Wall clock time and date at job start Mon Mar 30 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38328 * 119.95654 * 2 1 4 4 C 1.38293 * 120.16436 * 179.97438 * 3 2 1 5 5 C 1.38094 * 120.08019 * 359.95359 * 4 3 2 6 6 C 1.38975 * 119.92037 * 0.02588 * 5 4 3 7 7 N 1.39536 * 120.08655 * 180.02562 * 6 5 4 8 8 C 1.35942 * 119.99636 * 0.02562 * 7 6 5 9 9 C 1.39066 * 119.99812 * 179.97438 * 8 7 6 10 10 C 1.43201 * 120.00098 * 359.97438 * 9 8 7 11 11 N 6.82871 * 121.40218 * 179.97438 * 2 1 3 12 12 C 1.40873 * 119.99958 * 179.97438 * 9 8 7 13 13 H 1.08002 * 119.99650 * 359.97438 * 12 9 8 14 14 C 1.39688 * 119.99980 * 180.02562 * 12 9 8 15 15 N 1.31087 * 120.00085 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99879 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47484 * 0.02562 * 16 14 12 18 18 H 1.48511 * 109.47070 * 120.00153 * 16 14 12 19 19 H 1.48499 * 109.47227 * 239.99785 * 16 14 12 20 20 C 1.38052 * 119.96008 * 179.71747 * 2 1 3 21 21 H 1.09001 * 109.46953 * 89.99989 * 1 2 3 22 22 H 1.09000 * 109.47318 * 209.99587 * 1 2 3 23 23 H 1.09000 * 109.47161 * 330.00217 * 1 2 3 24 24 H 1.08001 * 119.92256 * 359.97438 * 3 2 1 25 25 H 1.07997 * 119.95926 * 179.97438 * 4 3 2 26 26 H 1.08000 * 120.04143 * 179.97438 * 5 4 3 27 27 H 0.96996 * 119.99720 * 179.97438 * 7 6 5 28 28 H 1.08007 * 120.00255 * 359.97438 * 8 7 6 29 29 H 0.97004 * 120.00657 * 180.02562 * 15 14 12 30 30 H 1.08002 * 120.03518 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1985 0.0000 4 6 3.5807 1.2035 0.0005 5 6 4.2772 0.0110 0.0020 6 6 3.5867 -1.1950 0.0025 7 7 4.2869 -2.4020 0.0045 8 6 5.6464 -2.3990 0.0066 9 6 6.3443 -3.6018 0.0092 10 6 5.6310 -4.8435 0.0102 11 7 5.0651 -5.8285 0.0026 12 6 7.7530 -3.5988 0.0109 13 1 8.2909 -2.6623 0.0097 14 6 8.4540 -4.8070 0.0129 15 7 7.8011 -5.9437 0.0128 16 14 10.3220 -4.8029 0.0144 17 1 10.8140 -3.4018 0.0136 18 1 10.8176 -5.5004 1.2282 19 1 10.8195 -5.5034 -1.1968 20 6 2.1965 -1.1960 0.0059 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6558 2.1327 -0.0004 25 1 4.1166 2.1411 0.0001 26 1 5.3572 0.0157 0.0020 27 1 3.8037 -3.2430 0.0052 28 1 6.1844 -1.4625 0.0063 29 1 8.2878 -6.7827 0.0146 30 1 1.6564 -2.1313 0.0101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075599958.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:38 Heat of formation + Delta-G solvation = 52.080315 kcal Electronic energy + Delta-G solvation = -14215.290558 eV Core-core repulsion = 11782.029638 eV Total energy + Delta-G solvation = -2433.260921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.13877 -36.60288 -34.89031 -33.45179 -32.00632 -30.86840 -28.50169 -26.52248 -24.79777 -22.22626 -21.62034 -19.97270 -18.17447 -16.96645 -15.97933 -15.16387 -15.13194 -14.16590 -13.62393 -13.61245 -13.31214 -12.90773 -12.69837 -12.41688 -12.01883 -11.96877 -11.60235 -11.35608 -11.31670 -10.93907 -10.81559 -10.64233 -10.49575 -10.31141 -10.09881 -9.54435 -8.36117 -8.13450 -6.87544 -6.79830 -4.16975 1.87340 1.91023 2.80109 3.02152 3.07817 3.21584 3.81859 4.31378 4.37546 4.51119 4.56219 5.18845 5.25995 5.49733 5.56959 5.63321 5.75055 5.79052 5.89881 5.97467 6.07665 6.31463 6.47206 6.72557 6.85495 7.01062 7.03429 7.11213 7.41599 7.46976 8.00365 8.24171 8.48224 8.65585 8.82582 9.30074 10.06804 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.045514 B = 0.005530 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.050477 B = 5061.741322 C = 5661.645010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.042 4.042 3 C -0.205 4.205 4 C -0.069 4.069 5 C -0.204 4.204 6 C 0.216 3.784 7 N -0.632 5.632 8 C -0.123 4.123 9 C 0.072 3.928 10 C 0.303 3.697 11 N -0.492 5.492 12 C -0.420 4.420 13 H 0.093 0.907 14 C 0.056 3.944 15 N -0.810 5.810 16 Si 0.926 3.074 17 H -0.258 1.258 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.213 4.213 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.392 0.608 28 H 0.138 0.862 29 H 0.286 0.714 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 10.097 -0.017 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.043 4.043 3 C -0.226 4.226 4 C -0.088 4.088 5 C -0.227 4.227 6 C 0.108 3.892 7 N -0.243 5.243 8 C -0.245 4.245 9 C 0.063 3.937 10 C -0.009 4.009 11 N -0.172 5.172 12 C -0.452 4.452 13 H 0.111 0.889 14 C -0.160 4.160 15 N -0.436 5.436 16 Si 0.751 3.249 17 H -0.181 1.181 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.236 4.236 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.126 0.874 25 H 0.131 0.869 26 H 0.142 0.858 27 H 0.226 0.774 28 H 0.155 0.845 29 H 0.097 0.903 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.733 8.289 -0.028 10.078 hybrid contribution 1.104 -0.236 -0.002 1.129 sum -4.629 8.053 -0.030 9.289 Atomic orbital electron populations 1.20758 0.92123 1.02128 1.01798 1.19466 0.94983 0.92750 0.97111 1.20551 0.94113 0.96601 1.11360 1.20777 0.93956 0.96974 0.97049 1.20674 0.99922 0.90870 1.11194 1.17860 0.90847 0.86541 0.93963 1.41153 1.05580 1.04950 1.72624 1.20693 0.81131 0.96700 1.25949 1.15523 0.92379 0.83323 1.02457 1.25867 0.89929 0.92632 0.92490 1.80791 1.15655 1.10463 1.10287 1.19235 0.89534 0.93873 1.42546 0.88888 1.26066 1.02244 0.95092 0.92617 1.69610 1.38170 0.98905 1.36931 0.85935 0.80793 0.79654 0.78520 1.18133 1.19923 1.19923 1.20335 0.92047 0.97671 1.13565 0.91604 0.91998 0.91963 0.87439 0.86904 0.85765 0.77393 0.84460 0.90251 0.87070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.04 -0.62 5.88 -104.65 -0.62 -1.24 16 3 C -0.21 -2.94 9.70 -39.53 -0.38 -3.32 16 4 C -0.07 -1.02 10.04 -39.61 -0.40 -1.41 16 5 C -0.20 -3.45 9.30 -39.36 -0.37 -3.82 16 6 C 0.22 3.93 6.62 -83.79 -0.55 3.38 16 7 N -0.63 -12.58 5.36 -9.72 -0.05 -12.63 16 8 C -0.12 -2.63 9.89 -15.42 -0.15 -2.78 16 9 C 0.07 1.75 5.75 -106.67 -0.61 1.13 16 10 C 0.30 7.82 11.07 -22.47 -0.25 7.57 16 11 N -0.49 -13.08 18.18 41.84 0.76 -12.32 16 12 C -0.42 -10.10 9.10 -38.04 -0.35 -10.45 16 13 H 0.09 2.06 7.84 -52.49 -0.41 1.65 16 14 C 0.06 1.35 5.48 -17.33 -0.09 1.25 16 15 N -0.81 -21.03 10.49 55.54 0.58 -20.45 16 16 Si 0.93 18.00 29.56 -169.99 -5.02 12.97 16 17 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 C -0.21 -3.53 9.55 -39.36 -0.38 -3.90 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 23 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 24 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 25 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 26 H 0.12 2.04 5.96 -52.49 -0.31 1.73 16 27 H 0.39 7.88 7.42 -40.82 -0.30 7.58 16 28 H 0.14 2.72 5.90 -52.48 -0.31 2.41 16 29 H 0.29 6.94 8.30 -40.82 -0.34 6.61 16 30 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 271.20 15.07 4.09 4.09 Total: -1.00 -26.86 271.20 -6.44 -33.29 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -3.00 Total: 9.52 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -3.79 Total: -14.48 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 1.29 Total: -45.39 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.02 Total: 12.97 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.86 -6.44 -33.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599958.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.372 kcal (2) G-P(sol) polarization free energy of solvation -26.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds