Wall clock time and date at job start Mon Mar 30 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36673 * 126.51382 * 2 1 4 4 C 1.35289 * 107.06892 * 179.88034 * 3 2 1 5 5 N 1.33455 * 108.43174 * 0.38255 * 4 3 2 6 6 C 1.31818 * 109.24906 * 359.75923 * 5 4 3 7 7 C 1.47172 * 125.86270 * 179.97438 * 6 5 4 8 8 C 1.39611 * 120.64231 * 131.93086 * 7 6 5 9 9 C 1.37820 * 119.91791 * 179.74781 * 8 7 6 10 10 C 1.38857 * 121.30593 * 0.56048 * 9 8 7 11 11 C 1.36280 * 121.35248 * 359.69026 * 10 9 8 12 12 C 1.40896 * 119.95263 * 0.02945 * 11 10 9 13 13 C 1.40716 * 120.62419 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00464 * 151.45818 * 13 12 11 15 15 C 1.40077 * 119.99609 * 331.45979 * 13 12 11 16 16 N 1.30771 * 120.00497 * 349.19357 * 15 13 12 17 17 Si 1.86804 * 119.99829 * 169.19336 * 15 13 12 18 18 H 1.48500 * 109.47293 * 59.99800 * 17 15 13 19 19 H 1.48498 * 109.46888 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46949 * 299.99953 * 17 15 13 21 21 H 1.08993 * 109.47002 * 264.47720 * 1 2 3 22 22 H 1.08998 * 109.46867 * 144.47959 * 1 2 3 23 23 H 1.08997 * 109.46577 * 24.47889 * 1 2 3 24 24 H 1.07999 * 126.46497 * 359.97438 * 3 2 1 25 25 H 1.07997 * 125.78068 * 180.14818 * 4 3 2 26 26 H 1.08005 * 120.04155 * 359.97438 * 8 7 6 27 27 H 1.08000 * 119.34442 * 180.24996 * 9 8 7 28 28 H 1.08005 * 119.32351 * 179.71765 * 10 9 8 29 29 H 1.08001 * 120.02447 * 180.02562 * 11 10 9 30 30 H 0.96998 * 120.00025 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2782 1.0985 0.0000 4 6 3.5540 0.6481 0.0027 5 7 3.5304 -0.6862 -0.0041 6 6 2.2784 -1.0988 -0.0059 7 6 1.8328 -2.5014 -0.0135 8 6 0.8527 -2.9414 0.8781 9 6 0.4428 -4.2571 0.8546 10 6 0.9942 -5.1687 -0.0359 11 6 1.9576 -4.7973 -0.9254 12 6 2.4134 -3.4643 -0.9529 13 6 3.4078 -3.0655 -1.8650 14 1 3.4391 -2.0453 -2.2180 15 6 4.3573 -3.9918 -2.3153 16 7 4.4555 -5.1609 -1.7376 17 14 5.4833 -3.5571 -3.7410 18 1 6.2886 -2.3602 -3.3886 19 1 6.3897 -4.6993 -4.0219 20 1 4.6660 -3.2664 -4.9463 21 1 -0.3633 -0.0989 1.0228 22 1 -0.3633 -0.8364 -0.5971 23 1 -0.3632 0.9353 -0.4258 24 1 1.9621 2.1311 -0.0004 25 1 4.4410 1.2640 0.0057 26 1 0.4137 -2.2509 1.5831 27 1 -0.3189 -4.5866 1.5457 28 1 0.6523 -6.1932 -0.0236 29 1 2.3714 -5.5241 -1.6087 30 1 5.1132 -5.8021 -2.0491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000204876480.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:23 Heat of formation + Delta-G solvation = 78.978411 kcal Electronic energy + Delta-G solvation = -15195.135839 eV Core-core repulsion = 12763.041308 eV Total energy + Delta-G solvation = -2432.094532 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99938 -37.13494 -33.78540 -33.19693 -30.73202 -29.54994 -27.54487 -26.43019 -25.17565 -21.66288 -21.06995 -20.16167 -18.85667 -17.24952 -16.42805 -15.37361 -14.89239 -14.52726 -14.00056 -13.67179 -13.11456 -12.82787 -12.60780 -12.26855 -12.16343 -12.02022 -11.60000 -11.13027 -11.05983 -10.76545 -10.45072 -9.68417 -9.57426 -9.25411 -8.96631 -8.84856 -8.01353 -7.43098 -7.04207 -6.74814 -4.35499 2.36695 2.84121 3.05847 3.07637 3.12464 3.26418 3.54581 3.94245 4.15302 4.63918 5.14897 5.43479 5.48830 5.55794 5.69545 5.77646 6.09980 6.11310 6.34165 6.38381 6.66135 6.95211 7.04991 7.15306 7.26745 7.50522 7.53152 7.76207 7.91514 8.06433 8.13691 8.21265 8.59994 8.79515 8.90967 9.10446 10.12711 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.021091 B = 0.012098 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.285637 B = 2313.911956 C = 3396.305891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.470 5.470 3 C -0.096 4.096 4 C -0.033 4.033 5 N -0.476 5.476 6 C 0.310 3.690 7 C -0.174 4.174 8 C -0.060 4.060 9 C -0.256 4.256 10 C -0.089 4.089 11 C -0.165 4.165 12 C 0.146 3.854 13 C -0.411 4.411 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.785 5.785 17 Si 0.914 3.086 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.264 1.264 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.161 0.839 25 H 0.157 0.843 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.022 6.080 0.106 7.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.153 5.153 3 C -0.229 4.229 4 C -0.184 4.184 5 N -0.192 5.192 6 C 0.052 3.948 7 C -0.178 4.178 8 C -0.080 4.080 9 C -0.275 4.275 10 C -0.108 4.108 11 C -0.184 4.184 12 C 0.141 3.859 13 C -0.440 4.440 14 H 0.100 0.900 15 C -0.145 4.145 16 N -0.409 5.409 17 Si 0.739 3.261 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.189 1.189 21 H 0.085 0.915 22 H 0.105 0.895 23 H 0.093 0.907 24 H 0.178 0.822 25 H 0.175 0.825 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.141 0.859 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.317 5.403 0.096 6.916 hybrid contribution -0.155 0.867 -0.432 0.981 sum -4.472 6.269 -0.336 7.709 Atomic orbital electron populations 1.21866 0.77880 1.03693 1.02804 1.45754 1.06837 1.06865 1.55862 1.22443 0.91850 0.91857 1.16747 1.22253 0.95556 0.92324 1.08262 1.70729 1.18537 1.09949 1.19983 1.21612 0.84206 0.88102 1.00840 1.18386 1.07344 0.87940 1.04097 1.20444 0.96038 0.95211 0.96317 1.20036 1.07379 0.93990 1.06143 1.20406 0.96979 0.97101 0.96320 1.21052 0.98509 0.97140 1.01725 1.18482 0.89203 0.90129 0.88048 1.19509 1.08082 0.97086 1.19273 0.90047 1.26003 0.97808 0.94043 0.96687 1.69768 1.29900 1.06120 1.35120 0.86245 0.79712 0.79264 0.80918 1.18537 1.20226 1.18861 0.91476 0.89495 0.90670 0.82209 0.82545 0.89706 0.89485 0.89486 0.85934 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.04 59.85 0.60 1.76 16 2 N -0.47 -9.03 3.19 -121.70 -0.39 -9.42 16 3 C -0.10 -1.70 11.58 -16.44 -0.19 -1.89 16 4 C -0.03 -0.67 11.84 -17.90 -0.21 -0.88 16 5 N -0.48 -11.76 10.39 -11.26 -0.12 -11.88 16 6 C 0.31 7.36 6.62 -154.42 -1.02 6.34 16 7 C -0.17 -4.33 5.71 -102.42 -0.59 -4.92 16 8 C -0.06 -1.35 8.96 -39.22 -0.35 -1.70 16 9 C -0.26 -5.64 9.98 -39.51 -0.39 -6.03 16 10 C -0.09 -2.06 9.91 -40.06 -0.40 -2.45 16 11 C -0.16 -4.23 8.62 -39.28 -0.34 -4.57 16 12 C 0.15 3.93 5.71 -104.62 -0.60 3.33 16 13 C -0.41 -11.15 8.16 -37.96 -0.31 -11.46 16 14 H 0.08 2.25 7.16 -52.49 -0.38 1.88 16 15 C 0.07 1.88 5.26 -17.31 -0.09 1.78 16 16 N -0.78 -20.24 10.84 55.55 0.60 -19.64 16 17 Si 0.91 19.31 29.57 -169.99 -5.03 14.29 16 18 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 21 H 0.07 0.86 8.01 -51.93 -0.42 0.44 16 22 H 0.09 1.31 7.83 -51.93 -0.41 0.91 16 23 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 24 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 25 H 0.16 2.63 8.06 -52.49 -0.42 2.21 16 26 H 0.08 1.69 7.59 -52.48 -0.40 1.29 16 27 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 29 H 0.12 3.20 6.23 -52.49 -0.33 2.87 16 30 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 LS Contribution 263.18 15.07 3.97 3.97 Total: -1.00 -30.20 263.18 -8.02 -38.22 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.17 Total: 5.15 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -3.89 Total: -20.69 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.10 Total: -40.93 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.20 -8.02 -38.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204876480.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.199 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds