Wall clock time and date at job start Mon Mar 30 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46871 * 2 1 4 4 F 1.39901 * 109.46996 * 240.00153 * 2 1 3 5 5 C 1.53004 * 109.46942 * 119.99962 * 2 1 3 6 6 C 1.52991 * 109.47090 * 60.00219 * 5 2 1 7 7 N 1.46500 * 109.46984 * 179.97438 * 6 5 2 8 8 N 1.29004 * 126.59956 * 269.96891 * 7 6 5 9 9 N 1.28579 * 109.45409 * 180.02562 * 8 7 6 10 10 N 1.28799 * 110.10770 * 359.76432 * 9 8 7 11 11 C 1.33296 * 107.72045 * 0.38186 * 10 9 8 12 12 C 1.40548 * 127.03987 * 179.89621 * 11 10 9 13 13 H 1.08002 * 120.00161 * 179.68768 * 12 11 10 14 14 C 1.40261 * 119.99908 * 359.40411 * 12 11 10 15 15 N 1.30644 * 120.00231 * 0.28066 * 14 12 11 16 16 Si 1.86803 * 119.99815 * 180.27886 * 14 12 11 17 17 H 1.48506 * 109.47253 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 120.00097 * 16 14 12 19 19 H 1.48506 * 109.46902 * 240.00348 * 16 14 12 20 20 H 1.09001 * 109.47431 * 299.99970 * 1 2 3 21 21 H 1.08998 * 109.47029 * 60.00078 * 1 2 3 22 22 H 1.08999 * 109.47144 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46978 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.47230 * 299.99799 * 3 2 1 25 25 H 1.09003 * 109.46858 * 60.00313 * 3 2 1 26 26 H 1.08997 * 109.47067 * 299.99509 * 5 2 1 27 27 H 1.08999 * 109.46591 * 180.02562 * 5 2 1 28 28 H 1.09006 * 109.47544 * 59.99875 * 6 5 2 29 29 H 1.08999 * 109.47435 * 299.99521 * 6 5 2 30 30 H 0.96996 * 120.00314 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0399 -0.7213 1.2493 6 6 1.5300 -2.1637 1.2492 7 7 2.0188 -2.8544 2.4451 8 7 3.1206 -3.5165 2.5546 9 7 3.2210 -3.9867 3.7471 10 7 2.1957 -3.6424 4.4466 11 6 1.3931 -2.9223 3.6629 12 6 0.1607 -2.3456 4.0149 13 1 -0.3970 -1.7763 3.2859 14 6 -0.3477 -2.5142 5.3112 15 7 0.3268 -3.2028 6.1930 16 14 -1.9894 -1.7542 5.7767 17 1 -2.5485 -1.0289 4.6076 18 1 -2.9306 -2.8250 6.1920 19 1 -1.7937 -0.8036 6.9008 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4426 0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6767 -0.2074 2.1392 27 1 3.1299 -0.7208 1.2495 28 1 1.8933 -2.6776 0.3592 29 1 0.4400 -2.1638 1.2493 30 1 -0.0246 -3.3191 7.0896 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214012582.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:08 Heat of formation + Delta-G solvation = 34.411518 kcal Electronic energy + Delta-G solvation = -16045.222915 eV Core-core repulsion = 13212.719344 eV Total energy + Delta-G solvation = -2832.503571 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.59237 -41.60033 -36.10370 -33.95624 -33.33541 -30.39308 -29.18862 -27.56079 -26.29235 -24.03201 -21.57111 -20.57257 -19.98476 -17.55636 -16.38663 -15.84579 -15.53369 -15.18337 -14.60123 -14.54083 -14.00796 -13.53634 -12.98823 -12.45887 -12.32595 -12.06247 -12.01896 -11.95672 -11.51680 -11.43017 -11.05274 -10.90136 -10.68764 -10.55449 -10.26636 -10.02700 -9.76353 -9.01091 -8.79267 -8.27054 -6.81031 -4.87719 2.80361 2.97407 3.02507 3.24018 3.62756 3.84856 4.21542 4.56692 4.60367 4.68637 4.80735 5.09468 5.19588 5.39540 5.48669 5.58109 5.62820 5.75840 5.88941 5.93500 6.07241 6.24264 6.32529 6.61785 6.84466 7.04877 7.73507 7.78966 8.05347 8.53508 8.58978 10.12889 10.81756 Molecular weight = 228.11amu Principal moments of inertia in cm(-1) A = 0.024045 B = 0.009433 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.184984 B = 2967.500766 C = 3884.435569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.119 3.881 3 C -0.170 4.170 4 F -0.211 7.211 5 C -0.155 4.155 6 C 0.146 3.854 7 N -0.396 5.396 8 N -0.194 5.194 9 N -0.106 5.106 10 N -0.352 5.352 11 C 0.323 3.677 12 C -0.441 4.441 13 H 0.090 0.910 14 C 0.078 3.922 15 N -0.730 5.730 16 Si 0.921 3.079 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.271 1.271 20 H 0.079 0.921 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 9.546 -8.568 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.100 3.900 3 C -0.228 4.228 4 F -0.192 7.192 5 C -0.194 4.194 6 C 0.021 3.979 7 N -0.201 5.201 8 N -0.181 5.181 9 N -0.101 5.101 10 N -0.211 5.211 11 C 0.073 3.927 12 C -0.484 4.484 13 H 0.108 0.892 14 C -0.149 4.149 15 N -0.354 5.354 16 Si 0.745 3.255 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.196 1.196 20 H 0.098 0.902 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.533 8.635 -8.117 12.366 hybrid contribution -1.530 0.900 -0.161 1.782 sum -5.063 9.534 -8.278 13.604 Atomic orbital electron populations 1.22462 0.93452 1.04019 1.03560 1.20867 0.94828 0.92046 0.82243 1.22350 1.02475 0.94590 1.03389 1.92845 1.90373 1.82940 1.53016 1.22558 1.02790 0.96301 0.97755 1.21362 0.99562 0.91030 0.85909 1.48189 1.16854 1.43206 1.11834 1.78141 1.06405 1.15728 1.17817 1.77895 1.18815 1.16885 0.96537 1.76184 1.01292 1.21021 1.22605 1.22683 0.95653 0.94603 0.79774 1.18391 1.00541 1.31514 0.97911 0.89172 1.25872 0.99189 0.94181 0.95650 1.69918 1.35450 1.25889 1.04140 0.86049 0.80541 0.79439 0.79514 1.18297 1.19562 1.19572 0.90183 0.91547 0.90871 0.91428 0.91479 0.90514 0.89018 0.90235 0.89536 0.88945 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 8.58 37.16 0.32 -1.61 16 2 C 0.12 1.50 1.37 -90.62 -0.12 1.38 16 3 C -0.17 -1.76 8.93 37.16 0.33 -1.43 16 4 F -0.21 -3.07 16.29 2.25 0.04 -3.03 16 5 C -0.15 -2.42 4.86 -26.73 -0.13 -2.55 16 6 C 0.15 2.67 5.75 -4.05 -0.02 2.65 16 7 N -0.40 -9.67 3.42 -60.33 -0.21 -9.87 16 8 N -0.19 -5.20 13.25 60.35 0.80 -4.40 16 9 N -0.11 -3.11 13.38 60.35 0.81 -2.30 16 10 N -0.35 -10.59 10.71 31.20 0.33 -10.25 16 11 C 0.32 8.80 7.63 -155.56 -1.19 7.61 16 12 C -0.44 -10.98 9.06 -37.95 -0.34 -11.33 16 13 H 0.09 1.97 7.29 -52.49 -0.38 1.59 16 14 C 0.08 1.89 5.50 -17.30 -0.10 1.80 16 15 N -0.73 -19.26 11.98 55.56 0.67 -18.60 16 16 Si 0.92 17.32 29.56 -169.99 -5.03 12.29 16 17 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 18 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 20 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 21 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.82 6.43 -51.93 -0.33 0.49 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.09 1.52 7.80 -51.93 -0.41 1.12 16 29 H 0.09 1.54 5.77 -51.93 -0.30 1.24 16 30 H 0.28 6.66 8.29 -40.82 -0.34 6.32 16 LS Contribution 264.18 15.07 3.98 3.98 Total: -1.00 -31.76 264.18 -3.37 -35.13 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -3.51 Total: 0.54 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.25 Total: -3.49 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 2.40 Total: -45.42 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.76 -3.37 -35.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214012582.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.545 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds