Wall clock time and date at job start Mon Mar 30 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38328 * 119.95654 * 2 1 4 4 C 1.38293 * 120.16436 * 179.97438 * 3 2 1 5 5 C 1.38094 * 120.08019 * 359.95359 * 4 3 2 6 6 C 1.38975 * 119.92037 * 0.02588 * 5 4 3 7 7 N 1.39536 * 120.08655 * 180.02562 * 6 5 4 8 8 C 1.35942 * 119.99636 * 0.02562 * 7 6 5 9 9 C 1.39066 * 119.99812 * 179.97438 * 8 7 6 10 10 C 1.43201 * 120.00098 * 359.97438 * 9 8 7 11 11 N 6.82871 * 121.40218 * 179.97438 * 2 1 3 12 12 C 1.40873 * 119.99958 * 179.97438 * 9 8 7 13 13 H 1.08002 * 119.99650 * 359.97438 * 12 9 8 14 14 C 1.39688 * 119.99980 * 180.02562 * 12 9 8 15 15 N 1.31087 * 120.00085 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99879 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47484 * 0.02562 * 16 14 12 18 18 H 1.48511 * 109.47070 * 120.00153 * 16 14 12 19 19 H 1.48499 * 109.47227 * 239.99785 * 16 14 12 20 20 C 1.38052 * 119.96008 * 179.71747 * 2 1 3 21 21 H 1.09001 * 109.46953 * 89.99989 * 1 2 3 22 22 H 1.09000 * 109.47318 * 209.99587 * 1 2 3 23 23 H 1.09000 * 109.47161 * 330.00217 * 1 2 3 24 24 H 1.08001 * 119.92256 * 359.97438 * 3 2 1 25 25 H 1.07997 * 119.95926 * 179.97438 * 4 3 2 26 26 H 1.08000 * 120.04143 * 179.97438 * 5 4 3 27 27 H 0.96996 * 119.99720 * 179.97438 * 7 6 5 28 28 H 1.08007 * 120.00255 * 359.97438 * 8 7 6 29 29 H 0.97004 * 120.00657 * 180.02562 * 15 14 12 30 30 H 1.08002 * 120.03518 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1985 0.0000 4 6 3.5807 1.2035 0.0005 5 6 4.2772 0.0110 0.0020 6 6 3.5867 -1.1950 0.0025 7 7 4.2869 -2.4020 0.0045 8 6 5.6464 -2.3990 0.0066 9 6 6.3443 -3.6018 0.0092 10 6 5.6310 -4.8435 0.0102 11 7 5.0651 -5.8285 0.0026 12 6 7.7530 -3.5988 0.0109 13 1 8.2909 -2.6623 0.0097 14 6 8.4540 -4.8070 0.0129 15 7 7.8011 -5.9437 0.0128 16 14 10.3220 -4.8029 0.0144 17 1 10.8140 -3.4018 0.0136 18 1 10.8176 -5.5004 1.2282 19 1 10.8195 -5.5034 -1.1968 20 6 2.1965 -1.1960 0.0059 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6558 2.1327 -0.0004 25 1 4.1166 2.1411 0.0001 26 1 5.3572 0.0157 0.0020 27 1 3.8037 -3.2430 0.0052 28 1 6.1844 -1.4625 0.0063 29 1 8.2878 -6.7827 0.0146 30 1 1.6564 -2.1313 0.0101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075599958.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:37 Heat of formation + Delta-G solvation = 38.271009 kcal Electronic energy + Delta-G solvation = -14215.889375 eV Core-core repulsion = 11782.029638 eV Total energy + Delta-G solvation = -2433.859737 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.49818 -38.25327 -36.54158 -35.24525 -33.21244 -32.45820 -29.96849 -27.64148 -26.47352 -23.70181 -23.06060 -21.44849 -19.82965 -18.44641 -17.39182 -16.84427 -16.52517 -15.52736 -14.98728 -14.87381 -14.82718 -14.36334 -14.21321 -13.84494 -13.57148 -13.32530 -13.01237 -12.91680 -12.91198 -12.58570 -12.14372 -12.11804 -12.03094 -11.75806 -11.63209 -11.23716 -9.79498 -9.48828 -8.57636 -8.39064 -5.92778 0.47304 0.63322 1.25865 1.45235 1.61117 1.61412 2.23598 2.55122 2.75343 2.80364 3.08407 3.65190 3.91896 4.06907 4.16821 4.39890 4.63549 4.68969 4.75861 4.90088 4.90984 5.06766 5.23396 5.28409 5.33402 5.50542 5.72613 5.77529 5.88350 6.18545 6.28781 6.59828 6.79813 7.00490 7.10311 7.39837 8.40118 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.045514 B = 0.005530 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.050477 B = 5061.741322 C = 5661.645010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.049 4.049 3 C -0.192 4.192 4 C -0.070 4.070 5 C -0.214 4.214 6 C 0.187 3.813 7 N -0.650 5.650 8 C -0.057 4.057 9 C 0.016 3.984 10 C 0.310 3.690 11 N -0.529 5.529 12 C -0.446 4.446 13 H 0.107 0.893 14 C 0.007 3.993 15 N -0.867 5.867 16 Si 0.997 3.003 17 H -0.241 1.241 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.220 4.220 21 H 0.078 0.922 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.141 0.859 25 H 0.145 0.855 26 H 0.127 0.873 27 H 0.388 0.612 28 H 0.159 0.841 29 H 0.281 0.719 30 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 13.815 -0.023 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.050 4.050 3 C -0.212 4.212 4 C -0.089 4.089 5 C -0.236 4.236 6 C 0.083 3.917 7 N -0.263 5.263 8 C -0.180 4.180 9 C 0.006 3.994 10 C -0.001 4.001 11 N -0.210 5.210 12 C -0.479 4.479 13 H 0.125 0.875 14 C -0.202 4.202 15 N -0.498 5.498 16 Si 0.818 3.182 17 H -0.164 1.164 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.243 4.243 21 H 0.097 0.903 22 H 0.083 0.917 23 H 0.101 0.899 24 H 0.158 0.842 25 H 0.163 0.837 26 H 0.144 0.856 27 H 0.221 0.779 28 H 0.176 0.824 29 H 0.092 0.908 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.873 12.098 -0.034 13.914 hybrid contribution 1.002 -0.912 -0.001 1.355 sum -5.872 11.186 -0.035 12.634 Atomic orbital electron populations 1.20827 0.89506 1.03409 1.02986 1.19939 0.97046 0.92158 0.95833 1.21070 0.94212 0.97772 1.08154 1.21181 0.94517 0.97413 0.95767 1.20919 1.00363 0.91264 1.11082 1.18198 0.91715 0.86224 0.95566 1.41248 1.05053 1.05734 1.74231 1.21090 0.81923 0.96534 1.18455 1.15814 0.93086 0.83399 1.07132 1.26271 0.89321 0.92874 0.91619 1.80736 1.16928 1.11141 1.12244 1.19489 0.89691 0.94611 1.44121 0.87513 1.26906 1.06638 0.94483 0.92179 1.69707 1.39547 0.99390 1.41107 0.84891 0.75301 0.80123 0.77852 1.16395 1.20287 1.20295 1.20603 0.91652 0.98942 1.13059 0.90340 0.91675 0.89870 0.84161 0.83734 0.85555 0.77869 0.82417 0.90809 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 10.01 71.24 0.71 -1.32 16 2 C -0.05 -1.26 5.88 -19.89 -0.12 -1.37 16 3 C -0.19 -4.54 9.70 22.30 0.22 -4.32 16 4 C -0.07 -1.77 10.04 22.25 0.22 -1.54 16 5 C -0.21 -6.62 9.30 22.41 0.21 -6.41 16 6 C 0.19 6.47 6.62 38.28 0.25 6.72 16 7 N -0.65 -25.54 5.36 -184.68 -0.99 -26.53 16 8 C -0.06 -2.39 9.89 84.26 0.83 -1.56 16 9 C 0.02 0.77 5.75 -21.19 -0.12 0.65 16 10 C 0.31 16.70 11.07 88.33 0.98 17.67 16 11 N -0.53 -29.54 18.18 19.00 0.35 -29.19 16 12 C -0.45 -21.88 9.10 23.27 0.21 -21.67 16 13 H 0.11 4.70 7.84 -2.91 -0.02 4.68 16 14 C 0.01 0.35 5.48 85.15 0.47 0.82 16 15 N -0.87 -47.53 10.49 21.79 0.23 -47.30 16 16 Si 1.00 37.89 29.56 68.60 2.03 39.91 16 17 H -0.24 -8.34 7.11 99.48 0.71 -7.64 16 18 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.28 -10.51 7.11 99.48 0.71 -9.81 16 20 C -0.22 -6.83 9.55 22.41 0.21 -6.61 16 21 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 23 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 24 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 25 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 26 H 0.13 3.79 5.96 -2.91 -0.02 3.77 16 27 H 0.39 15.86 7.42 -92.71 -0.69 15.17 16 28 H 0.16 5.93 5.90 -2.91 -0.02 5.91 16 29 H 0.28 14.57 8.30 -92.71 -0.77 13.80 16 30 H 0.11 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -60.02 271.20 6.17 -53.85 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.48 Total: 28.22 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 4.08 Total: -18.95 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -0.42 Total: -103.03 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.91 kcal Total: -60.02 6.17 -53.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599958.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.120 kcal (2) G-P(sol) polarization free energy of solvation -60.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds