Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86799 * 120.00020 * 2 1 4 4 H 1.48494 * 109.47280 * 270.00334 * 3 2 1 5 5 H 1.48505 * 109.47307 * 30.00075 * 3 2 1 6 6 H 1.48500 * 109.47242 * 150.00118 * 3 2 1 7 7 C 1.40163 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.40229 * 120.00258 * 0.02562 * 7 2 1 10 10 C 1.39804 * 126.65977 * 0.02562 * 9 7 2 11 11 C 1.38710 * 107.53582 * 179.77466 * 10 9 7 12 12 N 1.31237 * 109.07966 * 0.22376 * 11 10 9 13 13 N 1.37469 * 126.66286 * 180.18500 * 9 7 2 14 14 C 1.46500 * 126.20235 * 359.97438 * 13 9 7 15 15 C 1.50700 * 109.47231 * 270.24737 * 14 13 9 16 16 C 1.38233 * 120.00105 * 269.72780 * 15 14 13 17 17 C 1.38232 * 119.99927 * 179.76662 * 16 15 14 18 18 C 1.38233 * 119.99859 * 0.50437 * 17 16 15 19 19 C 1.38228 * 120.00541 * 359.74930 * 18 17 16 20 20 C 1.38233 * 119.99818 * 89.99880 * 15 14 13 21 21 H 0.97001 * 119.99859 * 359.97438 * 1 2 3 22 22 H 1.08002 * 126.23426 * 0.04239 * 10 9 7 23 23 H 1.08002 * 125.45798 * 180.25154 * 11 10 9 24 24 H 1.09003 * 109.46827 * 30.24708 * 14 13 9 25 25 H 1.08995 * 109.46933 * 150.24131 * 14 13 9 26 26 H 1.08002 * 119.99550 * 359.97438 * 16 15 14 27 27 H 1.08000 * 119.99764 * 180.23072 * 17 16 15 28 28 H 1.08006 * 119.99708 * 179.72850 * 18 17 16 29 29 H 1.07995 * 120.00685 * 179.97438 * 19 18 17 30 30 H 1.08002 * 120.00572 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4891 2.0465 -1.4000 5 1 1.4391 2.6527 0.7001 6 1 3.5392 1.4402 0.7000 7 6 2.0084 -1.2139 0.0005 8 1 3.0885 -1.2139 0.0001 9 6 1.3073 -2.4283 0.0005 10 6 -0.0813 -2.5905 -0.0005 11 6 -0.3430 -3.9526 -0.0053 12 7 0.7941 -4.6079 -0.0023 13 7 1.8519 -3.6905 0.0046 14 6 3.2801 -4.0167 0.0092 15 6 3.7752 -4.1254 -1.4100 16 6 3.7409 -5.3435 -2.0626 17 6 4.1905 -5.4422 -3.3660 18 6 4.6841 -4.3250 -4.0133 19 6 4.7232 -3.1079 -3.3591 20 6 4.2687 -3.0082 -2.0573 21 1 -0.4850 0.8401 0.0004 22 1 -0.8164 -1.7992 -0.0020 23 1 -1.3251 -4.4019 -0.0110 24 1 3.8305 -3.2310 0.5268 25 1 3.4342 -4.9662 0.5216 26 1 3.3598 -6.2174 -1.5551 27 1 4.1603 -6.3932 -3.8770 28 1 5.0395 -4.4030 -5.0302 29 1 5.1092 -2.2352 -3.8646 30 1 4.2999 -2.0574 -1.5459 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214028801.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = 70.939510 kcal Electronic energy + Delta-G solvation = -15046.914925 eV Core-core repulsion = 12614.471800 eV Total energy + Delta-G solvation = -2432.443125 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95233 -39.82126 -35.57379 -34.64747 -31.80500 -31.36569 -30.37731 -27.14976 -26.65460 -23.47602 -22.57003 -21.53265 -20.80637 -18.81170 -17.78980 -17.27982 -16.24924 -16.04824 -15.92586 -15.03881 -14.75542 -14.36163 -14.02515 -13.84465 -13.61846 -13.45689 -13.32087 -12.91586 -12.75936 -12.16639 -12.04001 -11.86866 -11.67758 -11.28544 -10.68529 -9.81666 -9.79459 -9.64132 -8.77830 -8.50960 -6.46782 0.37956 0.52455 1.27684 1.41585 1.56054 1.79422 2.17432 2.42797 2.57458 3.03308 3.37475 3.82807 3.91508 4.16144 4.20137 4.29374 4.50241 4.58675 4.70884 4.77007 5.07199 5.11947 5.20052 5.38100 5.53604 5.56863 5.60627 5.73232 5.92221 6.09780 6.13381 6.52190 6.74182 6.86887 7.26349 7.68124 8.40563 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.010166 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.721881 B = 2753.664146 C = 3634.406249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.033 3.967 3 Si 0.996 3.004 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.468 4.468 8 H 0.084 0.916 9 C 0.233 3.767 10 C -0.400 4.400 11 C 0.033 3.967 12 N -0.406 5.406 13 N -0.428 5.428 14 C 0.188 3.812 15 C -0.118 4.118 16 C -0.113 4.113 17 C -0.130 4.130 18 C -0.119 4.119 19 C -0.131 4.131 20 C -0.114 4.114 21 H 0.286 0.714 22 H 0.143 0.857 23 H 0.172 0.828 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.118 0.882 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.234 -1.782 -5.263 10.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.184 4.184 3 Si 0.816 3.184 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.504 4.504 8 H 0.103 0.897 9 C 0.114 3.886 10 C -0.432 4.432 11 C -0.148 4.148 12 N -0.229 5.229 13 N -0.217 5.217 14 C 0.066 3.934 15 C -0.119 4.119 16 C -0.131 4.131 17 C -0.147 4.147 18 C -0.137 4.137 19 C -0.149 4.149 20 C -0.132 4.132 21 H 0.097 0.903 22 H 0.161 0.839 23 H 0.189 0.811 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.136 0.864 27 H 0.164 0.836 28 H 0.170 0.830 29 H 0.161 0.839 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.650 -2.893 -5.224 11.348 hybrid contribution -0.616 1.391 0.246 1.541 sum 9.033 -1.502 -4.978 10.423 Atomic orbital electron populations 1.69827 1.09063 1.29933 1.35397 1.26803 0.95700 1.04451 0.91446 0.84982 0.78819 0.75047 0.79532 1.18613 1.19279 1.17674 1.18945 0.94583 0.89021 1.47815 0.89749 1.19140 0.92548 0.85058 0.91885 1.22228 0.95740 0.95274 1.29917 1.23522 0.96844 0.94250 1.00210 1.76741 0.94333 1.16945 1.34853 1.48769 1.04103 1.03394 1.65389 1.20179 0.77231 1.02183 0.93781 1.20311 0.99679 0.94757 0.97154 1.21186 0.99037 0.96921 0.96001 1.21429 0.99050 1.00122 0.94140 1.21513 0.99051 0.92264 1.00870 1.21441 1.00176 0.99087 0.94175 1.21297 0.98012 0.97750 0.96167 0.90289 0.83918 0.81062 0.89327 0.89304 0.86377 0.83579 0.82972 0.83914 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.69 10.30 21.87 0.23 -42.47 16 2 C 0.03 1.62 5.50 85.32 0.47 2.09 16 3 Si 1.00 36.96 29.56 68.60 2.03 38.99 16 4 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 7 C -0.47 -24.59 9.02 23.22 0.21 -24.38 16 8 H 0.08 4.09 6.23 -2.91 -0.02 4.07 16 9 C 0.23 13.09 6.75 39.12 0.26 13.36 16 10 C -0.40 -23.05 9.77 22.76 0.22 -22.82 16 11 C 0.03 1.71 11.93 84.89 1.01 2.73 16 12 N -0.41 -21.50 12.54 -57.57 -0.72 -22.22 16 13 N -0.43 -22.00 3.67 -343.08 -1.26 -23.26 16 14 C 0.19 7.79 6.37 85.63 0.55 8.33 16 15 C -0.12 -4.47 5.46 -19.87 -0.11 -4.58 16 16 C -0.11 -3.84 9.70 22.27 0.22 -3.62 16 17 C -0.13 -3.62 10.05 22.27 0.22 -3.39 16 18 C -0.12 -3.09 10.05 22.27 0.22 -2.87 16 19 C -0.13 -3.84 10.05 22.27 0.22 -3.62 16 20 C -0.11 -4.06 9.70 22.27 0.22 -3.85 16 21 H 0.29 13.47 8.29 -92.71 -0.77 12.70 16 22 H 0.14 8.51 5.73 -2.91 -0.02 8.49 16 23 H 0.17 7.62 8.06 -2.91 -0.02 7.59 16 24 H 0.09 3.48 7.36 -2.39 -0.02 3.47 16 25 H 0.09 3.36 8.08 -2.39 -0.02 3.34 16 26 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 27 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 28 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 29 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 30 H 0.12 4.30 7.07 -2.91 -0.02 4.28 16 Total: -1.00 -65.35 264.79 5.13 -60.22 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 1.14 Total: 31.37 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 3.72 Total: -42.63 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -1.76 Total: -87.95 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -65.35 5.13 -60.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214028801.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.155 kcal (2) G-P(sol) polarization free energy of solvation -65.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds