Wall clock time and date at job start Mon Mar 30 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99734 * 2 1 4 4 H 1.48498 * 109.46889 * 239.99856 * 3 2 1 5 5 H 1.48504 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47370 * 119.99306 * 3 2 1 7 7 C 1.37877 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.50692 * 109.46891 * 179.97438 * 9 7 2 11 11 C 1.35084 * 126.01422 * 85.00475 * 10 9 7 12 12 C 1.40845 * 107.85322 * 179.97438 * 11 10 9 13 13 C 1.48421 * 126.03634 * 180.02562 * 12 11 10 14 14 C 1.39322 * 120.11787 * 359.72477 * 13 12 11 15 15 C 1.38029 * 119.87198 * 179.75066 * 14 13 12 16 16 C 1.38315 * 120.12273 * 0.52701 * 15 14 13 17 17 C 1.38322 * 120.24150 * 359.74798 * 16 15 14 18 18 C 1.38017 * 120.11610 * 359.97420 * 17 16 15 19 19 N 1.31617 * 107.92551 * 0.02562 * 12 11 10 20 20 N 1.35040 * 126.01110 * 264.95424 * 10 9 7 21 21 H 0.97001 * 125.93450 * 0.04428 * 20 10 9 22 22 H 0.96994 * 120.00379 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46938 * 59.99985 * 9 7 2 24 24 H 1.08996 * 109.46970 * 300.00613 * 9 7 2 25 25 H 1.08009 * 126.06965 * 0.22799 * 11 10 9 26 26 H 1.07999 * 120.06502 * 0.02562 * 14 13 12 27 27 H 1.08005 * 119.93372 * 180.29691 * 15 14 13 28 28 H 1.08001 * 119.87915 * 179.72543 * 16 15 14 29 29 H 1.07995 * 119.93739 * 179.97438 * 17 16 15 30 30 H 1.08003 * 120.05564 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2305 -3.6444 0.0005 11 6 2.8191 -4.1863 1.0890 12 6 3.6593 -5.2286 0.6518 13 6 4.4985 -6.0948 1.5168 14 6 4.5049 -5.9078 2.8974 15 6 5.2833 -6.7197 3.6975 16 6 6.0643 -7.7102 3.1301 17 6 6.0662 -7.8964 1.7595 18 6 5.2872 -7.0941 0.9506 19 7 3.5689 -5.2988 -0.6594 20 7 2.6735 -4.3103 -1.0876 21 1 2.4170 -4.1341 -2.0063 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 2.6685 -3.8778 2.1132 26 1 3.8985 -5.1321 3.3411 27 1 5.2852 -6.5787 4.7683 28 1 6.6753 -8.3402 3.7595 29 1 6.6782 -8.6710 1.3217 30 1 5.2891 -7.2406 -0.1195 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118755387.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:01 Heat of formation + Delta-G solvation = 79.977950 kcal Electronic energy + Delta-G solvation = -14288.278848 eV Core-core repulsion = 11856.227659 eV Total energy + Delta-G solvation = -2432.051188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.54112 -38.66989 -33.60966 -32.37595 -30.96940 -30.46555 -29.09517 -27.05431 -23.42530 -23.14595 -22.20722 -19.68884 -19.46448 -16.73752 -16.48791 -16.26163 -15.10073 -14.67714 -14.33849 -14.04075 -13.41785 -13.28950 -12.81784 -12.66660 -12.40640 -12.03757 -11.48792 -11.17129 -11.03678 -10.83139 -10.72950 -10.09215 -9.90455 -9.77182 -9.43508 -8.82523 -8.55527 -8.01406 -7.78109 -6.17861 -4.23124 1.19255 1.53167 2.73000 3.26162 3.30431 3.32795 3.44149 3.49666 4.19541 4.35533 4.88283 4.99767 5.05652 5.17726 5.23777 5.54790 5.59149 5.82258 5.99896 6.11859 6.21741 6.44082 6.45851 6.59099 6.68883 6.78828 7.08057 7.24939 7.31060 7.41357 7.77253 7.94785 8.15488 8.32759 8.80928 9.42216 10.91951 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.041099 B = 0.005394 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.111764 B = 5189.865878 C = 5483.097241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.070 3.930 10 C 0.147 3.853 11 C -0.281 4.281 12 C 0.101 3.899 13 C 0.002 3.998 14 C -0.097 4.097 15 C -0.122 4.122 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.099 4.099 19 N -0.312 5.312 20 N -0.474 5.474 21 H 0.435 0.565 22 H 0.265 0.735 23 H 0.032 0.968 24 H 0.050 0.950 25 H 0.142 0.858 26 H 0.130 0.870 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.999 -11.740 4.211 14.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.031 3.969 10 C 0.018 3.982 11 C -0.309 4.309 12 C -0.063 4.063 13 C 0.001 3.999 14 C -0.117 4.117 15 C -0.140 4.140 16 C -0.143 4.143 17 C -0.143 4.143 18 C -0.118 4.118 19 N -0.136 5.136 20 N -0.182 5.182 21 H 0.279 0.721 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.160 0.840 26 H 0.148 0.852 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.209 -12.205 3.151 15.043 hybrid contribution 0.011 1.527 0.190 1.539 sum 8.220 -10.678 3.342 13.884 Atomic orbital electron populations 1.69929 1.06052 1.27326 1.49703 1.24982 0.94908 0.99381 0.94747 0.86522 0.79494 0.82404 0.78868 1.20170 1.21098 1.19961 1.20937 0.93162 0.89493 1.52210 0.92260 1.18110 0.91592 0.87790 0.99417 1.22094 0.96221 0.93730 0.86109 1.21043 1.07261 1.02909 0.99729 1.20562 0.97927 0.96663 0.91126 1.17939 0.95615 0.94462 0.91929 1.21234 0.98789 0.99273 0.92418 1.21046 0.97281 0.96018 0.99704 1.21157 0.99573 0.98525 0.95056 1.21049 0.99713 0.99790 0.93788 1.21265 0.95615 0.94616 1.00331 1.77247 1.13090 1.11466 1.11811 1.46260 1.35892 1.26990 1.09054 0.72131 0.92516 0.95019 0.93226 0.84043 0.85238 0.85913 0.86346 0.86161 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.00 9.09 -34.44 -0.31 -14.32 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.07 1.70 5.52 -29.04 -0.16 1.54 16 10 C 0.15 3.20 6.38 -82.31 -0.53 2.67 16 11 C -0.28 -5.78 10.08 -39.72 -0.40 -6.18 16 12 C 0.10 1.96 6.99 -82.78 -0.58 1.38 16 13 C 0.00 0.04 5.88 -104.90 -0.62 -0.58 16 14 C -0.10 -1.39 9.58 -39.26 -0.38 -1.76 16 15 C -0.12 -1.44 10.03 -39.63 -0.40 -1.84 16 16 C -0.12 -1.38 10.04 -39.52 -0.40 -1.77 16 17 C -0.13 -1.49 10.03 -39.63 -0.40 -1.89 16 18 C -0.10 -1.44 9.69 -39.26 -0.38 -1.82 16 19 N -0.31 -6.22 12.37 33.43 0.41 -5.81 16 20 N -0.47 -9.39 7.35 33.45 0.25 -9.14 16 21 H 0.44 7.41 8.96 -182.61 -1.64 5.78 16 22 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 25 H 0.14 2.71 7.34 -52.48 -0.39 2.32 16 26 H 0.13 1.75 7.04 -52.49 -0.37 1.38 16 27 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.13 1.83 7.85 -52.48 -0.41 1.41 16 LS Contribution 270.33 15.07 4.07 4.07 Total: -1.00 -29.78 270.33 -8.65 -38.43 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.46 Total: 3.99 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -4.64 Total: -22.97 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 1.40 Total: -39.46 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.78 -8.65 -38.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118755387.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.411 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds