Wall clock time and date at job start Mon Mar 30 2020 02:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00148 * 2 1 4 4 H 1.48507 * 109.47058 * 90.00469 * 3 2 1 5 5 H 1.48503 * 109.47134 * 210.00092 * 3 2 1 6 6 H 1.48494 * 109.47375 * 330.00419 * 3 2 1 7 7 C 1.37878 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99725 * 187.44134 * 7 2 1 9 9 C 1.50703 * 120.00330 * 7.43789 * 7 2 1 10 10 H 1.09007 * 109.46829 * 35.34837 * 9 7 2 11 11 N 1.46897 * 109.47104 * 275.35212 * 9 7 2 12 12 C 1.50689 * 109.47348 * 155.34595 * 9 7 2 13 13 C 1.36611 * 120.92570 * 99.72407 * 12 9 7 14 14 C 1.39288 * 119.93490 * 179.73604 * 13 12 9 15 15 N 1.31113 * 121.75398 * 0.55033 * 14 13 12 16 16 C 1.33655 * 121.31444 * 359.72818 * 15 14 13 17 17 C 1.40608 * 121.07996 * 179.97438 * 16 15 14 18 18 C 1.36070 * 119.74614 * 180.02562 * 17 16 15 19 19 C 1.39362 * 121.07383 * 359.97438 * 18 17 16 20 20 C 1.36133 * 120.87145 * 0.02562 * 19 18 17 21 21 C 1.40440 * 119.61484 * 0.02562 * 20 19 18 22 22 H 0.96998 * 119.99986 * 175.37621 * 1 2 3 23 23 H 1.00905 * 110.99840 * 306.78450 * 11 9 7 24 24 H 1.00899 * 111.00679 * 70.73918 * 11 9 7 25 25 H 1.08000 * 120.03429 * 359.97438 * 13 12 9 26 26 H 1.08002 * 119.12299 * 180.28201 * 14 13 12 27 27 H 1.08000 * 120.12823 * 0.02562 * 17 16 15 28 28 H 1.07997 * 119.46645 * 180.02562 * 18 17 16 29 29 H 1.08001 * 119.56573 * 180.02562 * 19 18 17 30 30 H 1.08000 * 120.19231 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0776 -1.1981 0.1206 9 6 1.2605 -2.4937 -0.1701 10 1 0.4249 -2.3473 -0.8546 11 7 0.7527 -2.9409 1.1338 12 6 2.1924 -3.5366 -0.7309 13 6 2.7775 -4.4655 0.0822 14 6 3.6313 -5.4237 -0.4590 15 7 3.9052 -5.4587 -1.7407 16 6 3.3705 -4.5757 -2.5897 17 6 3.6681 -4.6174 -3.9633 18 6 3.1089 -3.7047 -4.8033 19 6 2.2416 -2.7240 -4.3255 20 6 1.9297 -2.6519 -3.0023 21 6 2.4892 -3.5770 -2.1060 22 1 -0.4850 -0.8373 -0.0677 23 1 1.4941 -2.9775 1.8173 24 1 -0.0017 -2.3503 1.4501 25 1 2.5751 -4.4593 1.1431 26 1 4.0831 -6.1546 0.1952 27 1 4.3380 -5.3711 -4.3502 28 1 3.3402 -3.7412 -5.8576 29 1 1.8111 -2.0119 -5.0140 30 1 1.2559 -1.8877 -2.6440 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095682330.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:41 Heat of formation + Delta-G solvation = 42.538222 kcal Electronic energy + Delta-G solvation = -15217.261943 eV Core-core repulsion = 12783.587246 eV Total energy + Delta-G solvation = -2433.674697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31078 -36.64680 -35.68195 -32.56769 -31.01899 -30.00496 -29.12665 -25.97453 -23.86679 -23.05442 -22.38561 -20.04625 -17.62611 -17.11015 -16.88223 -15.99877 -14.77966 -14.08406 -13.93619 -13.76910 -13.69198 -13.28611 -13.04876 -12.72327 -12.18837 -12.08906 -11.30433 -11.15540 -10.95586 -10.76933 -10.35877 -10.19908 -9.92211 -9.38088 -8.89242 -8.77079 -8.25446 -7.72478 -7.45323 -6.61328 -4.42436 0.99717 1.37063 2.62356 3.28161 3.33022 3.46264 3.48724 4.30692 4.69504 4.77172 5.04330 5.14458 5.24468 5.43696 5.51021 5.63837 5.70746 5.85505 6.01170 6.15379 6.36141 6.54713 6.58353 6.64838 6.78987 6.87781 7.07763 7.32248 7.39317 7.68290 8.07602 8.27426 8.43760 8.48794 8.56839 9.29029 10.70818 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.010113 C = 0.008266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.841406 B = 2767.953743 C = 3386.446466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.032 3.968 3 Si 1.068 2.932 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.622 4.622 8 H 0.051 0.949 9 C 0.219 3.781 10 H 0.059 0.941 11 N -0.853 5.853 12 C 0.042 3.958 13 C -0.193 4.193 14 C 0.133 3.867 15 N -0.505 5.505 16 C 0.126 3.874 17 C -0.111 4.111 18 C -0.101 4.101 19 C -0.145 4.145 20 C -0.061 4.061 21 C -0.101 4.101 22 H 0.271 0.729 23 H 0.325 0.675 24 H 0.335 0.665 25 H 0.134 0.866 26 H 0.149 0.851 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.157 -5.476 -4.312 8.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.896 3.104 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.662 4.662 8 H 0.070 0.930 9 C 0.110 3.890 10 H 0.076 0.924 11 N -0.381 5.381 12 C 0.033 3.967 13 C -0.214 4.214 14 C -0.038 4.038 15 N -0.214 5.214 16 C 0.004 3.996 17 C -0.130 4.130 18 C -0.121 4.121 19 C -0.163 4.163 20 C -0.079 4.079 21 C -0.103 4.103 22 H 0.082 0.918 23 H 0.136 0.864 24 H 0.147 0.853 25 H 0.152 0.848 26 H 0.166 0.834 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.310 -5.137 -5.083 8.415 hybrid contribution 0.056 -0.014 0.692 0.694 sum 4.366 -5.150 -4.392 8.055 Atomic orbital electron populations 1.70849 1.06732 1.31171 1.44836 1.25902 0.96325 1.02635 0.92645 0.83541 0.74932 0.74867 0.77081 1.21264 1.21247 1.20672 1.22423 0.95794 0.91602 1.56364 0.93047 1.18201 0.92554 0.89211 0.89018 0.92378 1.59513 1.14225 1.58309 1.06036 1.20644 0.92521 0.92271 0.91224 1.21594 1.00578 0.97426 1.01783 1.22815 0.93493 0.96029 0.91438 1.67961 1.24540 1.24945 1.03988 1.18852 0.94636 0.92120 0.93960 1.20616 1.01278 1.00050 0.91056 1.20784 0.96958 0.94981 0.99398 1.20831 1.00081 0.99549 0.95861 1.21252 0.97462 0.96650 0.92569 1.18762 0.99674 0.97466 0.94428 0.91755 0.86403 0.85325 0.84822 0.83401 0.85605 0.86120 0.86135 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.55 13.63 55.43 0.76 -23.80 16 2 C 0.03 0.82 5.45 -17.82 -0.10 0.73 16 3 Si 1.07 23.80 29.91 -169.99 -5.08 18.71 16 4 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.62 -15.97 8.27 -34.44 -0.28 -16.25 16 8 H 0.05 1.39 7.82 -52.49 -0.41 0.98 16 9 C 0.22 5.12 1.93 -70.02 -0.13 4.99 16 10 H 0.06 1.47 5.98 -51.93 -0.31 1.16 16 11 N -0.85 -18.19 8.55 -6.65 -0.06 -18.25 16 12 C 0.04 0.92 5.10 -104.27 -0.53 0.39 16 13 C -0.19 -3.75 9.29 -39.78 -0.37 -4.12 16 14 C 0.13 2.37 11.14 -17.47 -0.19 2.17 16 15 N -0.50 -9.80 10.34 -10.98 -0.11 -9.91 16 16 C 0.13 2.50 6.60 -84.86 -0.56 1.94 16 17 C -0.11 -1.88 9.98 -39.47 -0.39 -2.27 16 18 C -0.10 -1.54 9.94 -39.94 -0.40 -1.93 16 19 C -0.15 -2.41 9.95 -39.92 -0.40 -2.81 16 20 C -0.06 -1.21 9.23 -39.51 -0.36 -1.58 16 21 C -0.10 -2.14 5.74 -106.80 -0.61 -2.76 16 22 H 0.27 7.30 6.21 -40.82 -0.25 7.05 16 23 H 0.33 6.60 7.69 -39.29 -0.30 6.30 16 24 H 0.33 7.35 8.43 -39.29 -0.33 7.01 16 25 H 0.13 2.39 6.51 -52.49 -0.34 2.04 16 26 H 0.15 2.04 8.06 -52.49 -0.42 1.61 16 27 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.14 2.93 6.56 -52.49 -0.34 2.59 16 LS Contribution 257.81 15.07 3.89 3.89 Total: -1.00 -28.26 257.81 -7.73 -35.99 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -2.78 Total: 14.88 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -4.34 Total: -21.51 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.58 Total: -51.96 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.08 Total: 18.71 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.26 -7.73 -35.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095682330.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.529 kcal (2) G-P(sol) polarization free energy of solvation -28.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds