Wall clock time and date at job start Mon Mar 30 2020 02:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37960 * 120.07455 * 2 1 4 4 C 1.38355 * 120.14866 * 179.97438 * 3 2 1 5 5 C 1.38400 * 120.30373 * 0.02562 * 4 3 2 6 6 C 1.37918 * 120.15266 * 359.76380 * 5 4 3 7 7 C 1.39620 * 120.07586 * 180.02562 * 2 1 3 8 8 C 1.47729 * 120.14946 * 359.97438 * 7 2 1 9 9 N 1.31505 * 125.89293 * 352.32166 * 8 7 2 10 10 C 1.33877 * 109.33922 * 179.97438 * 9 8 7 11 11 C 1.34882 * 108.53557 * 0.02562 * 10 9 8 12 12 N 1.37156 * 125.89123 * 172.27606 * 8 7 2 13 13 C 1.37311 * 126.56315 * 359.77450 * 12 8 7 14 14 H 1.08005 * 120.00028 * 315.73766 * 13 12 8 15 15 C 1.39006 * 119.99870 * 135.72996 * 13 12 8 16 16 N 1.31299 * 120.00092 * 182.63384 * 15 13 12 17 17 Si 1.86797 * 120.00189 * 2.63079 * 15 13 12 18 18 H 1.48500 * 109.47179 * 85.30464 * 17 15 13 19 19 H 1.48497 * 109.47570 * 205.30688 * 17 15 13 20 20 H 1.48502 * 109.47227 * 325.30532 * 17 15 13 21 21 H 1.09004 * 109.46899 * 269.97477 * 1 2 3 22 22 H 1.08999 * 109.47150 * 29.97322 * 1 2 3 23 23 H 1.08997 * 109.47235 * 149.97711 * 1 2 3 24 24 H 1.07994 * 119.92449 * 0.02960 * 3 2 1 25 25 H 1.08000 * 119.84678 * 180.02562 * 4 3 2 26 26 H 1.07999 * 119.92584 * 180.02562 * 5 4 3 27 27 H 1.07996 * 120.07899 * 180.25188 * 6 5 4 28 28 H 1.08000 * 125.73533 * 179.97438 * 10 9 8 29 29 H 1.08001 * 126.48737 * 180.02562 * 11 10 9 30 30 H 0.97000 * 120.00043 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5819 1.1957 0.0005 5 6 4.2818 0.0017 0.0005 6 6 3.6033 -1.1991 0.0049 7 6 2.2067 -1.2082 -0.0005 8 6 1.4731 -2.4905 -0.0005 9 7 0.1739 -2.6354 0.1423 10 6 -0.1353 -3.9370 0.0906 11 6 1.0010 -4.6408 -0.0899 12 7 2.0295 -3.7352 -0.1504 13 6 3.3605 -4.0198 -0.3312 14 1 3.9486 -3.4352 -1.0233 15 6 3.9512 -5.0602 0.3766 16 7 5.2352 -5.2995 0.2427 17 14 2.9182 -6.1178 1.5184 18 1 2.2791 -7.2087 0.7394 19 1 3.7864 -6.7041 2.5708 20 1 1.8677 -5.2815 2.1526 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3633 -0.8897 -0.5142 24 1 1.6584 2.1291 0.0005 25 1 4.1182 2.1331 0.0010 26 1 5.3618 0.0102 0.0014 27 1 4.1507 -2.1300 0.0090 28 1 -1.1278 -4.3535 0.1794 29 1 1.0852 -5.7144 -0.1727 30 1 5.6475 -6.0252 0.7369 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082739072.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:42 Heat of formation + Delta-G solvation = 70.192831 kcal Electronic energy + Delta-G solvation = -15340.450452 eV Core-core repulsion = 12907.974949 eV Total energy + Delta-G solvation = -2432.475503 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.69182 -39.79333 -36.03331 -33.90266 -33.31722 -32.43859 -29.20536 -27.79182 -27.01584 -23.97305 -22.80341 -21.95096 -20.78125 -19.75816 -18.10461 -16.90007 -16.39144 -16.10774 -15.95119 -15.45064 -14.94598 -14.44794 -14.39589 -14.16449 -13.98193 -13.82239 -13.22076 -13.03371 -12.79285 -12.69564 -12.16441 -11.93187 -11.81304 -11.21651 -10.52193 -10.45528 -10.22085 -9.52317 -8.84539 -8.59599 -6.73446 0.19158 0.59078 1.12780 1.21488 1.33165 1.55876 1.99729 2.36151 2.57754 2.66130 3.12209 3.66018 4.12614 4.17250 4.30215 4.37748 4.54147 4.63092 4.69005 4.91918 5.01576 5.02400 5.12252 5.20636 5.31515 5.52209 5.62388 5.64782 5.71417 5.93166 5.93628 6.15228 6.29349 6.59427 7.14721 7.40042 8.24087 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.028379 B = 0.011178 C = 0.008411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.416016 B = 2504.222409 C = 3328.010919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.075 4.075 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.136 4.136 6 C -0.139 4.139 7 C -0.026 4.026 8 C 0.162 3.838 9 N -0.497 5.497 10 C -0.052 4.052 11 C -0.119 4.119 12 N -0.290 5.290 13 C -0.367 4.367 14 H 0.101 0.899 15 C 0.045 3.955 16 N -0.870 5.870 17 Si 0.945 3.055 18 H -0.244 1.244 19 H -0.275 1.275 20 H -0.265 1.265 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.155 0.845 25 H 0.157 0.843 26 H 0.136 0.864 27 H 0.129 0.871 28 H 0.193 0.807 29 H 0.167 0.833 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.509 7.290 1.021 8.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.077 4.077 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.154 4.154 6 C -0.158 4.158 7 C -0.027 4.027 8 C -0.092 4.092 9 N -0.217 5.217 10 C -0.206 4.206 11 C -0.258 4.258 12 N 0.042 4.958 13 C -0.495 4.495 14 H 0.119 0.881 15 C -0.165 4.165 16 N -0.501 5.501 17 Si 0.768 3.232 18 H -0.168 1.168 19 H -0.201 1.201 20 H -0.190 1.190 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.173 0.827 25 H 0.175 0.825 26 H 0.154 0.846 27 H 0.147 0.853 28 H 0.209 0.791 29 H 0.184 0.816 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.657 7.754 1.137 9.116 hybrid contribution 0.710 -1.800 0.245 1.950 sum -3.947 5.954 1.382 7.276 Atomic orbital electron populations 1.20986 0.89688 1.03635 1.02428 1.20254 0.97529 0.91501 0.98402 1.21259 0.94549 0.97265 1.01311 1.21558 0.94307 0.98410 0.98889 1.21279 1.00639 0.91958 1.01533 1.22135 0.93841 1.00637 0.99212 1.17814 0.92447 0.88909 1.03567 1.21795 0.89399 0.86613 1.11406 1.70280 1.10469 1.18781 1.22202 1.22530 0.98762 0.89439 1.09836 1.22944 0.88847 0.97064 1.16913 1.41808 1.06372 1.05518 1.42080 1.19245 0.82728 1.19996 1.27517 0.88131 1.26044 0.96541 0.97129 0.96813 1.69616 1.10976 1.29793 1.39701 0.85747 0.78739 0.79483 0.79198 1.16764 1.20093 1.18985 0.91847 0.90592 0.89910 0.82709 0.82543 0.84630 0.85334 0.79055 0.81564 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.71 9.07 71.24 0.65 -3.07 16 2 C -0.07 -2.79 5.92 -19.60 -0.12 -2.91 16 3 C -0.13 -3.73 9.69 22.23 0.22 -3.51 16 4 C -0.11 -3.22 10.04 22.34 0.22 -2.99 16 5 C -0.14 -4.72 10.03 22.23 0.22 -4.50 16 6 C -0.14 -6.10 9.13 22.54 0.21 -5.90 16 7 C -0.03 -1.15 5.87 -20.09 -0.12 -1.27 16 8 C 0.16 8.00 7.49 136.24 1.02 9.02 16 9 N -0.50 -22.92 7.85 -188.89 -1.48 -24.40 16 10 C -0.05 -2.22 11.83 83.61 0.99 -1.23 16 11 C -0.12 -5.50 8.31 83.09 0.69 -4.81 16 12 N -0.29 -14.91 2.57 -341.99 -0.88 -15.79 16 13 C -0.37 -19.86 8.10 84.02 0.68 -19.18 16 14 H 0.10 5.83 6.58 -2.91 -0.02 5.81 16 15 C 0.04 2.35 5.50 84.96 0.47 2.81 16 16 N -0.87 -46.54 13.95 21.67 0.30 -46.24 16 17 Si 0.95 41.49 25.06 68.60 1.72 43.21 16 18 H -0.24 -9.73 6.93 99.48 0.69 -9.04 16 19 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.27 -12.32 6.56 99.48 0.65 -11.67 16 21 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 22 H 0.08 2.00 8.09 -2.39 -0.02 1.98 16 23 H 0.08 3.20 5.38 -2.39 -0.01 3.19 16 24 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 25 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 26 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 27 H 0.13 6.46 4.41 -2.91 -0.01 6.44 16 28 H 0.19 6.40 8.06 -2.91 -0.02 6.37 16 29 H 0.17 6.98 5.88 -2.91 -0.02 6.97 16 30 H 0.29 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -61.32 250.01 5.87 -55.44 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 1.08 Total: 25.31 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 5.13 Total: -37.53 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -2.06 Total: -86.44 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.72 Total: 43.21 kcal Total: -61.32 5.87 -55.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082739072.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.637 kcal (2) G-P(sol) polarization free energy of solvation -61.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds