Wall clock time and date at job start Mon Mar 30 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39279 * 126.42457 * 2 1 4 4 C 1.41538 * 126.55395 * 0.03879 * 3 2 1 5 5 H 1.08006 * 120.00019 * 0.02562 * 4 3 2 6 6 C 1.39715 * 119.99756 * 180.02562 * 4 3 2 7 7 N 1.31010 * 120.00072 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99724 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47024 * 89.99817 * 8 6 4 10 10 H 1.48499 * 109.47122 * 209.99406 * 8 6 4 11 11 H 1.48498 * 109.47021 * 330.00092 * 8 6 4 12 12 C 1.41977 * 106.88873 * 180.02562 * 3 2 1 13 13 N 1.30326 * 108.07731 * 359.97438 * 12 3 2 14 14 N 1.34745 * 126.41729 * 180.02562 * 2 1 3 15 15 C 1.40056 * 125.68920 * 359.71984 * 14 2 1 16 16 C 1.38879 * 120.06931 * 324.71956 * 15 14 2 17 17 C 1.38108 * 119.92979 * 179.77124 * 16 15 14 18 18 C 1.38289 * 120.07131 * 0.50973 * 17 16 15 19 19 C 1.38292 * 120.13764 * 359.74027 * 18 17 16 20 20 C 1.38104 * 120.07401 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.47352 * 269.97936 * 1 2 3 22 22 H 1.09001 * 109.46952 * 29.97976 * 1 2 3 23 23 H 1.09003 * 109.46917 * 149.97357 * 1 2 3 24 24 H 0.97007 * 119.99816 * 180.02562 * 7 6 4 25 25 H 1.07994 * 125.96202 * 179.97438 * 12 3 2 26 26 H 1.07999 * 120.03749 * 0.02751 * 16 15 14 27 27 H 1.08000 * 119.96778 * 180.25625 * 17 16 15 28 28 H 1.07994 * 119.93243 * 179.77162 * 18 17 16 29 29 H 1.08004 * 119.96285 * 180.02562 * 19 18 17 30 30 H 1.07993 * 120.03852 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3340 1.1207 0.0000 4 6 1.9197 2.4741 0.0008 5 1 0.8672 2.7166 0.0019 6 6 2.8722 3.4962 0.0001 7 7 4.1488 3.2019 -0.0007 8 14 2.3253 5.2824 0.0004 9 1 2.1813 5.7558 1.4006 10 1 3.3394 6.1107 -0.7002 11 1 1.0206 5.4008 -0.6988 12 6 3.6720 0.6459 -0.0006 13 7 3.6389 -0.6569 -0.0004 14 7 2.3069 -1.0843 -0.0005 15 6 1.8766 -2.4171 0.0045 16 6 0.7319 -2.7761 0.7041 17 6 0.3075 -4.0904 0.7031 18 6 1.0270 -5.0504 0.0152 19 6 2.1702 -4.6970 -0.6781 20 6 2.5972 -3.3836 -0.6851 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5143 24 1 4.8101 3.9116 -0.0008 25 1 4.5620 1.2576 -0.0012 26 1 0.1718 -2.0277 1.2449 27 1 -0.5849 -4.3695 1.2435 28 1 0.6952 -6.0781 0.0191 29 1 2.7298 -5.4490 -1.2147 30 1 3.4898 -3.1083 -1.2270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082660269.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:04 Heat of formation + Delta-G solvation = 76.285153 kcal Electronic energy + Delta-G solvation = -14889.929065 eV Core-core repulsion = 12457.717745 eV Total energy + Delta-G solvation = -2432.211320 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.78201 -39.62248 -35.64342 -33.94106 -32.85074 -31.67956 -29.87874 -28.51805 -26.11067 -23.81204 -23.51157 -21.42272 -20.60883 -18.86926 -17.70780 -16.89169 -16.68517 -16.22434 -15.50086 -15.23163 -14.66200 -14.58294 -14.22950 -13.89637 -13.63964 -13.35476 -12.98891 -12.89211 -12.75541 -12.42653 -12.27532 -12.00279 -11.74169 -11.30575 -10.96971 -10.53091 -9.91177 -9.43418 -8.91052 -8.44186 -6.06539 0.14298 0.43117 1.31122 1.44501 1.56818 1.58628 2.05758 2.29125 2.30780 2.87904 3.46473 3.93522 4.04942 4.26207 4.31558 4.43009 4.49306 4.53649 4.73346 4.81641 4.85750 5.10618 5.16019 5.20216 5.44538 5.48072 5.57099 5.60464 5.67666 5.99732 6.01305 6.49658 6.75359 7.02072 7.08021 7.36857 8.56961 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.057304 B = 0.006559 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.508223 B = 4267.836000 C = 4668.143076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.105 4.105 3 C -0.050 4.050 4 C -0.462 4.462 5 H 0.077 0.923 6 C 0.021 3.979 7 N -0.867 5.867 8 Si 0.993 3.007 9 H -0.267 1.267 10 H -0.273 1.273 11 H -0.259 1.259 12 C 0.019 3.981 13 N -0.352 5.352 14 N -0.341 5.341 15 C 0.147 3.853 16 C -0.157 4.157 17 C -0.090 4.090 18 C -0.134 4.134 19 C -0.095 4.095 20 C -0.155 4.155 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.282 0.718 25 H 0.197 0.803 26 H 0.127 0.873 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.154 0.846 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 -10.259 0.220 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.225 4.225 3 C -0.059 4.059 4 C -0.495 4.495 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.498 5.498 8 Si 0.815 3.185 9 H -0.192 1.192 10 H -0.198 1.198 11 H -0.183 1.183 12 C -0.167 4.167 13 N -0.172 5.172 14 N -0.121 5.121 15 C 0.054 3.946 16 C -0.178 4.178 17 C -0.108 4.108 18 C -0.152 4.152 19 C -0.113 4.113 20 C -0.176 4.176 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.213 0.787 26 H 0.145 0.855 27 H 0.180 0.820 28 H 0.182 0.818 29 H 0.171 0.829 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.639 -11.181 0.208 13.005 hybrid contribution 0.083 1.920 -0.053 1.923 sum -6.556 -9.261 0.154 11.348 Atomic orbital electron populations 1.20004 0.86423 1.02082 1.01615 1.21533 0.94835 0.86008 1.20105 1.18477 0.90698 0.93963 1.02745 1.19040 0.94372 0.89356 1.46756 0.90492 1.26629 0.94268 1.05631 0.92180 1.69510 1.02263 1.35867 1.42185 0.85026 0.78821 0.75676 0.79002 1.19190 1.19795 1.18335 1.25199 1.00830 0.89911 1.00775 1.76608 0.97770 1.15239 1.27605 1.45083 1.03674 1.03448 1.59942 1.18058 0.96650 0.81224 0.98666 1.21286 0.97141 0.98768 1.00639 1.21373 1.00422 0.90613 0.98421 1.21565 0.94928 1.01104 0.97638 1.21331 0.97165 0.94057 0.98785 1.21066 1.01081 0.94281 1.01126 0.91438 0.91341 0.91623 0.90725 0.78674 0.85513 0.82009 0.81838 0.82854 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.69 8.39 71.24 0.60 -1.09 16 2 C -0.10 -5.30 6.88 42.36 0.29 -5.01 16 3 C -0.05 -2.84 5.93 -21.29 -0.13 -2.96 16 4 C -0.46 -25.53 9.13 23.44 0.21 -25.31 16 5 H 0.08 4.01 7.34 -2.91 -0.02 3.99 16 6 C 0.02 1.10 5.49 85.17 0.47 1.56 16 7 N -0.87 -46.83 10.32 21.79 0.22 -46.60 16 8 Si 0.99 39.82 29.56 68.60 2.03 41.84 16 9 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 10 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 11 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 12 C 0.02 1.11 10.92 85.84 0.94 2.05 16 13 N -0.35 -19.45 12.22 -55.87 -0.68 -20.13 16 14 N -0.34 -17.06 3.70 -173.50 -0.64 -17.70 16 15 C 0.15 6.02 6.25 38.13 0.24 6.26 16 16 C -0.16 -5.16 8.26 22.39 0.19 -4.97 16 17 C -0.09 -2.11 10.04 22.25 0.22 -1.89 16 18 C -0.13 -2.82 10.04 22.29 0.22 -2.59 16 19 C -0.10 -2.43 10.04 22.25 0.22 -2.21 16 20 C -0.15 -5.59 9.75 22.39 0.22 -5.37 16 21 H 0.07 2.38 7.72 -2.39 -0.02 2.36 16 22 H 0.07 2.65 7.59 -2.39 -0.02 2.63 16 23 H 0.06 2.28 6.90 -2.39 -0.02 2.26 16 24 H 0.28 13.90 8.30 -92.70 -0.77 13.13 16 25 H 0.20 11.50 5.77 -2.91 -0.02 11.48 16 26 H 0.13 4.11 6.09 -2.91 -0.02 4.10 16 27 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 28 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 30 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -67.22 260.18 5.77 -61.45 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 1.15 Total: 22.68 kcal Atomic # 6 Polarization: -45.23 SS G_CDS: 3.69 Total: -41.54 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -1.10 Total: -84.44 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.84 kcal Total: -67.22 5.77 -61.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082660269.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.739 kcal (2) G-P(sol) polarization free energy of solvation -67.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds