Wall clock time and date at job start Mon Mar 30 2020 02:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38114 * 120.03846 * 2 1 4 4 C 1.38281 * 120.07572 * 180.02562 * 3 2 1 5 5 C 1.38334 * 120.15534 * 359.97438 * 4 3 2 6 6 C 1.38069 * 120.07090 * 0.02562 * 5 4 3 7 7 C 1.38917 * 120.03967 * 179.73195 * 2 1 3 8 8 N 1.39861 * 120.07574 * 359.97438 * 7 2 1 9 9 N 1.40029 * 126.23129 * 48.45511 * 8 7 2 10 10 C 1.31333 * 109.12244 * 180.02562 * 9 8 7 11 11 C 1.38647 * 109.14347 * 0.02562 * 10 9 8 12 12 C 1.37794 * 126.23264 * 228.15858 * 8 7 2 13 13 C 1.40087 * 126.67682 * 359.95603 * 12 8 7 14 14 H 1.07999 * 120.00579 * 16.78648 * 13 12 8 15 15 C 1.40223 * 119.99679 * 196.79094 * 13 12 8 16 16 N 1.30740 * 120.00010 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99977 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47607 * 89.99725 * 17 15 13 19 19 H 1.48499 * 109.47287 * 209.99624 * 17 15 13 20 20 H 1.48503 * 109.47095 * 329.99472 * 17 15 13 21 21 H 1.08998 * 109.47312 * 95.05366 * 1 2 3 22 22 H 1.09002 * 109.46956 * 335.05142 * 1 2 3 23 23 H 1.08999 * 109.47203 * 215.05413 * 1 2 3 24 24 H 1.08000 * 119.96227 * 0.03192 * 3 2 1 25 25 H 1.07997 * 119.92351 * 180.02562 * 4 3 2 26 26 H 1.07995 * 119.96535 * 180.02562 * 5 4 3 27 27 H 1.08000 * 120.03399 * 179.97438 * 6 5 4 28 28 H 1.07999 * 125.43028 * 179.97438 * 10 9 8 29 29 H 1.07995 * 126.21663 * 180.02562 * 11 10 9 30 30 H 0.97005 * 120.00112 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1956 0.0000 4 6 3.5812 1.1965 -0.0005 5 6 4.2769 0.0009 -0.0005 6 6 3.5920 -1.1980 -0.0005 7 6 2.2024 -1.2026 0.0056 8 7 1.5055 -2.4152 0.0118 9 7 0.4433 -2.7637 -0.8314 10 6 0.0398 -3.9780 -0.5358 11 6 0.8118 -4.4731 0.5040 12 6 1.7429 -3.4867 0.8451 13 6 2.7234 -3.5702 1.8421 14 1 3.2016 -2.6728 2.2058 15 6 3.0841 -4.8192 2.3678 16 7 2.5049 -5.9056 1.9277 17 14 4.3910 -4.9306 3.6977 18 1 3.7484 -4.8321 5.0328 19 1 5.1021 -6.2294 3.5854 20 1 5.3616 -3.8189 3.5323 21 1 -0.3634 -0.0905 -1.0236 22 1 -0.3633 0.9318 0.4335 23 1 -0.3633 -0.8412 0.5902 24 1 1.6584 2.1310 0.0005 25 1 4.1193 2.1329 -0.0001 26 1 5.3568 0.0052 -0.0005 27 1 4.1358 -2.1311 -0.0010 28 1 -0.7655 -4.5064 -1.0242 29 1 0.7156 -5.4459 0.9631 30 1 2.7541 -6.7695 2.2917 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214028643.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:13 Heat of formation + Delta-G solvation = 87.279716 kcal Electronic energy + Delta-G solvation = -15228.529357 eV Core-core repulsion = 12796.794797 eV Total energy + Delta-G solvation = -2431.734560 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.67619 -38.02552 -33.77526 -32.49625 -31.88690 -29.06516 -27.97791 -26.16064 -25.15678 -22.31816 -21.13463 -19.62597 -19.11692 -17.40669 -15.87372 -15.35886 -14.93187 -14.57704 -13.82302 -13.44457 -12.94274 -12.64284 -12.51633 -12.10491 -11.89957 -11.78680 -11.64782 -11.38802 -11.30663 -10.83043 -10.61378 -10.50859 -9.97328 -9.50109 -8.97748 -8.62019 -8.24701 -7.58924 -6.86509 -6.73109 -4.55993 1.78001 1.87670 2.89477 3.02422 3.06155 3.52100 3.79868 4.05257 4.29455 4.43788 5.22840 5.31995 5.38626 5.52698 5.72975 5.95669 6.07742 6.21150 6.28821 6.34857 6.43055 6.71805 6.86744 6.96382 7.00176 7.06207 7.27695 7.33550 7.53566 7.79367 7.97448 8.38260 8.60644 8.70540 9.10987 9.49217 10.15530 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.024313 B = 0.010759 C = 0.008022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.383923 B = 2601.934983 C = 3489.775199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.099 4.099 3 C -0.113 4.113 4 C -0.144 4.144 5 C -0.114 4.114 6 C -0.124 4.124 7 C 0.205 3.795 8 N -0.385 5.385 9 N -0.387 5.387 10 C 0.050 3.950 11 C -0.353 4.353 12 C 0.260 3.740 13 C -0.446 4.446 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.782 5.782 17 Si 0.922 3.078 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.261 1.261 21 H 0.069 0.931 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 7.011 0.025 7.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 C -0.131 4.131 4 C -0.163 4.163 5 C -0.133 4.133 6 C -0.145 4.145 7 C 0.111 3.889 8 N -0.166 5.166 9 N -0.209 5.209 10 C -0.131 4.131 11 C -0.384 4.384 12 C 0.145 3.855 13 C -0.482 4.482 14 H 0.097 0.903 15 C -0.142 4.142 16 N -0.407 5.407 17 Si 0.746 3.254 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.185 1.185 21 H 0.088 0.912 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.136 0.864 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.149 0.851 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.949 7.756 -0.739 8.031 hybrid contribution 0.750 -0.959 1.105 1.644 sum 2.698 6.797 0.366 7.322 Atomic orbital electron populations 1.20571 0.90853 1.01267 1.02502 1.19931 0.96648 0.91858 1.01747 1.20780 0.94095 0.96574 1.01678 1.20954 0.94120 0.97617 1.03639 1.20878 0.99371 0.91922 1.01098 1.21240 0.92911 0.99010 1.01322 1.17194 0.89918 0.83728 0.98070 1.45963 1.29677 1.11115 1.29882 1.77134 1.07898 1.16962 1.18871 1.23246 0.98882 0.93335 0.97598 1.21775 1.04142 1.04057 1.08428 1.18855 0.93175 0.84213 0.89307 1.18702 1.18506 0.94100 1.16879 0.90272 1.25789 0.96871 0.94831 0.96737 1.69776 1.35818 0.99222 1.35932 0.86079 0.80230 0.78694 0.80411 1.19233 1.20011 1.18486 0.91222 0.93046 0.91362 0.86423 0.86628 0.86239 0.85146 0.83297 0.83218 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 8.89 36.00 0.32 -1.46 16 2 C -0.10 -1.98 5.90 -104.42 -0.62 -2.60 16 3 C -0.11 -1.86 9.67 -39.61 -0.38 -2.24 16 4 C -0.14 -2.23 10.04 -39.53 -0.40 -2.62 16 5 C -0.11 -1.91 10.04 -39.61 -0.40 -2.31 16 6 C -0.12 -2.56 8.60 -39.37 -0.34 -2.90 16 7 C 0.21 4.69 6.05 -83.67 -0.51 4.18 16 8 N -0.38 -9.92 3.16 -8.31 -0.03 -9.94 16 9 N -0.39 -9.91 10.96 30.46 0.33 -9.58 16 10 C 0.05 1.23 11.93 -17.61 -0.21 1.02 16 11 C -0.35 -9.54 9.69 -38.82 -0.38 -9.92 16 12 C 0.26 7.12 6.54 -83.88 -0.55 6.57 16 13 C -0.45 -11.74 8.15 -38.14 -0.31 -12.05 16 14 H 0.08 2.02 7.15 -52.49 -0.38 1.65 16 15 C 0.08 1.93 5.48 -17.27 -0.09 1.83 16 16 N -0.78 -19.83 10.60 55.56 0.59 -19.24 16 17 Si 0.92 18.39 29.56 -169.99 -5.03 13.37 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 22 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 23 H 0.07 1.46 7.21 -51.93 -0.37 1.09 16 24 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 25 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 26 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 27 H 0.13 2.82 7.58 -52.49 -0.40 2.42 16 28 H 0.15 3.11 8.06 -52.49 -0.42 2.68 16 29 H 0.15 4.13 6.17 -52.49 -0.32 3.81 16 30 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 LS Contribution 261.42 15.07 3.94 3.94 Total: -1.00 -28.97 261.42 -7.19 -36.15 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -3.14 Total: 7.81 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -3.86 Total: -22.51 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.90 Total: -38.76 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.97 -7.19 -36.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214028643.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.433 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds