Wall clock time and date at job start Mon Mar 30 2020 02:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38095 * 120.04325 * 2 1 4 4 C 1.38294 * 120.08273 * 180.29616 * 3 2 1 5 5 C 1.38333 * 120.16312 * 359.72248 * 4 3 2 6 6 C 1.38047 * 120.08153 * 359.97438 * 5 4 3 7 7 C 1.38976 * 120.04085 * 179.71999 * 2 1 3 8 8 N 1.39537 * 120.08396 * 359.97438 * 7 2 1 9 9 C 1.35945 * 120.00036 * 179.72428 * 8 7 2 10 10 C 1.39062 * 119.99653 * 179.97438 * 9 8 7 11 11 C 1.43203 * 120.00281 * 0.02562 * 10 9 8 12 12 N 5.44860 * 61.76322 * 179.64104 * 2 1 3 13 13 C 1.40875 * 119.99787 * 179.97438 * 10 9 8 14 14 H 1.07991 * 119.99827 * 0.02562 * 13 10 9 15 15 C 1.39688 * 119.99842 * 179.72679 * 13 10 9 16 16 N 1.31093 * 120.00230 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00065 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47045 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47313 * 119.99649 * 17 15 13 20 20 H 1.48501 * 109.46833 * 240.00098 * 17 15 13 21 21 H 1.08991 * 109.47310 * 270.28052 * 1 2 3 22 22 H 1.08998 * 109.46528 * 30.28017 * 1 2 3 23 23 H 1.08998 * 109.46788 * 150.27234 * 1 2 3 24 24 H 1.08005 * 119.95963 * 0.02562 * 3 2 1 25 25 H 1.08000 * 119.91825 * 179.74628 * 4 3 2 26 26 H 1.08001 * 119.95259 * 180.02562 * 5 4 3 27 27 H 1.07999 * 120.03823 * 180.02562 * 6 5 4 28 28 H 0.96996 * 119.99575 * 359.72540 * 8 7 2 29 29 H 1.07991 * 119.99961 * 0.02562 * 9 8 7 30 30 H 0.96995 * 120.00165 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1954 0.0000 4 6 3.5813 1.1964 -0.0062 5 6 4.2772 0.0008 -0.0066 6 6 3.5930 -1.1981 -0.0003 7 6 2.2028 -1.2031 0.0059 8 7 1.5077 -2.4130 0.0123 9 6 2.1900 -3.5888 0.0124 10 6 1.4972 -4.7946 0.0194 11 6 0.0652 -4.7977 0.0259 12 7 -1.0708 -4.8001 0.0301 13 6 2.2042 -6.0131 0.0189 14 1 3.2841 -6.0108 0.0136 15 6 1.5084 -7.2243 0.0317 16 7 0.1975 -7.2270 0.0446 17 14 2.4458 -8.8400 0.0318 18 1 3.9051 -8.5656 0.0165 19 1 2.0998 -9.6130 1.2517 20 1 2.0777 -9.6259 -1.1733 21 1 -0.3633 0.0050 1.0276 22 1 -0.3632 0.8875 -0.5182 23 1 -0.3633 -0.8924 -0.5096 24 1 1.6584 2.1308 0.0004 25 1 4.1193 2.1328 -0.0103 26 1 5.3572 0.0056 -0.0110 27 1 4.1370 -2.1311 -0.0002 28 1 0.5378 -2.4150 0.0167 29 1 3.2699 -3.5865 0.0079 30 1 -0.2856 -8.0681 0.0531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075599957.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:35 Heat of formation + Delta-G solvation = 40.981989 kcal Electronic energy + Delta-G solvation = -14439.227010 eV Core-core repulsion = 12005.484830 eV Total energy + Delta-G solvation = -2433.742180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.62713 -38.15836 -36.36742 -35.24179 -33.61480 -32.27384 -29.92326 -27.69532 -26.47424 -24.08810 -22.16463 -21.86631 -19.99154 -18.56588 -17.42617 -16.84579 -16.24113 -15.48883 -15.16994 -15.03147 -14.80105 -14.32982 -14.17233 -13.86089 -13.41101 -13.33431 -13.15490 -12.98543 -12.91330 -12.57933 -12.22722 -12.12956 -12.02191 -11.76111 -11.60113 -11.24689 -9.76333 -9.51417 -8.57562 -8.35628 -5.92164 0.47811 0.64178 1.26771 1.44982 1.61108 1.61264 2.23503 2.55051 2.75245 2.82574 3.09661 3.65048 3.91982 4.07810 4.10622 4.37369 4.49746 4.71103 4.74712 4.79380 4.90396 5.04162 5.17282 5.28771 5.36864 5.50802 5.70841 5.79064 5.86036 6.19762 6.28818 6.59991 6.80230 7.00991 7.10668 7.39729 8.40235 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.039484 B = 0.006259 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.974710 B = 4472.553942 C = 5166.373433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.184 4.184 3 C -0.079 4.079 4 C -0.186 4.186 5 C -0.081 4.081 6 C -0.205 4.205 7 C 0.179 3.821 8 N -0.649 5.649 9 C -0.057 4.057 10 C 0.014 3.986 11 C 0.309 3.691 12 N -0.528 5.528 13 C -0.445 4.445 14 H 0.107 0.893 15 C 0.007 3.993 16 N -0.867 5.867 17 Si 0.996 3.004 18 H -0.242 1.242 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.065 0.935 22 H 0.087 0.913 23 H 0.039 0.961 24 H 0.141 0.859 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.126 0.874 28 H 0.389 0.611 29 H 0.158 0.842 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.160 11.360 -0.075 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.189 4.189 3 C -0.097 4.097 4 C -0.206 4.206 5 C -0.099 4.099 6 C -0.228 4.228 7 C 0.075 3.925 8 N -0.264 5.264 9 C -0.180 4.180 10 C 0.004 3.996 11 C -0.002 4.002 12 N -0.209 5.209 13 C -0.479 4.479 14 H 0.125 0.875 15 C -0.202 4.202 16 N -0.498 5.498 17 Si 0.818 3.182 18 H -0.164 1.164 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.084 0.916 22 H 0.106 0.894 23 H 0.058 0.942 24 H 0.159 0.841 25 H 0.160 0.840 26 H 0.161 0.839 27 H 0.144 0.856 28 H 0.224 0.776 29 H 0.175 0.825 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.339 11.063 -0.066 12.751 hybrid contribution -0.192 -1.287 0.009 1.301 sum 6.147 9.776 -0.057 11.548 Atomic orbital electron populations 1.20595 0.91290 1.02290 1.01994 1.19616 0.96198 0.92150 1.10909 1.21024 0.94712 0.96561 0.97439 1.21191 0.94042 0.98589 1.06729 1.21177 1.00563 0.91468 0.96720 1.20930 0.91757 0.99858 1.10214 1.18095 0.92391 0.85298 0.96705 1.41329 1.07829 1.03065 1.74147 1.21101 0.96639 0.81919 1.18373 1.15817 0.81922 0.94600 1.07226 1.26276 0.93739 0.88508 0.91659 1.80734 1.14116 1.13857 1.12221 1.19478 0.95573 0.88694 1.44111 0.87546 1.26906 0.95628 1.05491 0.92213 1.69707 1.09085 1.29824 1.41136 0.84893 0.79774 0.75664 0.77855 1.16417 1.20282 1.20293 0.91615 0.89430 0.94249 0.84096 0.84005 0.83929 0.85605 0.77640 0.82465 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.88 9.57 71.24 0.68 -2.20 16 2 C -0.18 -5.56 5.90 -19.72 -0.12 -5.67 16 3 C -0.08 -1.95 9.70 22.25 0.22 -1.74 16 4 C -0.19 -4.25 10.04 22.31 0.22 -4.03 16 5 C -0.08 -2.01 10.04 22.25 0.22 -1.79 16 6 C -0.21 -6.33 9.30 22.41 0.21 -6.13 16 7 C 0.18 6.17 6.60 38.28 0.25 6.42 16 8 N -0.65 -25.57 5.26 -184.69 -0.97 -26.54 16 9 C -0.06 -2.41 9.89 84.25 0.83 -1.58 16 10 C 0.01 0.71 5.75 -21.19 -0.12 0.59 16 11 C 0.31 16.65 11.07 88.33 0.98 17.63 16 12 N -0.53 -29.41 18.18 19.00 0.35 -29.06 16 13 C -0.45 -21.88 9.10 23.27 0.21 -21.67 16 14 H 0.11 4.69 7.84 -2.92 -0.02 4.67 16 15 C 0.01 0.34 5.48 85.15 0.47 0.80 16 16 N -0.87 -47.54 10.49 21.79 0.23 -47.31 16 17 Si 1.00 37.94 29.56 68.60 2.03 39.97 16 18 H -0.24 -8.37 7.11 99.48 0.71 -7.66 16 19 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 21 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 23 H 0.04 1.21 6.56 -2.39 -0.02 1.20 16 24 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 25 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 26 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 27 H 0.13 3.78 5.96 -2.91 -0.02 3.76 16 28 H 0.39 15.95 5.41 -92.71 -0.50 15.44 16 29 H 0.16 5.93 5.90 -2.92 -0.02 5.91 16 30 H 0.28 14.57 8.30 -92.71 -0.77 13.80 16 Total: -1.00 -59.91 267.62 6.35 -53.56 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.67 Total: 28.73 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 4.06 Total: -19.35 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -0.40 Total: -102.91 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -59.91 6.35 -53.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599957.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.541 kcal (2) G-P(sol) polarization free energy of solvation -59.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds