Wall clock time and date at job start Mon Mar 30 2020 02:49:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86804 * 119.99734 * 2 1
4 4 H 1.48498 * 109.46889 * 239.99856 * 3 2 1
5 5 H 1.48504 * 109.46935 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47370 * 119.99306 * 3 2 1
7 7 C 1.37877 * 120.00326 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00045 * 180.02562 * 7 2 1
9 9 C 1.50700 * 120.00028 * 0.02562 * 7 2 1
10 10 C 1.50692 * 109.46891 * 179.97438 * 9 7 2
11 11 C 1.35084 * 126.01422 * 85.00475 * 10 9 7
12 12 C 1.40845 * 107.85322 * 179.97438 * 11 10 9
13 13 C 1.48421 * 126.03634 * 180.02562 * 12 11 10
14 14 C 1.39322 * 120.11787 * 359.72477 * 13 12 11
15 15 C 1.38029 * 119.87198 * 179.75066 * 14 13 12
16 16 C 1.38315 * 120.12273 * 0.52701 * 15 14 13
17 17 C 1.38322 * 120.24150 * 359.74798 * 16 15 14
18 18 C 1.38017 * 120.11610 * 359.97420 * 17 16 15
19 19 N 1.31617 * 107.92551 * 0.02562 * 12 11 10
20 20 N 1.35040 * 126.01110 * 264.95424 * 10 9 7
21 21 H 0.97001 * 125.93450 * 0.04428 * 20 10 9
22 22 H 0.96994 * 120.00379 * 0.02562 * 1 2 3
23 23 H 1.09002 * 109.46938 * 59.99985 * 9 7 2
24 24 H 1.08996 * 109.46970 * 300.00613 * 9 7 2
25 25 H 1.08009 * 126.06965 * 0.22799 * 11 10 9
26 26 H 1.07999 * 120.06502 * 0.02562 * 14 13 12
27 27 H 1.08005 * 119.93372 * 180.29691 * 15 14 13
28 28 H 1.08001 * 119.87915 * 179.72543 * 16 15 14
29 29 H 1.07995 * 119.93739 * 179.97438 * 17 16 15
30 30 H 1.08003 * 120.05564 * 180.02562 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6964 -1.2125
5 1 1.2840 2.7465 -0.0006
6 1 3.1027 1.6966 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2512 -2.4992 0.0005
10 6 2.2305 -3.6444 0.0005
11 6 2.8191 -4.1863 1.0890
12 6 3.6593 -5.2286 0.6518
13 6 4.4985 -6.0948 1.5168
14 6 4.5049 -5.9078 2.8974
15 6 5.2833 -6.7197 3.6975
16 6 6.0643 -7.7102 3.1301
17 6 6.0662 -7.8964 1.7595
18 6 5.2872 -7.0941 0.9506
19 7 3.5689 -5.2988 -0.6594
20 7 2.6735 -4.3103 -1.0876
21 1 2.4170 -4.1341 -2.0063
22 1 -0.4850 0.8400 -0.0004
23 1 0.6249 -2.5571 -0.8897
24 1 0.6241 -2.5567 0.8902
25 1 2.6685 -3.8778 2.1132
26 1 3.8985 -5.1321 3.3411
27 1 5.2852 -6.5787 4.7683
28 1 6.6753 -8.3402 3.7595
29 1 6.6782 -8.6710 1.3217
30 1 5.2891 -7.2406 -0.1195
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000118755387.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:01
Heat of formation + Delta-G solvation = 79.977950 kcal
Electronic energy + Delta-G solvation = -14288.278848 eV
Core-core repulsion = 11856.227659 eV
Total energy + Delta-G solvation = -2432.051188 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 228.096 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.54112 -38.66989 -33.60966 -32.37595 -30.96940 -30.46555 -29.09517 -27.05431
-23.42530 -23.14595 -22.20722 -19.68884 -19.46448 -16.73752 -16.48791 -16.26163
-15.10073 -14.67714 -14.33849 -14.04075 -13.41785 -13.28950 -12.81784 -12.66660
-12.40640 -12.03757 -11.48792 -11.17129 -11.03678 -10.83139 -10.72950 -10.09215
-9.90455 -9.77182 -9.43508 -8.82523 -8.55527 -8.01406 -7.78109 -6.17861
-4.23124 1.19255 1.53167 2.73000 3.26162 3.30431 3.32795 3.44149
3.49666 4.19541 4.35533 4.88283 4.99767 5.05652 5.17726 5.23777
5.54790 5.59149 5.82258 5.99896 6.11859 6.21741 6.44082 6.45851
6.59099 6.68883 6.78828 7.08057 7.24939 7.31060 7.41357 7.77253
7.94785 8.15488 8.32759 8.80928 9.42216 10.91951
Molecular weight = 228.10amu
Principal moments of inertia in cm(-1)
A = 0.041099 B = 0.005394 C = 0.005105
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 681.111764 B = 5189.865878 C = 5483.097241
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.062 3.938
3 Si 0.900 3.100
4 H -0.276 1.276
5 H -0.285 1.285
6 H -0.274 1.274
7 C -0.519 4.519
8 H 0.059 0.941
9 C 0.070 3.930
10 C 0.147 3.853
11 C -0.281 4.281
12 C 0.101 3.899
13 C 0.002 3.998
14 C -0.097 4.097
15 C -0.122 4.122
16 C -0.124 4.124
17 C -0.125 4.125
18 C -0.099 4.099
19 N -0.312 5.312
20 N -0.474 5.474
21 H 0.435 0.565
22 H 0.265 0.735
23 H 0.032 0.968
24 H 0.050 0.950
25 H 0.142 0.858
26 H 0.130 0.870
27 H 0.123 0.877
28 H 0.119 0.881
29 H 0.120 0.880
30 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.999 -11.740 4.211 14.817
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.140 4.140
3 Si 0.727 3.273
4 H -0.202 1.202
5 H -0.211 1.211
6 H -0.200 1.200
7 C -0.558 4.558
8 H 0.077 0.923
9 C 0.031 3.969
10 C 0.018 3.982
11 C -0.309 4.309
12 C -0.063 4.063
13 C 0.001 3.999
14 C -0.117 4.117
15 C -0.140 4.140
16 C -0.143 4.143
17 C -0.143 4.143
18 C -0.118 4.118
19 N -0.136 5.136
20 N -0.182 5.182
21 H 0.279 0.721
22 H 0.075 0.925
23 H 0.050 0.950
24 H 0.068 0.932
25 H 0.160 0.840
26 H 0.148 0.852
27 H 0.141 0.859
28 H 0.137 0.863
29 H 0.138 0.862
30 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 8.209 -12.205 3.151 15.043
hybrid contribution 0.011 1.527 0.190 1.539
sum 8.220 -10.678 3.342 13.884
Atomic orbital electron populations
1.69929 1.06052 1.27326 1.49703 1.24982 0.94908 0.99381 0.94747
0.86522 0.79494 0.82404 0.78868 1.20170 1.21098 1.19961 1.20937
0.93162 0.89493 1.52210 0.92260 1.18110 0.91592 0.87790 0.99417
1.22094 0.96221 0.93730 0.86109 1.21043 1.07261 1.02909 0.99729
1.20562 0.97927 0.96663 0.91126 1.17939 0.95615 0.94462 0.91929
1.21234 0.98789 0.99273 0.92418 1.21046 0.97281 0.96018 0.99704
1.21157 0.99573 0.98525 0.95056 1.21049 0.99713 0.99790 0.93788
1.21265 0.95615 0.94616 1.00331 1.77247 1.13090 1.11466 1.11811
1.46260 1.35892 1.26990 1.09054 0.72131 0.92516 0.95019 0.93226
0.84043 0.85238 0.85913 0.86346 0.86161 0.85526
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16
2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16
3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16
4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16
6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
7 C -0.52 -14.00 9.09 -34.44 -0.31 -14.32 16
8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16
9 C 0.07 1.70 5.52 -29.04 -0.16 1.54 16
10 C 0.15 3.20 6.38 -82.31 -0.53 2.67 16
11 C -0.28 -5.78 10.08 -39.72 -0.40 -6.18 16
12 C 0.10 1.96 6.99 -82.78 -0.58 1.38 16
13 C 0.00 0.04 5.88 -104.90 -0.62 -0.58 16
14 C -0.10 -1.39 9.58 -39.26 -0.38 -1.76 16
15 C -0.12 -1.44 10.03 -39.63 -0.40 -1.84 16
16 C -0.12 -1.38 10.04 -39.52 -0.40 -1.77 16
17 C -0.13 -1.49 10.03 -39.63 -0.40 -1.89 16
18 C -0.10 -1.44 9.69 -39.26 -0.38 -1.82 16
19 N -0.31 -6.22 12.37 33.43 0.41 -5.81 16
20 N -0.47 -9.39 7.35 33.45 0.25 -9.14 16
21 H 0.44 7.41 8.96 -182.61 -1.64 5.78 16
22 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16
23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
24 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16
25 H 0.14 2.71 7.34 -52.48 -0.39 2.32 16
26 H 0.13 1.75 7.04 -52.49 -0.37 1.38 16
27 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16
28 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16
29 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16
30 H 0.13 1.83 7.85 -52.48 -0.41 1.41 16
LS Contribution 270.33 15.07 4.07 4.07
Total: -1.00 -29.78 270.33 -8.65 -38.43
By element:
Atomic # 1 Polarization: 8.45 SS G_CDS: -4.46 Total: 3.99 kcal
Atomic # 6 Polarization: -18.33 SS G_CDS: -4.64 Total: -22.97 kcal
Atomic # 7 Polarization: -40.86 SS G_CDS: 1.40 Total: -39.46 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal
Total LS contribution 4.07 Total: 4.07 kcal
Total: -29.78 -8.65 -38.43 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000118755387.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.411 kcal
(2) G-P(sol) polarization free energy of solvation -29.783 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.628 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.978 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds