Wall clock time and date at job start Mon Mar 30 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31082 * 1 3 3 Si 1.86799 * 120.00076 * 2 1 4 4 H 1.48504 * 109.47581 * 270.00692 * 3 2 1 5 5 H 1.48499 * 109.46955 * 30.00624 * 3 2 1 6 6 H 1.48498 * 109.47110 * 150.00446 * 3 2 1 7 7 C 1.39551 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99861 * 162.76565 * 7 2 1 9 9 C 1.41205 * 119.99662 * 343.04470 * 7 2 1 10 10 C 1.46695 * 120.37645 * 336.16611 * 9 7 2 11 11 C 1.35425 * 118.98205 * 179.73156 * 10 9 7 12 12 C 1.41254 * 119.80756 * 0.54957 * 11 10 9 13 13 C 1.38107 * 132.66676 * 179.69401 * 12 11 10 14 14 N 1.33498 * 107.70375 * 180.02562 * 13 12 11 15 15 C 1.30745 * 109.90391 * 0.02562 * 14 13 12 16 16 C 1.50706 * 125.41962 * 180.02562 * 15 14 13 17 17 C 1.52994 * 117.49973 * 8.72336 * 16 15 14 18 18 C 1.52989 * 117.49947 * 300.05943 * 16 15 14 19 19 N 1.36256 * 109.15950 * 359.97438 * 15 14 13 20 20 C 1.36153 * 132.30043 * 180.02562 * 19 15 14 21 21 H 0.97002 * 120.00010 * 359.97438 * 1 2 3 22 22 H 1.08004 * 120.50542 * 359.97438 * 10 9 7 23 23 H 1.07999 * 120.09562 * 180.28478 * 11 10 9 24 24 H 1.07996 * 126.14826 * 0.02562 * 13 12 11 25 25 H 1.08999 * 115.54564 * 154.39034 * 16 15 14 26 26 H 1.09000 * 117.49914 * 359.97438 * 17 16 15 27 27 H 1.09000 * 117.49845 * 145.02244 * 17 16 15 28 28 H 1.09006 * 117.50165 * 214.97843 * 18 16 15 29 29 H 1.09000 * 117.50109 * 359.97438 * 18 16 15 30 30 H 1.07997 * 119.92343 * 359.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.4923 2.0466 -1.4001 5 1 1.4423 2.6526 0.7002 6 1 3.5424 1.4401 0.6999 7 6 2.0086 -1.2085 -0.0005 8 1 3.0522 -1.2293 -0.2777 9 6 1.3486 -2.4050 0.3556 10 6 0.1503 -2.3678 1.2009 11 6 -0.4636 -3.5318 1.5206 12 6 0.0617 -4.7553 1.0489 13 6 -0.3340 -6.0684 1.2114 14 7 0.5290 -6.8380 0.5442 15 6 1.4405 -6.0938 -0.0258 16 6 2.5834 -6.6027 -0.8660 17 6 2.5779 -8.0855 -1.2426 18 6 3.5738 -7.5628 -0.2043 19 7 1.1919 -4.7849 0.2598 20 6 1.8314 -3.6339 -0.0866 21 1 -0.4850 0.8401 0.0004 22 1 -0.2388 -1.4262 1.5594 23 1 -1.3497 -3.5250 2.1380 24 1 -1.1880 -6.4112 1.7767 25 1 2.9779 -5.8988 -1.5988 26 1 1.7478 -8.6932 -0.8823 27 1 2.9692 -8.3573 -2.2229 28 1 4.6200 -7.4910 -0.5021 29 1 3.3991 -7.8262 0.8389 30 1 2.7157 -3.6742 -0.7053 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214886870.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:02 Heat of formation + Delta-G solvation = 78.937526 kcal Electronic energy + Delta-G solvation = -14890.762566 eV Core-core repulsion = 12458.666261 eV Total energy + Delta-G solvation = -2432.096304 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.07499 -38.36295 -37.41986 -35.34643 -33.67064 -31.65088 -28.90180 -27.18870 -24.51576 -23.47106 -23.24365 -22.81046 -20.88978 -19.21929 -17.95628 -17.35226 -16.99631 -16.39683 -16.10765 -15.53040 -15.15223 -14.97590 -14.40215 -13.75274 -13.38327 -13.00133 -12.92404 -12.76739 -12.48404 -12.32173 -12.01711 -11.70921 -11.61650 -11.39284 -11.24471 -10.99408 -10.88699 -9.69886 -8.87499 -8.06183 -6.50690 0.45792 0.76302 1.39085 1.45532 1.54800 2.11419 2.17682 2.28020 2.53244 3.09234 3.34472 3.62558 3.91934 4.01170 4.08812 4.22826 4.39474 4.45634 4.53185 4.77425 4.80436 4.84074 4.96624 5.09925 5.14247 5.33063 5.42584 5.58167 5.65837 5.98755 6.06637 6.22699 6.50316 6.68439 6.92837 7.26788 8.14295 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.007222 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.858744 B = 3875.866876 C = 4482.124303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.040 3.960 3 Si 0.991 3.009 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.470 4.470 8 H 0.088 0.912 9 C 0.084 3.916 10 C -0.103 4.103 11 C -0.113 4.113 12 C -0.048 4.048 13 C -0.064 4.064 14 N -0.483 5.483 15 C 0.120 3.880 16 C -0.094 4.094 17 C -0.138 4.138 18 C -0.153 4.153 19 N -0.308 5.308 20 C -0.202 4.202 21 H 0.297 0.703 22 H 0.136 0.864 23 H 0.154 0.846 24 H 0.191 0.809 25 H 0.113 0.887 26 H 0.091 0.909 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 -2.686 -0.035 4.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.177 4.177 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.106 0.894 9 C 0.080 3.920 10 C -0.125 4.125 11 C -0.132 4.132 12 C -0.163 4.163 13 C -0.221 4.221 14 N -0.199 5.199 15 C -0.132 4.132 16 C -0.114 4.114 17 C -0.175 4.175 18 C -0.191 4.191 19 N 0.027 4.973 20 C -0.324 4.324 21 H 0.108 0.892 22 H 0.153 0.847 23 H 0.171 0.829 24 H 0.208 0.792 25 H 0.131 0.869 26 H 0.110 0.890 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.099 0.901 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.155 -3.410 -0.216 4.651 hybrid contribution 0.026 1.714 0.048 1.715 sum 3.181 -1.696 -0.168 3.609 Atomic orbital electron populations 1.69908 1.08988 1.31675 1.33355 1.26817 0.95590 1.04771 0.90544 0.85044 0.79062 0.75060 0.79720 1.18600 1.18600 1.18092 1.19612 0.98466 0.91222 1.40514 0.89412 1.18683 0.91502 0.91805 0.90044 1.22641 0.95668 0.97684 0.96483 1.20511 1.01266 0.89166 1.02303 1.19854 0.93879 0.97429 1.05131 1.22614 1.03700 0.87121 1.08626 1.69543 1.04508 1.33497 1.12381 1.22478 1.02798 0.78072 1.09828 1.19998 0.95474 0.94773 1.01109 1.22981 1.01454 0.92463 1.00638 1.23057 0.96430 1.01358 0.98294 1.42184 1.18163 1.06660 1.30263 1.21356 1.08413 0.83428 1.19179 0.89165 0.84671 0.82894 0.79179 0.86856 0.89005 0.85667 0.85840 0.90079 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.30 10.87 21.76 0.24 -38.06 16 2 C 0.04 1.82 5.20 85.12 0.44 2.26 16 3 Si 0.99 34.19 29.59 68.60 2.03 36.22 16 4 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 5 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 6 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 7 C -0.47 -23.33 9.04 23.32 0.21 -23.12 16 8 H 0.09 4.17 7.90 -2.91 -0.02 4.15 16 9 C 0.08 4.35 5.69 -20.10 -0.11 4.24 16 10 C -0.10 -5.03 8.86 23.83 0.21 -4.82 16 11 C -0.11 -5.08 10.07 22.36 0.23 -4.86 16 12 C -0.05 -2.28 6.76 38.90 0.26 -2.01 16 13 C -0.06 -2.79 12.01 84.41 1.01 -1.78 16 14 N -0.48 -21.87 10.72 -184.98 -1.98 -23.85 16 15 C 0.12 5.43 7.53 137.67 1.04 6.47 16 16 C -0.09 -3.35 6.13 -11.54 -0.07 -3.42 16 17 C -0.14 -3.89 10.13 30.62 0.31 -3.58 16 18 C -0.15 -4.40 10.24 30.61 0.31 -4.09 16 19 N -0.31 -15.23 2.93 -333.83 -0.98 -16.21 16 20 C -0.20 -10.25 10.62 84.27 0.90 -9.36 16 21 H 0.30 12.43 8.30 -92.71 -0.77 11.66 16 22 H 0.14 6.52 6.25 -2.91 -0.02 6.50 16 23 H 0.15 5.63 8.06 -2.91 -0.02 5.61 16 24 H 0.19 6.80 8.06 -2.91 -0.02 6.77 16 25 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 26 H 0.09 2.85 7.87 -2.39 -0.02 2.83 16 27 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 29 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.14 6.46 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -59.32 264.78 5.18 -54.14 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 1.14 Total: 31.84 kcal Atomic # 6 Polarization: -48.80 SS G_CDS: 4.74 Total: -44.07 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -2.73 Total: -78.13 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Total: -59.32 5.18 -54.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214886870.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.074 kcal (2) G-P(sol) polarization free energy of solvation -59.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds