Wall clock time and date at job start Mon Mar 30 2020 02:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 11 11 N 1.46906 * 109.46675 * 299.99446 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.39329 * 120.03936 * 79.99464 * 12 9 7 14 14 N 1.31078 * 121.75176 * 179.97438 * 13 12 9 15 15 C 1.33686 * 121.32001 * 359.97438 * 14 13 12 16 16 C 1.40594 * 121.06792 * 180.02562 * 15 14 13 17 17 C 1.36081 * 119.74634 * 179.97438 * 16 15 14 18 18 C 1.39358 * 121.06275 * 0.04378 * 17 16 15 19 19 C 1.36140 * 120.87025 * 359.95388 * 18 17 16 20 20 C 1.40418 * 119.61532 * 0.02562 * 19 18 17 21 21 C 1.36580 * 120.02835 * 259.72143 * 12 9 7 22 22 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 23 23 H 1.00899 * 110.99290 * 176.04796 * 11 9 7 24 24 H 1.00897 * 111.00195 * 299.99919 * 11 9 7 25 25 H 1.08007 * 119.12226 * 359.97438 * 13 12 9 26 26 H 1.08000 * 120.13112 * 359.95969 * 16 15 14 27 27 H 1.07994 * 119.46731 * 180.02562 * 17 16 15 28 28 H 1.07998 * 119.56085 * 179.97438 * 18 17 16 29 29 H 1.07999 * 120.19117 * 179.97438 * 19 18 17 30 30 H 1.08005 * 120.92731 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5564 -0.8919 11 7 0.4061 -2.5777 1.1975 12 6 2.2303 -3.6446 -0.0015 13 6 2.8419 -4.0391 1.1866 14 7 3.6981 -5.0308 1.2255 15 6 4.0237 -5.7114 0.1219 16 6 4.9423 -6.7747 0.1698 17 6 5.2540 -7.4496 -0.9700 18 6 4.6772 -7.1041 -2.1907 19 6 3.7837 -6.0805 -2.2763 20 6 3.4383 -5.3624 -1.1202 21 6 2.5150 -4.3007 -1.1650 22 1 -0.4850 -0.8401 -0.0004 23 1 -0.1579 -3.4143 1.1882 24 1 0.9638 -2.5269 2.0368 25 1 2.6042 -3.5137 2.0999 26 1 5.3991 -7.0547 1.1075 27 1 5.9599 -8.2658 -0.9280 28 1 4.9424 -7.6559 -3.0804 29 1 3.3437 -5.8219 -3.2281 30 1 2.0472 -4.0109 -2.0944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104501764.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:47 Heat of formation + Delta-G solvation = 26.085729 kcal Electronic energy + Delta-G solvation = -14835.574159 eV Core-core repulsion = 12401.186029 eV Total energy + Delta-G solvation = -2434.388130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.82069 -38.59785 -36.64730 -34.36935 -33.27381 -31.09923 -30.74487 -27.64276 -25.22136 -24.98631 -23.16423 -22.55491 -19.20484 -18.87363 -18.01991 -17.51716 -16.37097 -15.86739 -15.58019 -15.46476 -15.32798 -14.91683 -14.50285 -14.15515 -14.00443 -13.53045 -12.84546 -12.68848 -12.58986 -12.35320 -12.25230 -11.91500 -11.56672 -10.75183 -10.60340 -10.47282 -9.67011 -9.37077 -9.14633 -8.41266 -6.28642 -0.57005 -0.13238 1.02573 1.55810 1.62299 1.81914 1.99029 2.61948 3.12115 3.27737 3.31270 3.65421 3.82194 3.91966 4.01520 4.16894 4.21563 4.27663 4.46966 4.50578 4.81478 4.91602 5.09384 5.11847 5.28672 5.43898 5.50891 5.60721 5.86459 5.94866 6.15448 6.61105 6.74063 6.85658 6.98385 7.61979 8.95474 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.040887 B = 0.006643 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.643630 B = 4213.866230 C = 4325.616631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 1.107 2.893 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.620 4.620 8 H 0.032 0.968 9 C 0.250 3.750 10 H 0.017 0.983 11 N -0.834 5.834 12 C -0.142 4.142 13 C 0.129 3.871 14 N -0.494 5.494 15 C 0.083 3.917 16 C -0.111 4.111 17 C -0.096 4.096 18 C -0.110 4.110 19 C -0.109 4.109 20 C -0.112 4.112 21 C -0.078 4.078 22 H 0.280 0.720 23 H 0.319 0.681 24 H 0.332 0.668 25 H 0.154 0.846 26 H 0.141 0.859 27 H 0.167 0.833 28 H 0.165 0.835 29 H 0.146 0.854 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.758 -14.132 -3.681 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.210 4.210 3 Si 0.931 3.069 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.658 4.658 8 H 0.051 0.949 9 C 0.140 3.860 10 H 0.034 0.966 11 N -0.363 5.363 12 C -0.146 4.146 13 C -0.043 4.043 14 N -0.202 5.202 15 C -0.038 4.038 16 C -0.129 4.129 17 C -0.115 4.115 18 C -0.127 4.127 19 C -0.128 4.128 20 C -0.114 4.114 21 C -0.105 4.105 22 H 0.091 0.909 23 H 0.131 0.869 24 H 0.146 0.854 25 H 0.171 0.829 26 H 0.159 0.841 27 H 0.184 0.816 28 H 0.182 0.818 29 H 0.164 0.836 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.647 -12.157 -3.176 15.253 hybrid contribution -0.024 -1.895 -0.331 1.924 sum 8.623 -14.052 -3.508 16.856 Atomic orbital electron populations 1.70674 1.07618 1.32237 1.44374 1.26895 0.96667 1.05189 0.92219 0.83062 0.74188 0.72312 0.77376 1.20866 1.20254 1.20259 1.21922 0.92928 0.92122 1.58841 0.94931 1.17991 0.87899 0.90132 0.90007 0.96563 1.59209 1.28642 1.43564 1.04890 1.21897 1.00176 0.97993 0.94576 1.22739 0.91394 0.92245 0.97970 1.68020 1.14051 1.07488 1.30609 1.19423 0.98411 0.97381 0.88626 1.21008 0.96895 0.94179 1.00834 1.21322 0.99242 0.99598 0.91337 1.21360 0.95533 0.96515 0.99333 1.21292 0.98684 0.95900 0.96893 1.19136 0.98576 0.97747 0.95909 1.21541 0.96353 0.93912 0.98647 0.90872 0.86917 0.85430 0.82875 0.84123 0.81592 0.81762 0.83577 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.90 13.51 21.45 0.29 -54.61 16 2 C -0.01 -0.29 5.39 84.66 0.46 0.16 16 3 Si 1.11 50.48 29.90 68.60 2.05 52.53 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.62 -34.42 8.71 25.60 0.22 -34.19 16 8 H 0.03 1.85 7.74 -2.91 -0.02 1.83 16 9 C 0.25 12.24 2.47 43.42 0.11 12.35 16 10 H 0.02 0.88 7.87 -2.39 -0.02 0.86 16 11 N -0.83 -37.71 7.62 -174.94 -1.33 -39.04 16 12 C -0.14 -6.10 4.86 -19.99 -0.10 -6.20 16 13 C 0.13 5.27 10.42 85.07 0.89 6.15 16 14 N -0.49 -19.38 10.34 -188.64 -1.95 -21.33 16 15 C 0.08 2.93 6.60 40.29 0.27 3.20 16 16 C -0.11 -2.98 9.98 22.34 0.22 -2.76 16 17 C -0.10 -1.87 9.94 22.04 0.22 -1.65 16 18 C -0.11 -2.11 9.96 22.05 0.22 -1.89 16 19 C -0.11 -2.76 9.78 22.31 0.22 -2.55 16 20 C -0.11 -3.82 5.74 -21.28 -0.12 -3.94 16 21 C -0.08 -3.00 9.50 22.50 0.21 -2.79 16 22 H 0.28 16.89 6.39 -92.71 -0.59 16.30 16 23 H 0.32 12.69 9.06 -89.69 -0.81 11.88 16 24 H 0.33 14.36 7.32 -89.70 -0.66 13.70 16 25 H 0.15 6.00 6.63 -2.91 -0.02 5.98 16 26 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 27 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 28 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.14 4.98 8.04 -2.91 -0.02 4.96 16 Total: -1.00 -67.47 261.32 1.75 -65.72 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -0.12 Total: 30.84 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 2.81 Total: -34.11 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -2.99 Total: -114.99 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -67.47 1.75 -65.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104501764.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.803 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds