Wall clock time and date at job start Mon Mar 30 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36673 * 126.51382 * 2 1 4 4 C 1.35289 * 107.06892 * 179.88034 * 3 2 1 5 5 N 1.33455 * 108.43174 * 0.38255 * 4 3 2 6 6 C 1.31818 * 109.24906 * 359.75923 * 5 4 3 7 7 C 1.47172 * 125.86270 * 179.97438 * 6 5 4 8 8 C 1.39611 * 120.64231 * 131.93086 * 7 6 5 9 9 C 1.37820 * 119.91791 * 179.74781 * 8 7 6 10 10 C 1.38857 * 121.30593 * 0.56048 * 9 8 7 11 11 C 1.36280 * 121.35248 * 359.69026 * 10 9 8 12 12 C 1.40896 * 119.95263 * 0.02945 * 11 10 9 13 13 C 1.40716 * 120.62419 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00464 * 151.45818 * 13 12 11 15 15 C 1.40077 * 119.99609 * 331.45979 * 13 12 11 16 16 N 1.30771 * 120.00497 * 349.19357 * 15 13 12 17 17 Si 1.86804 * 119.99829 * 169.19336 * 15 13 12 18 18 H 1.48500 * 109.47293 * 59.99800 * 17 15 13 19 19 H 1.48498 * 109.46888 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46949 * 299.99953 * 17 15 13 21 21 H 1.08993 * 109.47002 * 264.47720 * 1 2 3 22 22 H 1.08998 * 109.46867 * 144.47959 * 1 2 3 23 23 H 1.08997 * 109.46577 * 24.47889 * 1 2 3 24 24 H 1.07999 * 126.46497 * 359.97438 * 3 2 1 25 25 H 1.07997 * 125.78068 * 180.14818 * 4 3 2 26 26 H 1.08005 * 120.04155 * 359.97438 * 8 7 6 27 27 H 1.08000 * 119.34442 * 180.24996 * 9 8 7 28 28 H 1.08005 * 119.32351 * 179.71765 * 10 9 8 29 29 H 1.08001 * 120.02447 * 180.02562 * 11 10 9 30 30 H 0.96998 * 120.00025 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2782 1.0985 0.0000 4 6 3.5540 0.6481 0.0027 5 7 3.5304 -0.6862 -0.0041 6 6 2.2784 -1.0988 -0.0059 7 6 1.8328 -2.5014 -0.0135 8 6 0.8527 -2.9414 0.8781 9 6 0.4428 -4.2571 0.8546 10 6 0.9942 -5.1687 -0.0359 11 6 1.9576 -4.7973 -0.9254 12 6 2.4134 -3.4643 -0.9529 13 6 3.4078 -3.0655 -1.8650 14 1 3.4391 -2.0453 -2.2180 15 6 4.3573 -3.9918 -2.3153 16 7 4.4555 -5.1609 -1.7376 17 14 5.4833 -3.5571 -3.7410 18 1 6.2886 -2.3602 -3.3886 19 1 6.3897 -4.6993 -4.0219 20 1 4.6660 -3.2664 -4.9463 21 1 -0.3633 -0.0989 1.0228 22 1 -0.3633 -0.8364 -0.5971 23 1 -0.3632 0.9353 -0.4258 24 1 1.9621 2.1311 -0.0004 25 1 4.4410 1.2640 0.0057 26 1 0.4137 -2.2509 1.5831 27 1 -0.3189 -4.5866 1.5457 28 1 0.6523 -6.1932 -0.0236 29 1 2.3714 -5.5241 -1.6087 30 1 5.1132 -5.8021 -2.0491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000204876480.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:23 Heat of formation + Delta-G solvation = 62.023008 kcal Electronic energy + Delta-G solvation = -15195.871081 eV Core-core repulsion = 12763.041308 eV Total energy + Delta-G solvation = -2432.829773 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.54512 -38.96409 -35.62252 -34.68303 -32.47326 -31.41383 -29.17336 -27.80188 -26.99927 -23.39677 -22.85239 -21.71624 -20.52399 -19.12703 -17.95582 -17.16487 -16.35887 -16.20198 -15.64330 -15.32728 -14.72632 -14.39916 -14.29962 -13.75072 -13.62081 -13.44138 -13.35643 -12.91749 -12.79510 -12.58182 -12.15589 -11.49324 -11.41808 -11.11535 -10.58623 -10.38851 -9.71301 -9.29635 -8.79107 -8.54513 -6.30251 0.62214 1.05738 1.33889 1.45298 1.46470 1.53244 2.13931 2.19558 2.50178 2.76668 3.66376 3.98187 4.10398 4.21983 4.36264 4.46991 4.58287 4.67207 4.71244 4.82384 4.97902 5.13052 5.27803 5.33879 5.56230 5.66015 5.91425 6.05508 6.13525 6.20044 6.33824 6.49526 6.70706 6.88882 7.01751 7.52263 8.29501 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.021091 B = 0.012098 C = 0.008242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.285637 B = 2313.911956 C = 3396.305891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.465 5.465 3 C -0.061 4.061 4 C -0.071 4.071 5 N -0.524 5.524 6 C 0.267 3.733 7 C -0.179 4.179 8 C -0.064 4.064 9 C -0.247 4.247 10 C -0.093 4.093 11 C -0.190 4.190 12 C 0.111 3.889 13 C -0.444 4.444 14 H 0.061 0.939 15 C 0.034 3.966 16 N -0.817 5.817 17 Si 0.978 3.022 18 H -0.270 1.270 19 H -0.259 1.259 20 H -0.257 1.257 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.115 0.885 24 H 0.215 0.785 25 H 0.179 0.821 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.563 7.734 0.722 10.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.147 5.147 3 C -0.194 4.194 4 C -0.220 4.220 5 N -0.242 5.242 6 C 0.008 3.992 7 C -0.183 4.183 8 C -0.084 4.084 9 C -0.266 4.266 10 C -0.112 4.112 11 C -0.210 4.210 12 C 0.107 3.893 13 C -0.473 4.473 14 H 0.079 0.921 15 C -0.181 4.181 16 N -0.442 5.442 17 Si 0.799 3.201 18 H -0.195 1.195 19 H -0.183 1.183 20 H -0.181 1.181 21 H 0.106 0.894 22 H 0.092 0.908 23 H 0.134 0.866 24 H 0.231 0.769 25 H 0.196 0.804 26 H 0.132 0.868 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.900 7.042 0.720 9.215 hybrid contribution 0.173 0.498 -0.477 0.711 sum -5.726 7.540 0.243 9.471 Atomic orbital electron populations 1.22221 0.74950 1.05432 1.04314 1.45958 1.08640 1.05975 1.54120 1.23234 0.90648 0.93418 1.12122 1.22786 0.97998 0.91137 1.10082 1.70572 1.20159 1.12729 1.20717 1.21371 0.84918 0.88711 1.04180 1.18732 1.07155 0.88861 1.03560 1.20769 0.95475 0.96047 0.96091 1.20486 1.07044 0.93540 1.05507 1.20729 0.96038 0.98779 0.95627 1.21021 1.00131 0.96796 1.03035 1.18877 0.90028 0.91356 0.89068 1.19469 1.09891 0.96584 1.21391 0.92088 1.26729 0.98773 0.93851 0.98766 1.69806 1.31037 1.06972 1.36430 0.85310 0.77885 0.78960 0.77915 1.19512 1.18329 1.18135 0.89400 0.90776 0.86636 0.76858 0.80381 0.86832 0.85863 0.86865 0.87507 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.82 10.04 127.77 1.28 3.10 16 2 N -0.46 -16.77 3.19 -538.95 -1.72 -18.49 16 3 C -0.06 -1.93 11.58 83.26 0.96 -0.97 16 4 C -0.07 -2.77 11.84 83.77 0.99 -1.77 16 5 N -0.52 -26.37 10.39 -189.55 -1.97 -28.34 16 6 C 0.27 12.67 6.62 136.14 0.90 13.58 16 7 C -0.18 -9.06 5.71 -18.44 -0.11 -9.17 16 8 C -0.06 -2.79 8.96 22.50 0.20 -2.59 16 9 C -0.25 -10.34 9.98 22.32 0.22 -10.12 16 10 C -0.09 -4.24 9.91 21.96 0.22 -4.03 16 11 C -0.19 -10.09 8.62 22.46 0.19 -9.90 16 12 C 0.11 6.21 5.71 -19.86 -0.11 6.10 16 13 C -0.44 -25.41 8.16 23.32 0.19 -25.22 16 14 H 0.06 3.60 7.16 -2.91 -0.02 3.58 16 15 C 0.03 1.82 5.26 85.30 0.45 2.27 16 16 N -0.82 -43.98 10.84 21.85 0.24 -43.74 16 17 Si 0.98 41.06 29.57 68.60 2.03 43.08 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 21 H 0.09 1.88 8.01 -2.39 -0.02 1.86 16 22 H 0.07 2.08 7.83 -2.39 -0.02 2.06 16 23 H 0.12 1.98 8.13 -2.39 -0.02 1.96 16 24 H 0.21 4.36 8.06 -2.91 -0.02 4.33 16 25 H 0.18 5.80 8.06 -2.91 -0.02 5.78 16 26 H 0.11 4.20 7.59 -2.91 -0.02 4.17 16 27 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 28 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 29 H 0.11 5.88 6.23 -2.91 -0.02 5.86 16 30 H 0.29 14.09 8.29 -92.71 -0.77 13.32 16 Total: -1.00 -69.52 263.18 5.11 -64.41 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 1.14 Total: 21.79 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 5.40 Total: -38.71 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -3.45 Total: -90.57 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -69.52 5.11 -64.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204876480.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.428 kcal (2) G-P(sol) polarization free energy of solvation -69.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds