Wall clock time and date at job start Mon Mar 30 2020 02:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00148 * 2 1 4 4 H 1.48507 * 109.47058 * 90.00469 * 3 2 1 5 5 H 1.48503 * 109.47134 * 210.00092 * 3 2 1 6 6 H 1.48494 * 109.47375 * 330.00419 * 3 2 1 7 7 C 1.37878 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99725 * 187.44134 * 7 2 1 9 9 C 1.50703 * 120.00330 * 7.43789 * 7 2 1 10 10 H 1.09007 * 109.46829 * 35.34837 * 9 7 2 11 11 N 1.46897 * 109.47104 * 275.35212 * 9 7 2 12 12 C 1.50689 * 109.47348 * 155.34595 * 9 7 2 13 13 C 1.36611 * 120.92570 * 99.72407 * 12 9 7 14 14 C 1.39288 * 119.93490 * 179.73604 * 13 12 9 15 15 N 1.31113 * 121.75398 * 0.55033 * 14 13 12 16 16 C 1.33655 * 121.31444 * 359.72818 * 15 14 13 17 17 C 1.40608 * 121.07996 * 179.97438 * 16 15 14 18 18 C 1.36070 * 119.74614 * 180.02562 * 17 16 15 19 19 C 1.39362 * 121.07383 * 359.97438 * 18 17 16 20 20 C 1.36133 * 120.87145 * 0.02562 * 19 18 17 21 21 C 1.40440 * 119.61484 * 0.02562 * 20 19 18 22 22 H 0.96998 * 119.99986 * 175.37621 * 1 2 3 23 23 H 1.00905 * 110.99840 * 306.78450 * 11 9 7 24 24 H 1.00899 * 111.00679 * 70.73918 * 11 9 7 25 25 H 1.08000 * 120.03429 * 359.97438 * 13 12 9 26 26 H 1.08002 * 119.12299 * 180.28201 * 14 13 12 27 27 H 1.08000 * 120.12823 * 0.02562 * 17 16 15 28 28 H 1.07997 * 119.46645 * 180.02562 * 18 17 16 29 29 H 1.08001 * 119.56573 * 180.02562 * 19 18 17 30 30 H 1.08000 * 120.19231 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0776 -1.1981 0.1206 9 6 1.2605 -2.4937 -0.1701 10 1 0.4249 -2.3473 -0.8546 11 7 0.7527 -2.9409 1.1338 12 6 2.1924 -3.5366 -0.7309 13 6 2.7775 -4.4655 0.0822 14 6 3.6313 -5.4237 -0.4590 15 7 3.9052 -5.4587 -1.7407 16 6 3.3705 -4.5757 -2.5897 17 6 3.6681 -4.6174 -3.9633 18 6 3.1089 -3.7047 -4.8033 19 6 2.2416 -2.7240 -4.3255 20 6 1.9297 -2.6519 -3.0023 21 6 2.4892 -3.5770 -2.1060 22 1 -0.4850 -0.8373 -0.0677 23 1 1.4941 -2.9775 1.8173 24 1 -0.0017 -2.3503 1.4501 25 1 2.5751 -4.4593 1.1431 26 1 4.0831 -6.1546 0.1952 27 1 4.3380 -5.3711 -4.3502 28 1 3.3402 -3.7412 -5.8576 29 1 1.8111 -2.0119 -5.0140 30 1 1.2559 -1.8877 -2.6440 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095682330.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:41 Heat of formation + Delta-G solvation = 24.272256 kcal Electronic energy + Delta-G solvation = -15218.054015 eV Core-core repulsion = 12783.587246 eV Total energy + Delta-G solvation = -2434.466768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.76601 -38.08858 -37.39099 -34.33588 -32.70702 -31.41647 -30.59838 -27.84939 -25.53060 -24.52182 -23.93643 -21.65138 -19.27252 -18.75693 -18.42405 -17.52409 -16.36118 -15.76501 -15.58414 -15.23859 -15.14820 -14.73132 -14.65760 -14.50108 -13.99710 -13.61312 -12.74919 -12.67886 -12.53743 -12.23003 -12.07311 -11.95935 -11.70710 -11.09243 -10.73484 -10.39741 -9.66411 -9.44230 -9.09896 -8.63981 -6.49969 -0.44925 -0.05053 1.12657 1.47399 1.53534 1.72414 2.08617 2.45670 3.03959 3.23496 3.44070 3.63945 3.90853 3.99939 4.06674 4.22009 4.33929 4.40895 4.57159 4.65004 4.71718 5.06675 5.16861 5.20483 5.28290 5.47790 5.61610 5.73269 5.78815 5.98488 6.01426 6.44012 6.44863 6.74461 6.97300 7.27170 8.63016 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.010113 C = 0.008266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.841406 B = 2767.953743 C = 3386.446466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 1.109 2.891 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.622 4.622 8 H 0.033 0.967 9 C 0.228 3.772 10 H 0.029 0.971 11 N -0.841 5.841 12 C 0.005 3.995 13 C -0.192 4.192 14 C 0.133 3.867 15 N -0.508 5.508 16 C 0.102 3.898 17 C -0.113 4.113 18 C -0.089 4.089 19 C -0.128 4.128 20 C -0.098 4.098 21 C -0.123 4.123 22 H 0.262 0.738 23 H 0.332 0.668 24 H 0.330 0.670 25 H 0.145 0.855 26 H 0.192 0.808 27 H 0.152 0.848 28 H 0.170 0.830 29 H 0.149 0.851 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.734 -6.248 -5.554 10.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.931 3.069 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.662 4.662 8 H 0.052 0.948 9 C 0.119 3.881 10 H 0.047 0.953 11 N -0.368 5.368 12 C -0.004 4.004 13 C -0.212 4.212 14 C -0.038 4.038 15 N -0.217 5.217 16 C -0.019 4.019 17 C -0.131 4.131 18 C -0.108 4.108 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.125 4.125 22 H 0.073 0.927 23 H 0.144 0.856 24 H 0.141 0.859 25 H 0.162 0.838 26 H 0.209 0.791 27 H 0.170 0.830 28 H 0.187 0.813 29 H 0.167 0.833 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.890 -5.925 -6.320 10.476 hybrid contribution -0.409 0.142 1.001 1.091 sum 5.480 -5.783 -5.319 9.579 Atomic orbital electron populations 1.70935 1.07383 1.30704 1.46725 1.27017 0.96431 1.05538 0.92058 0.83008 0.74102 0.71981 0.77772 1.19892 1.20657 1.20467 1.22524 0.94822 0.93055 1.55754 0.94841 1.17925 0.91785 0.89358 0.89055 0.95321 1.59453 1.14131 1.57656 1.05559 1.20632 0.93895 0.93418 0.92452 1.21818 1.00231 0.97042 1.02106 1.23407 0.92744 0.96110 0.91540 1.68050 1.24408 1.24696 1.04566 1.19292 0.94884 0.92101 0.95615 1.21018 1.01386 1.00888 0.89830 1.21259 0.94982 0.93075 1.01526 1.21234 0.98909 0.99777 0.94698 1.21139 0.99055 0.97152 0.94378 1.18970 1.00632 0.98511 0.94410 0.92706 0.85628 0.85873 0.83750 0.79137 0.82990 0.81301 0.83334 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.71 13.63 21.45 0.29 -51.41 16 2 C -0.01 -0.47 5.45 84.65 0.46 -0.01 16 3 Si 1.11 48.37 29.91 68.60 2.05 50.42 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.62 -32.96 8.27 25.60 0.21 -32.75 16 8 H 0.03 1.86 7.82 -2.91 -0.02 1.83 16 9 C 0.23 11.13 1.93 43.42 0.08 11.21 16 10 H 0.03 1.56 5.98 -2.38 -0.01 1.54 16 11 N -0.84 -36.86 8.55 -174.96 -1.50 -38.36 16 12 C 0.00 0.21 5.10 -19.64 -0.10 0.11 16 13 C -0.19 -7.38 9.29 22.14 0.21 -7.17 16 14 C 0.13 4.50 11.14 85.05 0.95 5.45 16 15 N -0.51 -18.80 10.34 -188.64 -1.95 -20.75 16 16 C 0.10 3.94 6.60 40.30 0.27 4.20 16 17 C -0.11 -3.47 9.98 22.34 0.22 -3.24 16 18 C -0.09 -2.37 9.94 22.04 0.22 -2.15 16 19 C -0.13 -4.04 9.95 22.05 0.22 -3.82 16 20 C -0.10 -4.03 9.23 22.32 0.21 -3.82 16 21 C -0.12 -5.30 5.74 -21.28 -0.12 -5.42 16 22 H 0.26 14.79 6.21 -92.71 -0.58 14.21 16 23 H 0.33 13.67 7.69 -89.69 -0.69 12.98 16 24 H 0.33 14.99 8.43 -89.69 -0.76 14.23 16 25 H 0.14 5.06 6.51 -2.91 -0.02 5.04 16 26 H 0.19 4.62 8.06 -2.91 -0.02 4.59 16 27 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 28 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.11 4.91 6.56 -2.91 -0.02 4.89 16 Total: -1.00 -62.54 257.81 1.65 -60.89 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -0.07 Total: 36.62 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 2.82 Total: -37.41 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -3.16 Total: -110.52 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.05 Total: 50.42 kcal Total: -62.54 1.65 -60.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095682330.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.166 kcal (2) G-P(sol) polarization free energy of solvation -62.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds