Wall clock time and date at job start Mon Mar 30 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99734 * 2 1 4 4 H 1.48498 * 109.46889 * 239.99856 * 3 2 1 5 5 H 1.48504 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47370 * 119.99306 * 3 2 1 7 7 C 1.37877 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.50692 * 109.46891 * 179.97438 * 9 7 2 11 11 C 1.35084 * 126.01422 * 85.00475 * 10 9 7 12 12 C 1.40845 * 107.85322 * 179.97438 * 11 10 9 13 13 C 1.48421 * 126.03634 * 180.02562 * 12 11 10 14 14 C 1.39322 * 120.11787 * 359.72477 * 13 12 11 15 15 C 1.38029 * 119.87198 * 179.75066 * 14 13 12 16 16 C 1.38315 * 120.12273 * 0.52701 * 15 14 13 17 17 C 1.38322 * 120.24150 * 359.74798 * 16 15 14 18 18 C 1.38017 * 120.11610 * 359.97420 * 17 16 15 19 19 N 1.31617 * 107.92551 * 0.02562 * 12 11 10 20 20 N 1.35040 * 126.01110 * 264.95424 * 10 9 7 21 21 H 0.97001 * 125.93450 * 0.04428 * 20 10 9 22 22 H 0.96994 * 120.00379 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46938 * 59.99985 * 9 7 2 24 24 H 1.08996 * 109.46970 * 300.00613 * 9 7 2 25 25 H 1.08009 * 126.06965 * 0.22799 * 11 10 9 26 26 H 1.07999 * 120.06502 * 0.02562 * 14 13 12 27 27 H 1.08005 * 119.93372 * 180.29691 * 15 14 13 28 28 H 1.08001 * 119.87915 * 179.72543 * 16 15 14 29 29 H 1.07995 * 119.93739 * 179.97438 * 17 16 15 30 30 H 1.08003 * 120.05564 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2305 -3.6444 0.0005 11 6 2.8191 -4.1863 1.0890 12 6 3.6593 -5.2286 0.6518 13 6 4.4985 -6.0948 1.5168 14 6 4.5049 -5.9078 2.8974 15 6 5.2833 -6.7197 3.6975 16 6 6.0643 -7.7102 3.1301 17 6 6.0662 -7.8964 1.7595 18 6 5.2872 -7.0941 0.9506 19 7 3.5689 -5.2988 -0.6594 20 7 2.6735 -4.3103 -1.0876 21 1 2.4170 -4.1341 -2.0063 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 2.6685 -3.8778 2.1132 26 1 3.8985 -5.1321 3.3411 27 1 5.2852 -6.5787 4.7683 28 1 6.6753 -8.3402 3.7595 29 1 6.6782 -8.6710 1.3217 30 1 5.2891 -7.2406 -0.1195 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118755387.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:01 Heat of formation + Delta-G solvation = 63.056349 kcal Electronic energy + Delta-G solvation = -14289.012623 eV Core-core repulsion = 11856.227659 eV Total energy + Delta-G solvation = -2432.784964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.09562 -39.71454 -35.57396 -33.81302 -32.43942 -31.75193 -30.41398 -28.90061 -25.32237 -24.35771 -23.31779 -21.20739 -20.84004 -18.64057 -18.13649 -17.50301 -16.52754 -16.12533 -15.66683 -15.51928 -14.72744 -14.43174 -14.33706 -14.17220 -13.99241 -13.60689 -13.33780 -12.75258 -12.60801 -12.21220 -12.05729 -11.82165 -11.71480 -11.49507 -10.91277 -10.64441 -9.80834 -9.54634 -9.19821 -8.26220 -6.39377 0.06449 0.54821 1.14892 1.41714 1.42527 1.51455 1.97353 2.00306 2.39953 3.06680 3.07379 3.55650 3.88436 4.17633 4.23259 4.32261 4.47313 4.64020 4.70439 4.77886 4.89679 5.08648 5.20567 5.22259 5.45077 5.52593 5.63925 5.65966 5.74302 5.78037 6.02038 6.12771 6.45266 6.69662 6.76028 7.30062 8.83295 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.041099 B = 0.005394 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.111764 B = 5189.865878 C = 5483.097241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.081 3.919 10 C 0.129 3.871 11 C -0.289 4.289 12 C 0.105 3.895 13 C -0.035 4.035 14 C -0.108 4.108 15 C -0.120 4.120 16 C -0.112 4.112 17 C -0.123 4.123 18 C -0.110 4.110 19 N -0.320 5.320 20 N -0.473 5.473 21 H 0.444 0.556 22 H 0.269 0.731 23 H 0.020 0.980 24 H 0.032 0.968 25 H 0.149 0.851 26 H 0.128 0.872 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.019 -12.671 5.484 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.070 0.930 9 C 0.042 3.958 10 C 0.000 4.000 11 C -0.318 4.318 12 C -0.059 4.059 13 C -0.037 4.037 14 C -0.128 4.128 15 C -0.138 4.138 16 C -0.130 4.130 17 C -0.141 4.141 18 C -0.130 4.130 19 N -0.144 5.144 20 N -0.182 5.182 21 H 0.289 0.711 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.050 0.950 25 H 0.167 0.833 26 H 0.146 0.854 27 H 0.171 0.829 28 H 0.174 0.826 29 H 0.168 0.832 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.228 -13.145 4.408 17.229 hybrid contribution -0.555 1.685 -0.130 1.779 sum 9.673 -11.460 4.278 15.595 Atomic orbital electron populations 1.70028 1.07438 1.28367 1.50344 1.25793 0.95715 1.02768 0.94160 0.85507 0.78328 0.78242 0.79041 1.19626 1.20302 1.19378 1.21181 0.92984 0.90850 1.52361 0.92985 1.17806 0.91690 0.88363 0.97941 1.21732 0.96869 0.93968 0.87410 1.21251 1.07364 1.03275 0.99875 1.21048 0.97429 0.96315 0.91105 1.18054 0.97283 0.95793 0.92564 1.21379 0.99547 1.00022 0.91842 1.21423 0.96147 0.95230 1.01022 1.21647 0.98487 0.97800 0.95065 1.21405 0.98950 0.99563 0.94199 1.21338 0.96217 0.94953 1.00492 1.77227 1.13244 1.11511 1.12391 1.46243 1.35920 1.26856 1.09175 0.71106 0.92230 0.96180 0.94966 0.83302 0.85400 0.82931 0.82569 0.83214 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.93 13.29 21.45 0.28 -52.64 16 2 C 0.02 0.84 5.46 84.65 0.46 1.30 16 3 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -29.45 9.09 25.60 0.23 -29.22 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.08 4.11 5.52 29.10 0.16 4.27 16 10 C 0.13 5.79 6.38 41.34 0.26 6.06 16 11 C -0.29 -12.19 10.08 22.18 0.22 -11.96 16 12 C 0.10 4.13 6.99 42.53 0.30 4.42 16 13 C -0.03 -1.13 5.88 -20.04 -0.12 -1.25 16 14 C -0.11 -2.94 9.58 22.48 0.22 -2.73 16 15 C -0.12 -2.44 10.03 22.24 0.22 -2.22 16 16 C -0.11 -1.98 10.04 22.31 0.22 -1.76 16 17 C -0.12 -2.53 10.03 22.24 0.22 -2.31 16 18 C -0.11 -3.08 9.69 22.48 0.22 -2.86 16 19 N -0.32 -12.94 12.37 -48.16 -0.60 -13.53 16 20 N -0.47 -19.21 7.35 -48.09 -0.35 -19.56 16 21 H 0.44 15.59 8.96 -213.33 -1.91 13.68 16 22 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 23 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.15 5.85 7.34 -2.91 -0.02 5.83 16 26 H 0.13 3.39 7.04 -2.91 -0.02 3.37 16 27 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 28 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.12 3.40 7.85 -2.91 -0.02 3.37 16 Total: -1.00 -64.10 270.33 3.23 -60.87 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -0.76 Total: 18.16 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 2.63 Total: -38.27 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -0.66 Total: -85.74 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -64.10 3.23 -60.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118755387.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.929 kcal (2) G-P(sol) polarization free energy of solvation -64.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds