Wall clock time and date at job start Mon Mar 30 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31082 * 1 3 3 Si 1.86799 * 120.00076 * 2 1 4 4 H 1.48504 * 109.47581 * 270.00692 * 3 2 1 5 5 H 1.48499 * 109.46955 * 30.00624 * 3 2 1 6 6 H 1.48498 * 109.47110 * 150.00446 * 3 2 1 7 7 C 1.39551 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99861 * 162.76565 * 7 2 1 9 9 C 1.41205 * 119.99662 * 343.04470 * 7 2 1 10 10 C 1.46695 * 120.37645 * 336.16611 * 9 7 2 11 11 C 1.35425 * 118.98205 * 179.73156 * 10 9 7 12 12 C 1.41254 * 119.80756 * 0.54957 * 11 10 9 13 13 C 1.38107 * 132.66676 * 179.69401 * 12 11 10 14 14 N 1.33498 * 107.70375 * 180.02562 * 13 12 11 15 15 C 1.30745 * 109.90391 * 0.02562 * 14 13 12 16 16 C 1.50706 * 125.41962 * 180.02562 * 15 14 13 17 17 C 1.52994 * 117.49973 * 8.72336 * 16 15 14 18 18 C 1.52989 * 117.49947 * 300.05943 * 16 15 14 19 19 N 1.36256 * 109.15950 * 359.97438 * 15 14 13 20 20 C 1.36153 * 132.30043 * 180.02562 * 19 15 14 21 21 H 0.97002 * 120.00010 * 359.97438 * 1 2 3 22 22 H 1.08004 * 120.50542 * 359.97438 * 10 9 7 23 23 H 1.07999 * 120.09562 * 180.28478 * 11 10 9 24 24 H 1.07996 * 126.14826 * 0.02562 * 13 12 11 25 25 H 1.08999 * 115.54564 * 154.39034 * 16 15 14 26 26 H 1.09000 * 117.49914 * 359.97438 * 17 16 15 27 27 H 1.09000 * 117.49845 * 145.02244 * 17 16 15 28 28 H 1.09006 * 117.50165 * 214.97843 * 18 16 15 29 29 H 1.09000 * 117.50109 * 359.97438 * 18 16 15 30 30 H 1.07997 * 119.92343 * 359.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.4923 2.0466 -1.4001 5 1 1.4423 2.6526 0.7002 6 1 3.5424 1.4401 0.6999 7 6 2.0086 -1.2085 -0.0005 8 1 3.0522 -1.2293 -0.2777 9 6 1.3486 -2.4050 0.3556 10 6 0.1503 -2.3678 1.2009 11 6 -0.4636 -3.5318 1.5206 12 6 0.0617 -4.7553 1.0489 13 6 -0.3340 -6.0684 1.2114 14 7 0.5290 -6.8380 0.5442 15 6 1.4405 -6.0938 -0.0258 16 6 2.5834 -6.6027 -0.8660 17 6 2.5779 -8.0855 -1.2426 18 6 3.5738 -7.5628 -0.2043 19 7 1.1919 -4.7849 0.2598 20 6 1.8314 -3.6339 -0.0866 21 1 -0.4850 0.8401 0.0004 22 1 -0.2388 -1.4262 1.5594 23 1 -1.3497 -3.5250 2.1380 24 1 -1.1880 -6.4112 1.7767 25 1 2.9779 -5.8988 -1.5988 26 1 1.7478 -8.6932 -0.8823 27 1 2.9692 -8.3573 -2.2229 28 1 4.6200 -7.4910 -0.5021 29 1 3.3991 -7.8262 0.8389 30 1 2.7157 -3.6742 -0.7053 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214886870.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:02 Heat of formation + Delta-G solvation = 91.416731 kcal Electronic energy + Delta-G solvation = -14890.221427 eV Core-core repulsion = 12458.666261 eV Total energy + Delta-G solvation = -2431.555166 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.32578 -36.83717 -35.83597 -33.58291 -31.90080 -29.84884 -27.18107 -25.39893 -22.92357 -22.04165 -21.67273 -21.07656 -19.22693 -17.49231 -16.31080 -15.62242 -15.25565 -14.77448 -14.44010 -14.01710 -13.59876 -13.34954 -12.74096 -12.05463 -11.63477 -11.50457 -11.37433 -11.19759 -11.08480 -10.76860 -10.47658 -10.14840 -10.06957 -9.91878 -9.51820 -9.27471 -9.13793 -7.87669 -7.14469 -6.30261 -4.65743 2.26166 2.50744 2.91122 2.92142 2.98857 3.67903 3.79823 3.96270 4.28610 4.49975 5.09945 5.16951 5.30934 5.37120 5.54925 5.82623 5.93879 6.05259 6.16955 6.19993 6.25677 6.46666 6.54453 6.57692 6.61630 6.84899 7.18188 7.40375 7.46066 7.73185 7.85238 8.03242 8.31809 8.48926 8.72697 9.03459 9.84537 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.007222 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.858744 B = 3875.866876 C = 4482.124303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.442 4.442 8 H 0.087 0.913 9 C 0.107 3.893 10 C -0.080 4.080 11 C -0.123 4.123 12 C -0.012 4.012 13 C -0.067 4.067 14 N -0.468 5.468 15 C 0.122 3.878 16 C -0.055 4.055 17 C -0.159 4.159 18 C -0.171 4.171 19 N -0.293 5.293 20 C -0.177 4.177 21 H 0.287 0.713 22 H 0.137 0.863 23 H 0.121 0.879 24 H 0.160 0.840 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 -2.638 0.138 3.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.472 4.472 8 H 0.105 0.895 9 C 0.102 3.898 10 C -0.102 4.102 11 C -0.142 4.142 12 C -0.129 4.129 13 C -0.225 4.225 14 N -0.184 5.184 15 C -0.128 4.128 16 C -0.075 4.075 17 C -0.197 4.197 18 C -0.209 4.209 19 N 0.043 4.957 20 C -0.299 4.299 21 H 0.098 0.902 22 H 0.155 0.845 23 H 0.139 0.861 24 H 0.177 0.823 25 H 0.127 0.873 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.617 -3.354 -0.049 4.254 hybrid contribution 0.247 1.812 -0.001 1.829 sum 2.864 -1.542 -0.050 3.253 Atomic orbital electron populations 1.69883 1.07658 1.30123 1.33838 1.25967 0.94884 1.01874 0.91708 0.86130 0.80534 0.79594 0.79574 1.19147 1.19762 1.18178 1.19317 0.98107 0.90322 1.39404 0.89543 1.18315 0.90735 0.91173 0.89555 1.22628 0.95120 0.97174 0.95265 1.20154 1.00903 0.90018 1.03166 1.19376 0.93141 0.96369 1.03976 1.22010 1.03355 0.87687 1.09401 1.69472 1.03985 1.33386 1.11567 1.21530 1.02262 0.78461 1.10592 1.19743 0.94977 0.92901 0.99886 1.22892 1.02103 0.95573 0.99084 1.22991 0.95149 1.03960 0.98841 1.41980 1.17747 1.06242 1.29715 1.21304 1.07614 0.83109 1.17894 0.90203 0.84491 0.86139 0.82308 0.87280 0.87763 0.89030 0.88987 0.88781 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.56 10.87 55.53 0.60 -17.95 16 2 C 0.07 1.71 5.20 -17.38 -0.09 1.62 16 3 Si 0.92 16.99 29.59 -169.99 -5.03 11.96 16 4 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 6 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 7 C -0.44 -10.76 9.04 -37.97 -0.34 -11.11 16 8 H 0.09 2.00 7.90 -52.49 -0.41 1.59 16 9 C 0.11 2.68 5.69 -104.98 -0.60 2.08 16 10 C -0.08 -1.91 8.86 -37.17 -0.33 -2.24 16 11 C -0.12 -2.75 10.07 -39.44 -0.40 -3.15 16 12 C -0.01 -0.30 6.76 -84.05 -0.57 -0.87 16 13 C -0.07 -1.50 12.01 -16.88 -0.20 -1.70 16 14 N -0.47 -10.72 10.72 -9.82 -0.11 -10.83 16 15 C 0.12 2.77 7.53 -154.09 -1.16 1.61 16 16 C -0.06 -1.01 6.13 -91.78 -0.56 -1.57 16 17 C -0.16 -2.43 10.13 -26.70 -0.27 -2.70 16 18 C -0.17 -2.64 10.24 -26.70 -0.27 -2.91 16 19 N -0.29 -7.12 2.93 -56.87 -0.17 -7.29 16 20 C -0.18 -4.34 10.62 -15.26 -0.16 -4.50 16 21 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 22 H 0.14 3.23 6.25 -52.48 -0.33 2.90 16 23 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 24 H 0.16 2.99 8.06 -52.49 -0.42 2.57 16 25 H 0.11 1.90 8.14 -51.93 -0.42 1.47 16 26 H 0.10 1.71 7.87 -51.93 -0.41 1.30 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.13 3.03 8.06 -52.49 -0.42 2.60 16 LS Contribution 264.78 15.07 3.99 3.99 Total: -1.00 -27.38 264.78 -8.91 -36.29 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -3.25 Total: 9.26 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -4.96 Total: -25.44 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.33 Total: -36.07 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.38 -8.91 -36.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214886870.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.704 kcal (2) G-P(sol) polarization free energy of solvation -27.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds