470 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.011612 C = 0.009589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.841374 B = 2410.652069 C = 2919.313749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.341 6.341 3 C 0.487 3.513 4 O -0.551 6.551 5 C -0.057 4.057 6 C 0.069 3.931 7 C -0.518 4.518 8 H 0.083 0.917 9 C -0.002 4.002 10 N -0.939 5.939 11 Si 0.956 3.044 12 H -0.271 1.271 13 H -0.291 1.291 14 H -0.260 1.260 15 C -0.101 4.101 16 C -0.115 4.115 17 C -0.143 4.143 18 C 0.107 3.893 19 H 0.072 0.928 20 O -0.575 6.575 21 H 0.123 0.877 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.009 0.991 25 H -0.019 1.019 26 H 0.259 0.741 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 5.045 -11.021 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.256 6.256 3 C 0.333 3.667 4 O -0.443 6.443 5 C -0.058 4.058 6 C 0.031 3.969 7 C -0.555 4.555 8 H 0.101 0.899 9 C -0.199 4.199 10 N -0.580 5.580 11 Si 0.782 3.218 12 H -0.197 1.197 13 H -0.217 1.217 14 H -0.184 1.184 15 C -0.139 4.139 16 C -0.152 4.152 17 C -0.180 4.180 18 C 0.049 3.951 19 H 0.090 0.910 20 O -0.383 6.383 21 H 0.141 0.859 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.027 0.973 25 H 0.000 1.000 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.876 4.640 -10.730 12.039 hybrid contribution -0.322 -0.254 0.728 0.836 sum -3.198 4.385 -10.002 11.379 Atomic orbital electron populations 1.23507 0.76515 1.05080 1.02111 1.86795 1.23647 1.32317 1.82838 1.23879 0.92363 0.80907 0.69589 1.90504 1.67926 1.37165 1.48725 1.21439 0.86308 0.96993 1.01033 1.18631 0.94930 0.93695 0.89598 1.21848 1.30313 0.95092 1.08286 0.89888 1.25899 0.95518 1.03170 0.95302 1.70142 1.38156 1.37210 1.12487 0.85572 0.79365 0.79991 0.76922 1.19694 1.21743 1.18393 1.22126 1.00284 0.99084 0.92385 1.22321 1.00819 0.95085 0.96999 1.23124 0.96882 1.01285 0.96749 1.22691 0.96838 0.92428 0.83192 0.90975 1.86673 1.89034 1.33698 1.28876 0.85919 0.93102 0.91043 0.97262 1.00021 0.93272 0.90620 0.91252 0.89121 0.89762 0.91377 0.88015 0.76200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 10.56 113.37 1.20 1.87 16 2 O -0.34 -14.43 7.69 -51.41 -0.40 -14.82 16 3 C 0.49 21.53 6.29 71.23 0.45 21.98 16 4 O -0.55 -24.93 15.16 21.94 0.33 -24.60 16 5 C -0.06 -2.42 0.61 -52.20 -0.03 -2.45 16 6 C 0.07 3.71 3.18 29.85 0.10 3.80 16 7 C -0.52 -28.89 7.18 25.60 0.18 -28.71 16 8 H 0.08 4.41 5.64 -2.91 -0.02 4.40 16 9 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 10 N -0.94 -58.25 13.29 21.45 0.28 -57.96 16 11 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 14 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 15 C -0.10 -3.58 5.52 31.32 0.17 -3.40 16 16 C -0.11 -3.00 6.83 31.67 0.22 -2.78 16 17 C -0.14 -3.96 6.62 31.91 0.21 -3.74 16 18 C 0.11 3.89 3.41 31.70 0.11 4.00 16 19 H 0.07 2.55 6.89 -2.39 -0.02 2.53 16 20 O -0.58 -22.47 11.78 -148.98 -1.76 -24.23 16 21 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 22 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 23 H 0.07 1.97 8.13 -2.38 -0.02 1.95 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H -0.02 -1.17 7.50 -2.39 -0.02 -1.19 16 26 H 0.26 15.19 8.31 -92.72 -0.77 14.42 16 27 H 0.08 2.96 7.19 -2.39 -0.02 2.94 16 28 H 0.07 2.29 7.64 -2.39 -0.02 2.27 16 29 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.39 10.34 9.12 -74.06 -0.68 9.66 16 Total: -1.00 -72.99 271.84 3.99 -69.00 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.43 Total: 15.11 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 3.06 Total: -9.11 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.28 Total: -57.96 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -1.82 Total: -63.65 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.99 3.99 -69.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599797.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.249 kcal (2) G-P(sol) polarization free energy of solvation -72.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds