Wall clock time and date at job start Mon Mar 30 2020 02:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38114 * 120.03846 * 2 1 4 4 C 1.38281 * 120.07572 * 180.02562 * 3 2 1 5 5 C 1.38334 * 120.15534 * 359.97438 * 4 3 2 6 6 C 1.38069 * 120.07090 * 0.02562 * 5 4 3 7 7 C 1.38917 * 120.03967 * 179.73195 * 2 1 3 8 8 N 1.39861 * 120.07574 * 359.97438 * 7 2 1 9 9 N 1.40029 * 126.23129 * 48.45511 * 8 7 2 10 10 C 1.31333 * 109.12244 * 180.02562 * 9 8 7 11 11 C 1.38647 * 109.14347 * 0.02562 * 10 9 8 12 12 C 1.37794 * 126.23264 * 228.15858 * 8 7 2 13 13 C 1.40087 * 126.67682 * 359.95603 * 12 8 7 14 14 H 1.07999 * 120.00579 * 16.78648 * 13 12 8 15 15 C 1.40223 * 119.99679 * 196.79094 * 13 12 8 16 16 N 1.30740 * 120.00010 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99977 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47607 * 89.99725 * 17 15 13 19 19 H 1.48499 * 109.47287 * 209.99624 * 17 15 13 20 20 H 1.48503 * 109.47095 * 329.99472 * 17 15 13 21 21 H 1.08998 * 109.47312 * 95.05366 * 1 2 3 22 22 H 1.09002 * 109.46956 * 335.05142 * 1 2 3 23 23 H 1.08999 * 109.47203 * 215.05413 * 1 2 3 24 24 H 1.08000 * 119.96227 * 0.03192 * 3 2 1 25 25 H 1.07997 * 119.92351 * 180.02562 * 4 3 2 26 26 H 1.07995 * 119.96535 * 180.02562 * 5 4 3 27 27 H 1.08000 * 120.03399 * 179.97438 * 6 5 4 28 28 H 1.07999 * 125.43028 * 179.97438 * 10 9 8 29 29 H 1.07995 * 126.21663 * 180.02562 * 11 10 9 30 30 H 0.97005 * 120.00112 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1956 0.0000 4 6 3.5812 1.1965 -0.0005 5 6 4.2769 0.0009 -0.0005 6 6 3.5920 -1.1980 -0.0005 7 6 2.2024 -1.2026 0.0056 8 7 1.5055 -2.4152 0.0118 9 7 0.4433 -2.7637 -0.8314 10 6 0.0398 -3.9780 -0.5358 11 6 0.8118 -4.4731 0.5040 12 6 1.7429 -3.4867 0.8451 13 6 2.7234 -3.5702 1.8421 14 1 3.2016 -2.6728 2.2058 15 6 3.0841 -4.8192 2.3678 16 7 2.5049 -5.9056 1.9277 17 14 4.3910 -4.9306 3.6977 18 1 3.7484 -4.8321 5.0328 19 1 5.1021 -6.2294 3.5854 20 1 5.3616 -3.8189 3.5323 21 1 -0.3634 -0.0905 -1.0236 22 1 -0.3633 0.9318 0.4335 23 1 -0.3633 -0.8412 0.5902 24 1 1.6584 2.1310 0.0005 25 1 4.1193 2.1329 -0.0001 26 1 5.3568 0.0052 -0.0005 27 1 4.1358 -2.1311 -0.0010 28 1 -0.7655 -4.5064 -1.0242 29 1 0.7156 -5.4459 0.9631 30 1 2.7541 -6.7695 2.2917 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214028643.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:13 Heat of formation + Delta-G solvation = 71.474798 kcal Electronic energy + Delta-G solvation = -15229.214710 eV Core-core repulsion = 12796.794797 eV Total energy + Delta-G solvation = -2432.419913 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.43811 -39.61930 -35.68459 -34.04883 -33.44969 -30.94843 -29.64987 -27.68906 -27.10178 -23.90444 -22.67721 -21.52005 -20.82888 -19.22554 -17.74035 -16.81121 -16.48967 -16.19442 -15.42176 -15.05233 -14.59065 -14.25224 -14.07616 -13.91320 -13.75370 -13.51865 -13.20666 -12.99040 -12.83540 -12.35425 -12.11660 -11.98210 -11.85258 -11.33110 -10.87941 -10.38431 -9.68871 -9.41227 -8.74328 -8.59743 -6.56522 0.29100 0.45865 1.25306 1.37452 1.52310 1.73673 2.10734 2.31391 2.45878 2.84014 3.27072 3.96835 3.98168 4.22744 4.37815 4.43273 4.60749 4.70525 4.76446 4.81152 5.01689 5.03403 5.17381 5.33878 5.42844 5.55551 5.58464 5.67912 5.86828 5.93349 6.09486 6.40018 6.65213 6.73407 7.19420 7.53620 8.31595 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.024313 B = 0.010759 C = 0.008022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.383923 B = 2601.934983 C = 3489.775199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.118 4.118 3 C -0.104 4.104 4 C -0.124 4.124 5 C -0.108 4.108 6 C -0.145 4.145 7 C 0.151 3.849 8 N -0.389 5.389 9 N -0.396 5.396 10 C 0.045 3.955 11 C -0.384 4.384 12 C 0.234 3.766 13 C -0.470 4.470 14 H 0.077 0.923 15 C 0.036 3.964 16 N -0.811 5.811 17 Si 0.998 3.002 18 H -0.260 1.260 19 H -0.263 1.263 20 H -0.256 1.256 21 H 0.064 0.936 22 H 0.088 0.912 23 H 0.030 0.970 24 H 0.158 0.842 25 H 0.166 0.834 26 H 0.153 0.847 27 H 0.105 0.895 28 H 0.183 0.817 29 H 0.138 0.862 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 9.579 0.618 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.122 4.122 4 C -0.143 4.143 5 C -0.126 4.126 6 C -0.165 4.165 7 C 0.059 3.941 8 N -0.171 5.171 9 N -0.217 5.217 10 C -0.136 4.136 11 C -0.415 4.415 12 C 0.117 3.883 13 C -0.505 4.505 14 H 0.095 0.905 15 C -0.182 4.182 16 N -0.437 5.437 17 Si 0.817 3.183 18 H -0.184 1.184 19 H -0.187 1.187 20 H -0.179 1.179 21 H 0.082 0.918 22 H 0.106 0.894 23 H 0.049 0.951 24 H 0.176 0.824 25 H 0.183 0.817 26 H 0.171 0.829 27 H 0.124 0.876 28 H 0.200 0.800 29 H 0.155 0.845 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.539 10.353 -0.171 10.942 hybrid contribution 0.279 -1.635 0.863 1.870 sum 3.818 8.718 0.693 9.542 Atomic orbital electron populations 1.20490 0.90617 1.01516 1.01738 1.20222 0.97197 0.92220 1.02383 1.21254 0.94939 0.96544 0.99509 1.21527 0.93855 0.98842 1.00027 1.21287 1.01089 0.90926 0.99347 1.21248 0.92329 0.99861 1.03105 1.17763 0.90964 0.83675 1.01728 1.46097 1.29642 1.12018 1.29387 1.76994 1.08217 1.17167 1.19360 1.23682 0.99460 0.93191 0.97235 1.21816 1.05598 1.04081 1.10042 1.19254 0.93691 0.85209 0.90099 1.18927 1.19048 0.94978 1.17589 0.90482 1.26810 0.98865 0.93801 0.98692 1.69840 1.36908 1.00000 1.36937 0.84964 0.77125 0.79184 0.77028 1.18447 1.18680 1.17936 0.91764 0.89366 0.95115 0.82439 0.81696 0.82914 0.87644 0.80021 0.84485 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 8.89 71.24 0.63 -2.59 16 2 C -0.12 -4.59 5.90 -19.73 -0.12 -4.71 16 3 C -0.10 -3.02 9.67 22.25 0.22 -2.81 16 4 C -0.12 -3.21 10.04 22.30 0.22 -2.99 16 5 C -0.11 -3.32 10.04 22.25 0.22 -3.10 16 6 C -0.14 -6.03 8.60 22.40 0.19 -5.84 16 7 C 0.15 7.06 6.05 38.20 0.23 7.29 16 8 N -0.39 -20.99 3.16 -180.22 -0.57 -21.56 16 9 N -0.40 -21.09 10.96 -57.56 -0.63 -21.72 16 10 C 0.05 2.33 11.93 84.87 1.01 3.34 16 11 C -0.38 -21.94 9.69 22.76 0.22 -21.72 16 12 C 0.23 13.50 6.54 39.05 0.26 13.75 16 13 C -0.47 -25.78 8.15 23.20 0.19 -25.59 16 14 H 0.08 4.10 7.15 -2.91 -0.02 4.08 16 15 C 0.04 1.81 5.48 85.34 0.47 2.28 16 16 N -0.81 -42.45 10.60 21.88 0.23 -42.22 16 17 Si 1.00 37.72 29.56 68.60 2.03 39.75 16 18 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 20 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 21 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 22 H 0.09 2.52 8.05 -2.39 -0.02 2.50 16 23 H 0.03 1.34 7.21 -2.39 -0.02 1.32 16 24 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 25 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 26 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 27 H 0.11 4.80 7.58 -2.91 -0.02 4.78 16 28 H 0.18 7.75 8.06 -2.91 -0.02 7.72 16 29 H 0.14 8.02 6.17 -2.91 -0.02 8.00 16 30 H 0.29 13.56 8.29 -92.70 -0.77 12.80 16 Total: -1.00 -67.24 261.42 5.95 -61.29 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 1.14 Total: 27.14 kcal Atomic # 6 Polarization: -46.43 SS G_CDS: 3.75 Total: -42.68 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -0.97 Total: -85.50 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Total: -67.24 5.95 -61.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214028643.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.766 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds