Wall clock time and date at job start Mon Mar 30 2020 02:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31332 * 1 3 3 Si 1.86797 * 120.00043 * 2 1 4 4 H 1.48497 * 109.47217 * 268.93904 * 3 2 1 5 5 H 1.48498 * 109.47525 * 28.93776 * 3 2 1 6 6 H 1.48504 * 109.47109 * 148.93829 * 3 2 1 7 7 C 1.38937 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99774 * 190.16461 * 7 2 1 9 9 N 1.37565 * 119.99998 * 10.16713 * 7 2 1 10 10 C 1.37291 * 126.51151 * 18.34506 * 9 7 2 11 11 C 1.34638 * 106.82850 * 179.97438 * 10 9 7 12 12 N 1.34239 * 108.28062 * 359.77602 * 11 10 9 13 13 C 1.30483 * 109.40551 * 0.37022 * 12 11 10 14 14 C 1.50702 * 125.75108 * 179.89086 * 13 12 11 15 15 C 1.50699 * 109.47214 * 269.70176 * 14 13 12 16 16 C 1.38230 * 120.00500 * 89.99630 * 15 14 13 17 17 C 1.38235 * 120.00232 * 180.02562 * 16 15 14 18 18 C 1.38235 * 119.99731 * 359.97438 * 17 16 15 19 19 C 1.38231 * 119.99907 * 0.26046 * 18 17 16 20 20 C 1.38230 * 120.00294 * 359.46205 * 19 18 17 21 21 H 0.97003 * 119.99630 * 0.02562 * 1 2 3 22 22 H 1.08000 * 126.58433 * 0.02562 * 10 9 7 23 23 H 1.08005 * 125.85351 * 179.97438 * 11 10 9 24 24 H 1.08995 * 109.47448 * 149.69181 * 14 13 12 25 25 H 1.09004 * 109.46238 * 29.69491 * 14 13 12 26 26 H 1.08001 * 119.99910 * 359.97438 * 16 15 14 27 27 H 1.08001 * 119.99829 * 179.97438 * 17 16 15 28 28 H 1.08001 * 119.99622 * 179.97438 * 18 17 16 29 29 H 1.08003 * 119.99928 * 179.72365 * 19 18 17 30 30 H 1.08008 * 120.00507 * 180.27788 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.5173 2.0334 -1.3998 5 1 1.4338 2.6591 0.6774 6 1 3.5335 1.4467 0.7224 7 6 2.0080 -1.2033 0.0005 8 1 3.0752 -1.2105 0.1656 9 7 1.3363 -2.3853 -0.2092 10 6 0.0906 -2.5289 -0.7683 11 6 -0.1801 -3.8477 -0.7836 12 7 0.8680 -4.4989 -0.2549 13 6 1.7813 -3.6362 0.0978 14 6 3.1075 -3.9678 0.7321 15 6 2.9600 -3.9718 2.2319 16 6 2.6157 -5.1380 2.8895 17 6 2.4799 -5.1415 4.2651 18 6 2.6889 -3.9789 4.9832 19 6 3.0284 -2.8117 4.3252 20 6 3.1699 -2.8095 2.9501 21 1 -0.4850 0.8401 -0.0004 22 1 -0.5489 -1.7363 -1.1277 23 1 -1.0840 -4.3036 -1.1598 24 1 3.8461 -3.2208 0.4416 25 1 3.4346 -4.9519 0.3966 26 1 2.4520 -6.0461 2.3284 27 1 2.2105 -6.0525 4.7788 28 1 2.5824 -3.9816 6.0580 29 1 3.1874 -1.9024 4.8858 30 1 3.4396 -1.8985 2.4363 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082738888.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:13 Heat of formation + Delta-G solvation = 71.103966 kcal Electronic energy + Delta-G solvation = -15127.713771 eV Core-core repulsion = 12695.277777 eV Total energy + Delta-G solvation = -2432.435993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37359 -38.58326 -33.93454 -32.76528 -30.81203 -30.36605 -28.42272 -25.67832 -24.85909 -22.07655 -21.05866 -20.18523 -18.88687 -17.41189 -16.28243 -15.51717 -14.74526 -14.61794 -14.39746 -13.64520 -13.02466 -12.91122 -12.66792 -12.39771 -12.19142 -11.85541 -11.53806 -11.34613 -11.22665 -10.83710 -10.63719 -10.59822 -10.40470 -9.65291 -8.46344 -8.41972 -8.29388 -8.20449 -6.91634 -6.65621 -4.48405 1.84973 1.90709 2.90722 3.00165 3.03580 3.69235 3.82246 4.27536 4.58313 4.88830 5.05156 5.34820 5.36615 5.48191 5.67464 5.77521 6.01166 6.01708 6.21176 6.37131 6.48456 6.56194 6.81261 6.92146 6.93491 6.97401 7.08604 7.22071 7.42223 7.50689 7.56833 8.25502 8.39037 8.78112 9.45714 9.74756 10.26060 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.022684 B = 0.010514 C = 0.008029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.068799 B = 2662.564841 C = 3486.376635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.048 3.952 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.343 4.343 8 H 0.107 0.893 9 N -0.259 5.259 10 C -0.039 4.039 11 C -0.098 4.098 12 N -0.512 5.512 13 C 0.107 3.893 14 C 0.026 3.974 15 C -0.061 4.061 16 C -0.107 4.107 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.125 4.125 20 C -0.102 4.102 21 H 0.279 0.721 22 H 0.169 0.831 23 H 0.141 0.859 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.459 -1.869 5.191 7.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.162 4.162 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.472 4.472 8 H 0.125 0.875 9 N 0.075 4.925 10 C -0.183 4.183 11 C -0.250 4.250 12 N -0.233 5.233 13 C -0.150 4.150 14 C -0.013 4.013 15 C -0.062 4.062 16 C -0.125 4.125 17 C -0.146 4.146 18 C -0.152 4.152 19 C -0.143 4.143 20 C -0.121 4.121 21 H 0.090 0.910 22 H 0.186 0.814 23 H 0.159 0.841 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.139 0.861 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.477 -2.426 5.338 8.023 hybrid contribution -0.103 1.856 -0.051 1.859 sum 5.374 -0.571 5.287 7.560 Atomic orbital electron populations 1.69906 1.06425 1.28778 1.41773 1.25514 0.95629 1.00561 0.94515 0.85802 0.79417 0.79760 0.79086 1.19526 1.20217 1.18781 1.19824 0.93676 0.82133 1.51576 0.87496 1.41467 1.12111 1.05370 1.33559 1.22697 0.90592 0.97707 1.07257 1.21684 0.99328 0.91360 1.12611 1.69752 1.01771 1.33135 1.18664 1.22290 0.99187 0.81608 1.11899 1.18522 0.91465 1.01990 0.89295 1.19895 0.97556 0.93310 0.95408 1.21038 0.99159 0.98184 0.94104 1.21024 1.01365 0.97927 0.94308 1.21002 1.01634 0.93333 0.99220 1.21059 1.00873 0.97729 0.94685 1.21166 0.99195 0.97873 0.93819 0.91047 0.81390 0.84128 0.90593 0.89990 0.86136 0.86738 0.86923 0.86696 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.80 10.88 55.49 0.60 -21.19 16 2 C 0.05 1.20 5.38 -17.51 -0.09 1.10 16 3 Si 0.93 18.67 29.56 -169.99 -5.03 13.64 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.34 -8.75 9.82 -14.72 -0.14 -8.89 16 8 H 0.11 2.53 7.10 -52.49 -0.37 2.16 16 9 N -0.26 -6.91 2.92 -58.87 -0.17 -7.08 16 10 C -0.04 -1.06 10.18 -16.38 -0.17 -1.22 16 11 C -0.10 -2.49 11.85 -17.77 -0.21 -2.70 16 12 N -0.51 -13.27 11.24 -10.52 -0.12 -13.39 16 13 C 0.11 2.67 7.14 -154.29 -1.10 1.57 16 14 C 0.03 0.53 5.64 -29.03 -0.16 0.37 16 15 C -0.06 -1.18 5.12 -104.62 -0.54 -1.71 16 16 C -0.11 -1.90 9.70 -39.59 -0.38 -2.29 16 17 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 18 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 19 C -0.13 -2.09 10.05 -39.59 -0.40 -2.48 16 20 C -0.10 -1.93 9.70 -39.58 -0.38 -2.31 16 21 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 22 H 0.17 4.51 6.42 -52.49 -0.34 4.17 16 23 H 0.14 3.14 8.06 -52.48 -0.42 2.72 16 24 H 0.08 1.45 7.25 -51.93 -0.38 1.07 16 25 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 26 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 27 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 266.12 15.07 4.01 4.01 Total: -1.00 -29.53 266.12 -8.26 -37.79 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -3.18 Total: 9.68 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -4.38 Total: -23.46 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.31 Total: -41.66 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.53 -8.26 -37.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738888.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.891 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds