Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86799 * 120.00020 * 2 1 4 4 H 1.48494 * 109.47280 * 270.00334 * 3 2 1 5 5 H 1.48505 * 109.47307 * 30.00075 * 3 2 1 6 6 H 1.48500 * 109.47242 * 150.00118 * 3 2 1 7 7 C 1.40163 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.40229 * 120.00258 * 0.02562 * 7 2 1 10 10 C 1.39804 * 126.65977 * 0.02562 * 9 7 2 11 11 C 1.38710 * 107.53582 * 179.77466 * 10 9 7 12 12 N 1.31237 * 109.07966 * 0.22376 * 11 10 9 13 13 N 1.37469 * 126.66286 * 180.18500 * 9 7 2 14 14 C 1.46500 * 126.20235 * 359.97438 * 13 9 7 15 15 C 1.50700 * 109.47231 * 270.24737 * 14 13 9 16 16 C 1.38233 * 120.00105 * 269.72780 * 15 14 13 17 17 C 1.38232 * 119.99927 * 179.76662 * 16 15 14 18 18 C 1.38233 * 119.99859 * 0.50437 * 17 16 15 19 19 C 1.38228 * 120.00541 * 359.74930 * 18 17 16 20 20 C 1.38233 * 119.99818 * 89.99880 * 15 14 13 21 21 H 0.97001 * 119.99859 * 359.97438 * 1 2 3 22 22 H 1.08002 * 126.23426 * 0.04239 * 10 9 7 23 23 H 1.08002 * 125.45798 * 180.25154 * 11 10 9 24 24 H 1.09003 * 109.46827 * 30.24708 * 14 13 9 25 25 H 1.08995 * 109.46933 * 150.24131 * 14 13 9 26 26 H 1.08002 * 119.99550 * 359.97438 * 16 15 14 27 27 H 1.08000 * 119.99764 * 180.23072 * 17 16 15 28 28 H 1.08006 * 119.99708 * 179.72850 * 18 17 16 29 29 H 1.07995 * 120.00685 * 179.97438 * 19 18 17 30 30 H 1.08002 * 120.00572 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4891 2.0465 -1.4000 5 1 1.4391 2.6527 0.7001 6 1 3.5392 1.4402 0.7000 7 6 2.0084 -1.2139 0.0005 8 1 3.0885 -1.2139 0.0001 9 6 1.3073 -2.4283 0.0005 10 6 -0.0813 -2.5905 -0.0005 11 6 -0.3430 -3.9526 -0.0053 12 7 0.7941 -4.6079 -0.0023 13 7 1.8519 -3.6905 0.0046 14 6 3.2801 -4.0167 0.0092 15 6 3.7752 -4.1254 -1.4100 16 6 3.7409 -5.3435 -2.0626 17 6 4.1905 -5.4422 -3.3660 18 6 4.6841 -4.3250 -4.0133 19 6 4.7232 -3.1079 -3.3591 20 6 4.2687 -3.0082 -2.0573 21 1 -0.4850 0.8401 0.0004 22 1 -0.8164 -1.7992 -0.0020 23 1 -1.3251 -4.4019 -0.0110 24 1 3.8305 -3.2310 0.5268 25 1 3.4342 -4.9662 0.5216 26 1 3.3598 -6.2174 -1.5551 27 1 4.1603 -6.3932 -3.8770 28 1 5.0395 -4.4030 -5.0302 29 1 5.1092 -2.2352 -3.8646 30 1 4.2999 -2.0574 -1.5459 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214028801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = 87.530087 kcal Electronic energy + Delta-G solvation = -15046.195503 eV Core-core repulsion = 12614.471800 eV Total energy + Delta-G solvation = -2431.723703 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.21096 -38.31441 -33.64346 -33.07359 -30.52114 -29.66172 -28.51042 -25.26064 -24.90404 -22.19193 -21.14814 -19.56278 -18.95437 -16.93793 -16.38723 -15.46177 -14.90032 -14.68036 -14.21752 -13.44649 -13.10046 -12.96094 -12.34080 -12.17177 -11.98500 -11.73015 -11.61308 -11.30182 -11.09109 -10.68008 -10.54807 -10.49004 -9.77926 -9.44828 -8.66085 -8.52350 -8.41364 -7.74826 -6.75853 -6.62147 -4.44799 1.68888 1.80140 2.92764 3.05402 3.08261 3.64483 3.85353 4.03289 4.52474 4.58198 5.19810 5.20573 5.31669 5.41387 5.55960 5.66130 5.87646 6.00079 6.16642 6.35674 6.41442 6.51431 6.81692 6.84887 7.06156 7.06891 7.36199 7.38835 7.52272 7.86746 8.15138 8.51522 8.73953 8.87766 9.24534 9.69072 10.26635 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.010166 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.721881 B = 2753.664146 C = 3634.406249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.077 3.923 3 Si 0.919 3.081 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.073 0.927 9 C 0.255 3.745 10 C -0.362 4.362 11 C 0.038 3.962 12 N -0.395 5.395 13 N -0.425 5.425 14 C 0.194 3.806 15 C -0.095 4.095 16 C -0.097 4.097 17 C -0.131 4.131 18 C -0.126 4.126 19 C -0.128 4.128 20 C -0.093 4.093 21 H 0.277 0.723 22 H 0.158 0.842 23 H 0.143 0.857 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.655 -2.290 -3.848 8.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.142 4.142 3 Si 0.744 3.256 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.484 4.484 8 H 0.091 0.909 9 C 0.136 3.864 10 C -0.393 4.393 11 C -0.143 4.143 12 N -0.218 5.218 13 N -0.213 5.213 14 C 0.071 3.929 15 C -0.096 4.096 16 C -0.116 4.116 17 C -0.149 4.149 18 C -0.144 4.144 19 C -0.146 4.146 20 C -0.112 4.112 21 H 0.089 0.911 22 H 0.175 0.825 23 H 0.161 0.839 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.059 -3.366 -3.811 9.529 hybrid contribution -0.136 1.588 -0.153 1.602 sum 7.923 -1.778 -3.964 9.036 Atomic orbital electron populations 1.69740 1.07375 1.28370 1.35738 1.25735 0.94861 1.00906 0.92716 0.86136 0.80068 0.80285 0.79157 1.19444 1.20091 1.18686 1.18573 0.93854 0.88704 1.47234 0.90875 1.18752 0.92160 0.83729 0.91720 1.22142 0.95220 0.94546 1.27380 1.23120 0.95576 0.94863 1.00723 1.76848 0.93894 1.16166 1.34849 1.48487 1.02754 1.04198 1.65843 1.19923 0.79499 1.01573 0.91945 1.20404 0.97886 0.93534 0.97805 1.21043 0.98294 0.97503 0.94743 1.21041 1.00392 0.98376 0.95081 1.21054 1.00693 0.93225 0.99426 1.21096 1.00953 0.97416 0.95101 1.21226 0.96772 0.98371 0.94820 0.91133 0.82530 0.83924 0.89752 0.90416 0.86278 0.86621 0.86720 0.86422 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.29 10.30 55.56 0.57 -19.72 16 2 C 0.08 1.92 5.50 -17.28 -0.10 1.82 16 3 Si 0.92 18.39 29.56 -169.99 -5.03 13.37 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.45 -11.62 9.02 -38.11 -0.34 -11.96 16 8 H 0.07 1.76 6.23 -52.48 -0.33 1.43 16 9 C 0.26 6.99 6.75 -84.00 -0.57 6.43 16 10 C -0.36 -10.10 9.77 -38.82 -0.38 -10.48 16 11 C 0.04 0.98 11.93 -17.63 -0.21 0.77 16 12 N -0.39 -10.32 12.54 30.45 0.38 -9.93 16 13 N -0.42 -10.72 3.67 -59.79 -0.22 -10.94 16 14 C 0.19 3.96 6.37 -5.19 -0.03 3.92 16 15 C -0.09 -1.80 5.46 -104.63 -0.57 -2.38 16 16 C -0.10 -1.70 9.70 -39.59 -0.38 -2.08 16 17 C -0.13 -2.01 10.05 -39.59 -0.40 -2.40 16 18 C -0.13 -1.85 10.05 -39.59 -0.40 -2.25 16 19 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 20 C -0.09 -1.70 9.70 -39.58 -0.38 -2.08 16 21 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 22 H 0.16 4.48 5.73 -52.49 -0.30 4.18 16 23 H 0.14 3.16 8.06 -52.49 -0.42 2.74 16 24 H 0.08 1.62 7.36 -51.93 -0.38 1.23 16 25 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 26 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 27 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.13 2.31 7.07 -52.49 -0.37 1.94 16 LS Contribution 264.79 15.07 3.99 3.99 Total: -1.00 -30.09 264.79 -7.51 -37.60 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -3.05 Total: 8.74 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -4.16 Total: -23.12 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.73 Total: -40.59 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.09 -7.51 -37.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214028801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.135 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds