Wall clock time and date at job start Mon Mar 30 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39279 * 126.42457 * 2 1 4 4 C 1.41538 * 126.55395 * 0.03879 * 3 2 1 5 5 H 1.08006 * 120.00019 * 0.02562 * 4 3 2 6 6 C 1.39715 * 119.99756 * 180.02562 * 4 3 2 7 7 N 1.31010 * 120.00072 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99724 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47024 * 89.99817 * 8 6 4 10 10 H 1.48499 * 109.47122 * 209.99406 * 8 6 4 11 11 H 1.48498 * 109.47021 * 330.00092 * 8 6 4 12 12 C 1.41977 * 106.88873 * 180.02562 * 3 2 1 13 13 N 1.30326 * 108.07731 * 359.97438 * 12 3 2 14 14 N 1.34745 * 126.41729 * 180.02562 * 2 1 3 15 15 C 1.40056 * 125.68920 * 359.71984 * 14 2 1 16 16 C 1.38879 * 120.06931 * 324.71956 * 15 14 2 17 17 C 1.38108 * 119.92979 * 179.77124 * 16 15 14 18 18 C 1.38289 * 120.07131 * 0.50973 * 17 16 15 19 19 C 1.38292 * 120.13764 * 359.74027 * 18 17 16 20 20 C 1.38104 * 120.07401 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.47352 * 269.97936 * 1 2 3 22 22 H 1.09001 * 109.46952 * 29.97976 * 1 2 3 23 23 H 1.09003 * 109.46917 * 149.97357 * 1 2 3 24 24 H 0.97007 * 119.99816 * 180.02562 * 7 6 4 25 25 H 1.07994 * 125.96202 * 179.97438 * 12 3 2 26 26 H 1.07999 * 120.03749 * 0.02751 * 16 15 14 27 27 H 1.08000 * 119.96778 * 180.25625 * 17 16 15 28 28 H 1.07994 * 119.93243 * 179.77162 * 18 17 16 29 29 H 1.08004 * 119.96285 * 180.02562 * 19 18 17 30 30 H 1.07993 * 120.03852 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3340 1.1207 0.0000 4 6 1.9197 2.4741 0.0008 5 1 0.8672 2.7166 0.0019 6 6 2.8722 3.4962 0.0001 7 7 4.1488 3.2019 -0.0007 8 14 2.3253 5.2824 0.0004 9 1 2.1813 5.7558 1.4006 10 1 3.3394 6.1107 -0.7002 11 1 1.0206 5.4008 -0.6988 12 6 3.6720 0.6459 -0.0006 13 7 3.6389 -0.6569 -0.0004 14 7 2.3069 -1.0843 -0.0005 15 6 1.8766 -2.4171 0.0045 16 6 0.7319 -2.7761 0.7041 17 6 0.3075 -4.0904 0.7031 18 6 1.0270 -5.0504 0.0152 19 6 2.1702 -4.6970 -0.6781 20 6 2.5972 -3.3836 -0.6851 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5143 24 1 4.8101 3.9116 -0.0008 25 1 4.5620 1.2576 -0.0012 26 1 0.1718 -2.0277 1.2449 27 1 -0.5849 -4.3695 1.2435 28 1 0.6952 -6.0781 0.0191 29 1 2.7298 -5.4490 -1.2147 30 1 3.4898 -3.1083 -1.2270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082660269.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:04 Heat of formation + Delta-G solvation = 92.228709 kcal Electronic energy + Delta-G solvation = -14889.237700 eV Core-core repulsion = 12457.717745 eV Total energy + Delta-G solvation = -2431.519956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.01590 -38.19440 -33.83392 -32.27372 -31.21118 -30.26698 -28.24503 -26.77472 -24.25990 -22.35717 -22.10528 -19.59050 -18.96379 -16.99729 -16.26809 -15.41231 -14.90043 -14.68891 -13.98409 -13.68697 -13.19202 -12.99760 -12.60606 -12.25538 -12.11483 -11.77533 -11.36071 -11.24907 -11.16992 -10.89541 -10.64904 -10.43631 -10.07244 -9.55141 -9.07096 -8.85865 -8.64572 -7.61814 -7.14313 -6.61001 -4.11333 1.55063 1.70157 2.96974 3.13031 3.16798 3.30637 3.74067 4.01887 4.18669 4.26656 5.21090 5.21362 5.41120 5.42385 5.74120 5.82807 5.90498 6.11506 6.25235 6.27074 6.43787 6.54786 6.68837 6.74553 6.81573 6.94649 7.15334 7.23741 7.47996 7.49903 7.97059 8.44482 8.55630 8.88854 8.99594 9.29437 10.38077 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.057304 B = 0.006559 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.508223 B = 4267.836000 C = 4668.143076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.117 4.117 3 C -0.003 4.003 4 C -0.428 4.428 5 H 0.074 0.926 6 C 0.067 3.933 7 N -0.836 5.836 8 Si 0.919 3.081 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.265 1.265 12 C 0.053 3.947 13 N -0.331 5.331 14 N -0.343 5.343 15 C 0.204 3.796 16 C -0.154 4.154 17 C -0.098 4.098 18 C -0.159 4.159 19 C -0.099 4.099 20 C -0.140 4.140 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.044 0.956 24 H 0.278 0.722 25 H 0.209 0.791 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.974 -7.855 -0.044 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.234 4.234 3 C -0.011 4.011 4 C -0.461 4.461 5 H 0.092 0.908 6 C -0.145 4.145 7 N -0.466 5.466 8 Si 0.745 3.255 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.189 1.189 12 C -0.136 4.136 13 N -0.149 5.149 14 N -0.122 5.122 15 C 0.107 3.893 16 C -0.176 4.176 17 C -0.117 4.117 18 C -0.178 4.178 19 C -0.118 4.118 20 C -0.161 4.161 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.089 0.911 25 H 0.225 0.775 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.091 -8.716 -0.056 9.629 hybrid contribution -0.591 1.619 0.025 1.723 sum -4.682 -7.097 -0.031 8.503 Atomic orbital electron populations 1.19910 0.89651 1.01032 1.00035 1.20746 0.92749 0.86269 1.23660 1.18053 0.90167 0.92628 1.00296 1.18818 0.93901 0.88828 1.44581 0.90768 1.25739 0.94409 1.01441 0.92888 1.69410 1.01264 1.34548 1.41406 0.86128 0.79164 0.81328 0.78896 1.19757 1.20432 1.18936 1.25389 1.00722 0.89499 0.97953 1.76752 0.96011 1.15615 1.26508 1.44775 1.04497 1.01818 1.61159 1.17494 0.94125 0.82461 0.95174 1.21107 0.98426 0.96912 1.01133 1.20872 0.99399 0.92296 0.99089 1.20958 0.96863 0.99082 1.00932 1.20921 0.96521 0.95328 0.99031 1.20977 1.01582 0.92698 1.00825 0.93498 0.91552 0.93659 0.91141 0.77472 0.85427 0.86128 0.86537 0.86203 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.96 8.39 36.01 0.30 -0.66 16 2 C -0.12 -2.90 6.88 -80.93 -0.56 -3.45 16 3 C 0.00 -0.07 5.93 -106.82 -0.63 -0.71 16 4 C -0.43 -11.35 9.13 -37.77 -0.34 -11.69 16 5 H 0.07 1.88 7.34 -52.48 -0.39 1.49 16 6 C 0.07 1.69 5.49 -17.35 -0.10 1.59 16 7 N -0.84 -21.40 10.32 55.54 0.57 -20.83 16 8 Si 0.92 18.98 29.56 -169.99 -5.02 13.96 16 9 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 10 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 12 C 0.05 1.44 10.92 -16.76 -0.18 1.25 16 13 N -0.33 -8.64 12.22 30.99 0.38 -8.26 16 14 N -0.34 -8.34 3.70 -6.19 -0.02 -8.36 16 15 C 0.20 4.22 6.25 -83.62 -0.52 3.69 16 16 C -0.15 -2.73 8.26 -39.39 -0.33 -3.05 16 17 C -0.10 -1.40 10.04 -39.61 -0.40 -1.80 16 18 C -0.16 -2.15 10.04 -39.54 -0.40 -2.55 16 19 C -0.10 -1.47 10.04 -39.61 -0.40 -1.86 16 20 C -0.14 -2.58 9.75 -39.39 -0.38 -2.96 16 21 H 0.05 0.86 7.72 -51.93 -0.40 0.46 16 22 H 0.07 1.30 7.59 -51.93 -0.39 0.91 16 23 H 0.04 0.83 6.90 -51.93 -0.36 0.47 16 24 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 25 H 0.21 5.59 5.77 -52.49 -0.30 5.28 16 26 H 0.13 2.22 6.09 -52.49 -0.32 1.90 16 27 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 30 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 260.18 15.07 3.92 3.92 Total: -1.00 -28.72 260.18 -7.10 -35.82 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -2.99 Total: 5.96 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -3.94 Total: -22.20 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.93 Total: -37.45 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.72 -7.10 -35.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082660269.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.047 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds