Wall clock time and date at job start Mon Mar 30 2020 03:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00213 * 2 1 4 4 H 1.08996 * 110.75647 * 356.83066 * 3 2 1 5 5 O 1.44234 * 110.68172 * 233.62072 * 3 2 1 6 6 C 1.43373 * 107.30919 * 263.00464 * 5 3 2 7 7 C 1.52992 * 109.63485 * 240.82557 * 6 5 3 8 8 C 1.53003 * 109.62887 * 120.57900 * 6 5 3 9 9 O 1.43753 * 108.78769 * 0.70233 * 6 5 3 10 10 C 1.44781 * 104.81737 * 335.68784 * 9 6 5 11 11 H 1.08998 * 110.97671 * 277.95427 * 10 9 6 12 12 C 1.53003 * 110.97950 * 154.21494 * 10 9 6 13 13 H 1.08999 * 109.47269 * 179.51041 * 12 10 9 14 14 O 1.42903 * 109.46459 * 299.50935 * 12 10 9 15 15 C 1.50696 * 109.47222 * 59.50600 * 12 10 9 16 16 H 1.07991 * 120.00427 * 0.02562 * 15 12 10 17 17 C 1.37879 * 119.99614 * 180.02562 * 15 12 10 18 18 N 1.31522 * 119.99827 * 180.02562 * 17 15 12 19 19 Si 1.86790 * 120.00424 * 0.02562 * 17 15 12 20 20 H 1.48503 * 109.47539 * 89.99825 * 19 17 15 21 21 H 1.48500 * 109.47547 * 209.99950 * 19 17 15 22 22 H 1.48509 * 109.47154 * 329.99776 * 19 17 15 23 23 H 1.07999 * 120.00256 * 179.97438 * 1 2 3 24 24 H 1.08004 * 119.99781 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99802 * 180.02562 * 2 1 3 26 26 H 1.08995 * 109.47593 * 179.36408 * 7 6 5 27 27 H 1.09002 * 109.47019 * 299.36006 * 7 6 5 28 28 H 1.08998 * 109.47327 * 59.36039 * 7 6 5 29 29 H 1.08992 * 109.47594 * 300.63583 * 8 6 5 30 30 H 1.09000 * 109.46995 * 60.64136 * 8 6 5 31 31 H 1.09007 * 109.46662 * 180.64134 * 8 6 5 32 32 H 0.96700 * 114.00311 * 60.00313 * 14 12 10 33 33 H 0.96999 * 120.00287 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3754 2.1484 -0.0563 5 8 3.0113 1.3460 -1.0864 6 6 4.2867 0.9636 -0.5545 7 6 5.2836 2.1101 -0.7349 8 6 4.7979 -0.2782 -1.2875 9 8 4.1357 0.6707 0.8448 10 6 2.9648 1.4168 1.2551 11 1 3.2176 2.4565 1.4627 12 6 2.2976 0.7656 2.4683 13 1 1.4259 1.3507 2.7612 14 8 1.8893 -0.5618 2.1318 15 6 3.2765 0.7151 3.6129 16 1 4.2744 1.1085 3.4879 17 6 2.8979 0.1667 4.8200 18 7 3.7520 0.1230 5.8192 19 14 1.1721 -0.5144 5.0362 20 1 1.1562 -1.9512 4.6612 21 1 0.7563 -0.3684 6.4543 22 1 0.2314 0.2351 4.1650 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 6.2489 1.8210 -0.3196 27 1 5.3960 2.3300 -1.7966 28 1 4.9160 2.9961 -0.2173 29 1 4.0847 -1.0929 -1.1632 30 1 4.9114 -0.0532 -2.3480 31 1 5.7622 -0.5733 -0.8734 32 1 2.6155 -1.1400 1.8610 33 1 3.4859 -0.2631 6.6682 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165714666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:11 Heat of formation + Delta-G solvation = -133.148451 kcal Electronic energy + Delta-G solvation = -17240.259118 eV Core-core repulsion = 14459.364404 eV Total energy + Delta-G solvation = -2780.894713 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.81813 -38.06633 -36.12255 -34.74746 -34.33208 -32.93094 -30.69675 -28.40116 -28.01867 -24.92539 -22.35916 -22.07620 -21.16855 -19.31746 -17.89955 -17.64170 -16.99565 -16.82936 -15.89817 -15.53094 -15.31163 -14.94107 -14.74623 -14.38363 -14.08307 -13.50424 -13.37894 -13.19517 -13.12545 -12.90279 -12.85414 -12.79398 -12.38649 -12.22383 -11.82680 -11.51658 -11.07525 -10.86501 -10.75788 -10.43899 -9.57837 -8.34188 -6.48566 1.41188 1.45615 1.48156 1.59939 2.37756 2.64723 2.96681 3.11485 3.53423 3.77764 3.88059 3.98515 4.04199 4.14800 4.28366 4.54809 4.57988 4.69035 4.76601 4.77853 4.80041 5.01371 5.13651 5.19328 5.26192 5.35233 5.43536 5.82797 5.99631 6.09312 6.27154 6.63441 7.03193 7.28312 8.80352 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.030969 B = 0.010898 C = 0.008922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.909982 B = 2568.653864 C = 3137.647411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C 0.085 3.915 4 H 0.120 0.880 5 O -0.381 6.381 6 C 0.230 3.770 7 C -0.166 4.166 8 C -0.147 4.147 9 O -0.373 6.373 10 C 0.044 3.956 11 H 0.075 0.925 12 C 0.212 3.788 13 H 0.077 0.923 14 O -0.561 6.561 15 C -0.551 4.551 16 H 0.035 0.965 17 C 0.028 3.972 18 N -0.939 5.939 19 Si 0.977 3.023 20 H -0.277 1.277 21 H -0.307 1.307 22 H -0.252 1.252 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.370 0.630 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.185 1.090 -14.310 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.139 4.139 3 C 0.028 3.972 4 H 0.138 0.862 5 O -0.303 6.303 6 C 0.154 3.846 7 C -0.224 4.224 8 C -0.205 4.205 9 O -0.294 6.294 10 C -0.014 4.014 11 H 0.093 0.907 12 C 0.155 3.845 13 H 0.095 0.905 14 O -0.368 6.368 15 C -0.589 4.589 16 H 0.053 0.947 17 C -0.172 4.172 18 N -0.579 5.579 19 Si 0.804 3.196 20 H -0.203 1.203 21 H -0.235 1.235 22 H -0.176 1.176 23 H 0.122 0.878 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.219 0.781 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.620 1.210 -14.095 14.602 hybrid contribution 0.327 -0.348 0.766 0.903 sum -3.294 0.862 -13.328 13.756 Atomic orbital electron populations 1.23604 0.95175 1.02152 1.02771 1.22653 0.96297 0.96850 0.98115 1.22931 0.91384 0.98087 0.84754 0.86221 1.88858 1.18177 1.89543 1.33681 1.23713 0.85483 0.95438 0.79993 1.22344 0.98896 0.97352 1.03762 1.22055 1.01912 0.95534 1.00974 1.89356 1.47252 1.69473 1.23347 1.24520 0.84554 0.96378 0.95944 0.90717 1.19651 0.93737 0.82123 0.89030 0.90532 1.86410 1.38851 1.23881 1.87662 1.21650 0.99479 1.40936 0.96814 0.94692 1.25855 1.01618 0.94683 0.95047 1.70085 1.37783 1.46024 1.03995 0.85241 0.79773 0.79506 0.75049 1.20291 1.23494 1.17631 0.87783 0.88173 0.87694 0.90527 0.89092 0.92889 0.92085 0.88993 0.90486 0.78102 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.63 14.20 67.78 0.96 -4.67 16 2 C -0.12 -3.78 5.98 25.65 0.15 -3.63 16 3 C 0.09 2.75 3.89 30.50 0.12 2.87 16 4 H 0.12 3.39 7.86 -2.39 -0.02 3.37 16 5 O -0.38 -12.15 10.56 -126.22 -1.33 -13.49 16 6 C 0.23 7.21 1.47 30.59 0.04 7.26 16 7 C -0.17 -4.48 9.19 71.98 0.66 -3.82 16 8 C -0.15 -3.81 9.24 71.98 0.66 -3.15 16 9 O -0.37 -14.75 9.95 -122.84 -1.22 -15.98 16 10 C 0.04 1.69 3.23 31.25 0.10 1.79 16 11 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 12 C 0.21 9.45 2.19 29.85 0.07 9.51 16 13 H 0.08 3.40 7.20 -2.39 -0.02 3.38 16 14 O -0.56 -23.36 7.28 -143.69 -1.05 -24.40 16 15 C -0.55 -30.74 9.05 25.60 0.23 -30.50 16 16 H 0.03 2.20 7.96 -2.92 -0.02 2.18 16 17 C 0.03 1.58 5.47 84.65 0.46 2.05 16 18 N -0.94 -58.26 13.96 21.45 0.30 -57.96 16 19 Si 0.98 46.70 26.18 68.60 1.80 48.49 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.31 -14.59 7.11 99.48 0.71 -13.89 16 22 H -0.25 -11.34 6.54 99.48 0.65 -10.68 16 23 H 0.10 2.70 8.06 -2.91 -0.02 2.68 16 24 H 0.10 2.53 7.88 -2.91 -0.02 2.51 16 25 H 0.11 3.39 6.99 -2.91 -0.02 3.37 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.37 14.90 8.03 -74.06 -0.59 14.31 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -64.73 271.85 2.40 -62.33 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.44 Total: 23.29 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 3.47 Total: -22.29 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.30 Total: -57.96 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -3.60 Total: -53.86 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.80 Total: 48.49 kcal Total: -64.73 2.40 -62.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165714666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.814 kcal (2) G-P(sol) polarization free energy of solvation -64.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds