Wall clock time and date at job start Mon Mar 30 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46871 * 2 1 4 4 F 1.39901 * 109.46996 * 240.00153 * 2 1 3 5 5 C 1.53004 * 109.46942 * 119.99962 * 2 1 3 6 6 C 1.52991 * 109.47090 * 60.00219 * 5 2 1 7 7 N 1.46500 * 109.46984 * 179.97438 * 6 5 2 8 8 N 1.29004 * 126.59956 * 269.96891 * 7 6 5 9 9 N 1.28579 * 109.45409 * 180.02562 * 8 7 6 10 10 N 1.28799 * 110.10770 * 359.76432 * 9 8 7 11 11 C 1.33296 * 107.72045 * 0.38186 * 10 9 8 12 12 C 1.40548 * 127.03987 * 179.89621 * 11 10 9 13 13 H 1.08002 * 120.00161 * 179.68768 * 12 11 10 14 14 C 1.40261 * 119.99908 * 359.40411 * 12 11 10 15 15 N 1.30644 * 120.00231 * 0.28066 * 14 12 11 16 16 Si 1.86803 * 119.99815 * 180.27886 * 14 12 11 17 17 H 1.48506 * 109.47253 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 120.00097 * 16 14 12 19 19 H 1.48506 * 109.46902 * 240.00348 * 16 14 12 20 20 H 1.09001 * 109.47431 * 299.99970 * 1 2 3 21 21 H 1.08998 * 109.47029 * 60.00078 * 1 2 3 22 22 H 1.08999 * 109.47144 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46978 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.47230 * 299.99799 * 3 2 1 25 25 H 1.09003 * 109.46858 * 60.00313 * 3 2 1 26 26 H 1.08997 * 109.47067 * 299.99509 * 5 2 1 27 27 H 1.08999 * 109.46591 * 180.02562 * 5 2 1 28 28 H 1.09006 * 109.47544 * 59.99875 * 6 5 2 29 29 H 1.08999 * 109.47435 * 299.99521 * 6 5 2 30 30 H 0.96996 * 120.00314 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0399 -0.7213 1.2493 6 6 1.5300 -2.1637 1.2492 7 7 2.0188 -2.8544 2.4451 8 7 3.1206 -3.5165 2.5546 9 7 3.2210 -3.9867 3.7471 10 7 2.1957 -3.6424 4.4466 11 6 1.3931 -2.9223 3.6629 12 6 0.1607 -2.3456 4.0149 13 1 -0.3970 -1.7763 3.2859 14 6 -0.3477 -2.5142 5.3112 15 7 0.3268 -3.2028 6.1930 16 14 -1.9894 -1.7542 5.7767 17 1 -2.5485 -1.0289 4.6076 18 1 -2.9306 -2.8250 6.1920 19 1 -1.7937 -0.8036 6.9008 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4426 0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6767 -0.2074 2.1392 27 1 3.1299 -0.7208 1.2495 28 1 1.8933 -2.6776 0.3592 29 1 0.4400 -2.1638 1.2493 30 1 -0.0246 -3.3191 7.0896 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214012582.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:08 Heat of formation + Delta-G solvation = 13.628982 kcal Electronic energy + Delta-G solvation = -16046.124113 eV Core-core repulsion = 13212.719344 eV Total energy + Delta-G solvation = -2833.404769 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.67093 -43.63748 -37.42641 -35.84325 -34.90609 -32.41641 -30.65878 -28.41442 -28.21150 -25.53628 -23.60189 -22.34375 -21.12571 -19.46145 -18.04634 -17.20706 -16.86739 -16.69329 -16.11835 -15.89676 -15.35341 -15.23593 -14.07749 -13.86512 -13.58470 -13.23452 -13.17932 -13.01199 -12.96715 -12.90532 -12.79141 -12.32479 -12.05696 -11.93177 -11.79602 -11.58642 -11.54598 -10.89846 -10.88174 -10.29534 -8.63885 -6.85892 1.03375 1.45649 1.56138 1.64858 1.94930 2.19275 2.24714 3.17116 3.53693 3.57674 3.61550 3.75037 3.90738 4.17567 4.31632 4.49051 4.69671 4.72850 4.82618 4.84642 4.85944 5.01481 5.15959 5.17172 5.27509 5.30969 5.74860 5.81321 6.13496 6.62612 6.67082 8.33627 8.71986 Molecular weight = 228.11amu Principal moments of inertia in cm(-1) A = 0.024045 B = 0.009433 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.184984 B = 2967.500766 C = 3884.435569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.120 3.880 3 C -0.168 4.168 4 F -0.223 7.223 5 C -0.146 4.146 6 C 0.136 3.864 7 N -0.391 5.391 8 N -0.194 5.194 9 N -0.138 5.138 10 N -0.397 5.397 11 C 0.297 3.703 12 C -0.449 4.449 13 H 0.121 0.879 14 C 0.029 3.971 15 N -0.780 5.780 16 Si 1.008 2.992 17 H -0.234 1.234 18 H -0.270 1.270 19 H -0.267 1.267 20 H 0.091 0.909 21 H 0.085 0.915 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 11.672 -9.469 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.102 3.898 3 C -0.226 4.226 4 F -0.204 7.204 5 C -0.185 4.185 6 C 0.014 3.986 7 N -0.197 5.197 8 N -0.182 5.182 9 N -0.133 5.133 10 N -0.257 5.257 11 C 0.049 3.951 12 C -0.491 4.491 13 H 0.139 0.861 14 C -0.194 4.194 15 N -0.404 5.404 16 Si 0.826 3.174 17 H -0.156 1.156 18 H -0.194 1.194 19 H -0.192 1.192 20 H 0.110 0.890 21 H 0.104 0.896 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.132 0.868 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.021 10.769 -9.064 15.309 hybrid contribution -0.731 0.233 0.072 0.771 sum -6.752 11.002 -8.992 15.732 Atomic orbital electron populations 1.22488 0.91587 1.04190 1.05164 1.20992 0.96199 0.92581 0.80065 1.22356 1.02181 0.93058 1.04982 1.92827 1.90686 1.83385 1.53523 1.22484 1.01627 0.94780 0.99655 1.21841 1.00857 0.92150 0.83790 1.48480 1.15743 1.42743 1.12757 1.77970 1.07477 1.15518 1.17216 1.77822 1.19635 1.18491 0.97348 1.76065 1.02315 1.23008 1.24345 1.23125 0.96470 0.95063 0.80472 1.19060 0.99786 1.31036 0.99207 0.86081 1.27151 1.03416 0.93891 0.94922 1.70049 1.38045 1.27250 1.05053 0.84769 0.74380 0.78367 0.79865 1.15608 1.19444 1.19209 0.89011 0.89595 0.91399 0.92044 0.89615 0.89207 0.89167 0.92073 0.89074 0.86847 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.58 71.98 0.62 -2.61 16 2 C 0.12 2.75 1.37 -10.79 -0.01 2.73 16 3 C -0.17 -3.01 8.93 71.98 0.64 -2.37 16 4 F -0.22 -6.09 16.29 44.97 0.73 -5.36 16 5 C -0.15 -4.39 4.86 30.59 0.15 -4.24 16 6 C 0.14 4.82 5.75 86.38 0.50 5.31 16 7 N -0.39 -19.17 3.42 -344.80 -1.18 -20.35 16 8 N -0.19 -10.63 13.25 37.02 0.49 -10.14 16 9 N -0.14 -8.32 13.38 37.02 0.50 -7.83 16 10 N -0.40 -24.60 10.71 -55.20 -0.59 -25.19 16 11 C 0.30 16.32 7.63 133.79 1.02 17.34 16 12 C -0.45 -21.77 9.06 23.33 0.21 -21.56 16 13 H 0.12 4.92 7.29 -2.91 -0.02 4.90 16 14 C 0.03 1.37 5.50 85.36 0.47 1.84 16 15 N -0.78 -41.43 11.98 21.88 0.26 -41.17 16 16 Si 1.01 33.50 29.56 68.60 2.03 35.53 16 17 H -0.23 -6.77 7.11 99.48 0.71 -6.07 16 18 H -0.27 -8.87 7.11 99.48 0.71 -8.17 16 19 H -0.27 -8.70 7.11 99.48 0.71 -7.99 16 20 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 22 H 0.07 1.30 6.43 -2.39 -0.02 1.29 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 3.14 7.80 -2.38 -0.02 3.12 16 29 H 0.11 3.53 5.77 -2.39 -0.01 3.52 16 30 H 0.29 13.79 8.29 -92.71 -0.77 13.02 16 Total: -1.00 -70.26 264.18 6.98 -63.28 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.15 Total: 14.78 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 3.59 Total: -3.55 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -0.52 Total: -104.68 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.73 Total: -5.36 kcal Atomic # 14 Polarization: 33.50 SS G_CDS: 2.03 Total: 35.53 kcal Total: -70.26 6.98 -63.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214012582.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.912 kcal (2) G-P(sol) polarization free energy of solvation -70.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds