Wall clock time and date at job start Mon Mar 30 2020 02:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31332 * 1 3 3 Si 1.86797 * 120.00043 * 2 1 4 4 H 1.48497 * 109.47217 * 268.93904 * 3 2 1 5 5 H 1.48498 * 109.47525 * 28.93776 * 3 2 1 6 6 H 1.48504 * 109.47109 * 148.93829 * 3 2 1 7 7 C 1.38937 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99774 * 190.16461 * 7 2 1 9 9 N 1.37565 * 119.99998 * 10.16713 * 7 2 1 10 10 C 1.37291 * 126.51151 * 18.34506 * 9 7 2 11 11 C 1.34638 * 106.82850 * 179.97438 * 10 9 7 12 12 N 1.34239 * 108.28062 * 359.77602 * 11 10 9 13 13 C 1.30483 * 109.40551 * 0.37022 * 12 11 10 14 14 C 1.50702 * 125.75108 * 179.89086 * 13 12 11 15 15 C 1.50699 * 109.47214 * 269.70176 * 14 13 12 16 16 C 1.38230 * 120.00500 * 89.99630 * 15 14 13 17 17 C 1.38235 * 120.00232 * 180.02562 * 16 15 14 18 18 C 1.38235 * 119.99731 * 359.97438 * 17 16 15 19 19 C 1.38231 * 119.99907 * 0.26046 * 18 17 16 20 20 C 1.38230 * 120.00294 * 359.46205 * 19 18 17 21 21 H 0.97003 * 119.99630 * 0.02562 * 1 2 3 22 22 H 1.08000 * 126.58433 * 0.02562 * 10 9 7 23 23 H 1.08005 * 125.85351 * 179.97438 * 11 10 9 24 24 H 1.08995 * 109.47448 * 149.69181 * 14 13 12 25 25 H 1.09004 * 109.46238 * 29.69491 * 14 13 12 26 26 H 1.08001 * 119.99910 * 359.97438 * 16 15 14 27 27 H 1.08001 * 119.99829 * 179.97438 * 17 16 15 28 28 H 1.08001 * 119.99622 * 179.97438 * 18 17 16 29 29 H 1.08003 * 119.99928 * 179.72365 * 19 18 17 30 30 H 1.08008 * 120.00507 * 180.27788 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.5173 2.0334 -1.3998 5 1 1.4338 2.6591 0.6774 6 1 3.5335 1.4467 0.7224 7 6 2.0080 -1.2033 0.0005 8 1 3.0752 -1.2105 0.1656 9 7 1.3363 -2.3853 -0.2092 10 6 0.0906 -2.5289 -0.7683 11 6 -0.1801 -3.8477 -0.7836 12 7 0.8680 -4.4989 -0.2549 13 6 1.7813 -3.6362 0.0978 14 6 3.1075 -3.9678 0.7321 15 6 2.9600 -3.9718 2.2319 16 6 2.6157 -5.1380 2.8895 17 6 2.4799 -5.1415 4.2651 18 6 2.6889 -3.9789 4.9832 19 6 3.0284 -2.8117 4.3252 20 6 3.1699 -2.8095 2.9501 21 1 -0.4850 0.8401 -0.0004 22 1 -0.5489 -1.7363 -1.1277 23 1 -1.0840 -4.3036 -1.1598 24 1 3.8461 -3.2208 0.4416 25 1 3.4346 -4.9519 0.3966 26 1 2.4520 -6.0461 2.3284 27 1 2.2105 -6.0525 4.7788 28 1 2.5824 -3.9816 6.0580 29 1 3.1874 -1.9024 4.8858 30 1 3.4396 -1.8985 2.4363 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082738888.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:13 Heat of formation + Delta-G solvation = 56.399317 kcal Electronic energy + Delta-G solvation = -15128.351412 eV Core-core repulsion = 12695.277777 eV Total energy + Delta-G solvation = -2433.073635 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.31338 -39.92384 -35.85749 -34.25817 -32.75919 -31.68058 -30.10365 -27.50319 -26.67963 -23.40101 -22.48959 -22.13059 -20.77428 -19.29738 -17.69090 -17.33895 -16.20498 -16.11564 -15.92530 -15.39696 -14.80430 -14.50737 -14.17397 -13.97560 -13.85582 -13.60969 -13.11188 -12.97460 -12.83710 -12.68283 -12.16394 -11.95153 -11.75702 -11.49367 -10.47061 -10.26861 -9.73176 -9.57101 -8.86414 -8.57805 -6.45766 0.51438 0.58925 1.28520 1.36750 1.51071 1.84044 2.12173 2.57209 2.91870 2.99881 3.20226 3.96652 4.06542 4.14167 4.23528 4.36347 4.48722 4.66675 4.80437 4.83623 4.92927 4.99259 5.12040 5.22398 5.25830 5.41336 5.60406 5.64507 5.67122 5.85247 6.20319 6.31521 6.42189 6.83982 7.50979 7.76440 8.39545 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.022684 B = 0.010514 C = 0.008029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.068799 B = 2662.564841 C = 3486.376635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.006 3.994 3 Si 1.008 2.992 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.367 4.367 8 H 0.119 0.881 9 N -0.274 5.274 10 C -0.069 4.069 11 C -0.104 4.104 12 N -0.530 5.530 13 C 0.104 3.896 14 C 0.029 3.971 15 C -0.084 4.084 16 C -0.121 4.121 17 C -0.127 4.127 18 C -0.129 4.129 19 C -0.132 4.132 20 C -0.124 4.124 21 H 0.284 0.716 22 H 0.160 0.840 23 H 0.165 0.835 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.137 0.863 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -1.578 6.811 9.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.202 4.202 3 Si 0.828 3.172 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.172 1.172 7 C -0.495 4.495 8 H 0.136 0.864 9 N 0.061 4.939 10 C -0.212 4.212 11 C -0.255 4.255 12 N -0.251 5.251 13 C -0.154 4.154 14 C -0.010 4.010 15 C -0.085 4.085 16 C -0.139 4.139 17 C -0.145 4.145 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.142 4.142 21 H 0.094 0.906 22 H 0.177 0.823 23 H 0.183 0.817 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.141 0.859 27 H 0.164 0.836 28 H 0.167 0.833 29 H 0.155 0.845 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.432 -2.153 6.953 9.714 hybrid contribution -0.428 1.710 -0.501 1.832 sum 6.004 -0.443 6.452 8.825 Atomic orbital electron populations 1.70008 1.08092 1.30006 1.42194 1.26575 0.96407 1.03906 0.93272 0.84722 0.78480 0.74701 0.79307 1.19035 1.19862 1.17220 1.20285 0.94424 0.82390 1.52389 0.86378 1.41751 1.12205 1.06281 1.33695 1.22755 0.91399 0.98079 1.08930 1.22118 1.00143 0.91122 1.12151 1.69784 1.02273 1.33536 1.19540 1.23179 1.00353 0.81084 1.10769 1.18632 0.89300 1.02812 0.90266 1.19872 0.99544 0.94383 0.94664 1.21219 0.99521 0.97802 0.95379 1.21422 1.00034 0.99492 0.93544 1.21445 0.99700 0.92448 1.01059 1.21388 1.00286 0.99371 0.93940 1.21230 1.00505 0.97355 0.95092 0.90588 0.82306 0.81738 0.90056 0.88577 0.85856 0.83617 0.83350 0.84501 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.93 10.88 21.65 0.24 -45.69 16 2 C 0.01 0.27 5.38 84.93 0.46 0.73 16 3 Si 1.01 37.63 29.56 68.60 2.03 39.66 16 4 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 7 C -0.37 -18.86 9.82 83.96 0.82 -18.03 16 8 H 0.12 5.61 7.10 -2.91 -0.02 5.59 16 9 N -0.27 -14.82 2.92 -340.17 -0.99 -15.82 16 10 C -0.07 -3.79 10.18 83.01 0.85 -2.95 16 11 C -0.10 -5.35 11.85 83.50 0.99 -4.36 16 12 N -0.53 -27.68 11.24 -187.19 -2.10 -29.78 16 13 C 0.10 5.22 7.14 137.74 0.98 6.21 16 14 C 0.03 1.17 5.64 29.10 0.16 1.33 16 15 C -0.08 -3.20 5.12 -19.87 -0.10 -3.31 16 16 C -0.12 -4.16 9.70 22.27 0.22 -3.94 16 17 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 18 C -0.13 -3.54 10.05 22.27 0.22 -3.31 16 19 C -0.13 -4.11 10.05 22.27 0.22 -3.88 16 20 C -0.12 -4.58 9.70 22.27 0.22 -4.36 16 21 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 22 H 0.16 8.86 6.42 -2.91 -0.02 8.84 16 23 H 0.17 7.37 8.06 -2.91 -0.02 7.35 16 24 H 0.08 3.12 7.25 -2.39 -0.02 3.10 16 25 H 0.10 3.52 8.09 -2.38 -0.02 3.50 16 26 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 27 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 28 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 29 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -63.32 266.12 5.56 -57.76 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 1.13 Total: 33.19 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 5.27 Total: -39.31 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -2.86 Total: -91.30 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -63.32 5.56 -57.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082738888.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.155 kcal (2) G-P(sol) polarization free energy of solvation -63.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds