Wall clock time and date at job start Mon Mar 30 2020 03:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39928 * 126.03489 * 2 1 4 4 N 1.30867 * 108.24238 * 179.97438 * 3 2 1 5 5 N 1.40087 * 108.21960 * 359.97438 * 4 3 2 6 6 C 1.40203 * 126.05434 * 180.02562 * 5 4 3 7 7 C 1.39243 * 119.94653 * 184.99677 * 6 5 4 8 8 C 1.38489 * 120.43463 * 179.97438 * 7 6 5 9 9 C 1.37674 * 120.32249 * 0.02562 * 8 7 6 10 10 C 1.40737 * 119.87395 * 0.02562 * 9 8 7 11 11 C 1.41416 * 120.20980 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00105 * 24.31112 * 11 10 9 13 13 C 1.39937 * 119.99743 * 204.30568 * 11 10 9 14 14 N 1.30827 * 120.00101 * 17.70809 * 13 11 10 15 15 Si 1.86802 * 119.99912 * 197.70881 * 13 11 10 16 16 H 1.48499 * 109.47011 * 90.00045 * 15 13 11 17 17 H 1.48498 * 109.46822 * 210.00082 * 15 13 11 18 18 H 1.48499 * 109.46872 * 330.00094 * 15 13 11 19 19 C 1.38213 * 119.94173 * 4.72347 * 6 5 4 20 20 C 1.35220 * 107.89563 * 359.97438 * 5 4 3 21 21 H 1.09003 * 109.47569 * 270.03108 * 1 2 3 22 22 H 1.09012 * 109.46883 * 30.03212 * 1 2 3 23 23 H 1.09004 * 109.47111 * 150.02777 * 1 2 3 24 24 H 1.07994 * 125.87461 * 359.94840 * 3 2 1 25 25 H 1.08005 * 119.78130 * 0.02562 * 7 6 5 26 26 H 1.08007 * 119.83988 * 180.02562 * 8 7 6 27 27 H 1.07997 * 120.07003 * 180.02562 * 9 8 7 28 28 H 0.97000 * 119.99941 * 179.97438 * 14 13 11 29 29 H 1.07999 * 120.15972 * 359.97438 * 19 6 5 30 30 H 1.07999 * 126.14960 * 180.26570 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3301 1.1315 0.0000 4 7 3.5762 0.7316 0.0006 5 7 3.5867 -0.6692 0.0015 6 6 4.7263 -1.4859 0.0028 7 6 4.5912 -2.8678 -0.1014 8 6 5.7100 -3.6840 -0.1016 9 6 6.9693 -3.1373 0.0018 10 6 7.1211 -1.7422 0.1089 11 6 8.4113 -1.1731 0.2161 12 1 9.2700 -1.7063 -0.1640 13 6 8.5751 0.0812 0.8146 14 7 7.6292 0.5727 1.5730 15 14 10.1445 1.0538 0.5306 16 1 9.9800 1.9211 -0.6635 17 1 10.4262 1.8971 1.7199 18 1 11.2746 0.1162 0.3095 19 6 5.9822 -0.9175 0.1019 20 6 2.3030 -1.0943 0.0021 21 1 -0.3634 0.0006 1.0277 22 1 -0.3633 0.8898 -0.5144 23 1 -0.3633 -0.8903 -0.5134 24 1 1.9948 2.1581 -0.0008 25 1 3.6074 -3.3060 -0.1834 26 1 5.5941 -4.7547 -0.1834 27 1 7.8390 -3.7775 0.0008 28 1 7.7429 1.4420 1.9881 29 1 6.0881 0.1546 0.1779 30 1 1.9724 -2.1224 0.0069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214887143.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:41 Heat of formation + Delta-G solvation = 89.264718 kcal Electronic energy + Delta-G solvation = -14781.852308 eV Core-core repulsion = 12350.203824 eV Total energy + Delta-G solvation = -2431.648484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83227 -37.56786 -34.02501 -32.76712 -31.22596 -29.65683 -28.64302 -25.83049 -25.33924 -22.32591 -21.30909 -19.72530 -19.25018 -17.75281 -16.14833 -15.13901 -14.78628 -14.63457 -14.25099 -13.51651 -12.97762 -12.93311 -12.75900 -12.56897 -12.44721 -11.76563 -11.60241 -11.26642 -11.16261 -10.81462 -10.59003 -10.18163 -9.89482 -9.65051 -9.52164 -9.13591 -8.28602 -7.60291 -7.03142 -6.80433 -4.49273 1.93720 2.72740 3.04251 3.07640 3.08267 3.21307 3.22077 3.30273 3.87437 4.52605 5.11846 5.27719 5.53709 5.53846 5.76666 5.88977 5.96095 6.13796 6.19757 6.25478 6.49325 6.62524 6.88085 6.89097 7.04207 7.17062 7.28542 7.62132 7.65065 7.78519 7.94763 8.19380 8.37127 8.50752 8.75792 8.78445 10.08734 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.030387 B = 0.007877 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.220271 B = 3554.018528 C = 4386.435795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.257 4.257 3 C 0.031 3.969 4 N -0.278 5.278 5 N -0.291 5.291 6 C 0.149 3.851 7 C -0.263 4.263 8 C -0.072 4.072 9 C -0.231 4.231 10 C 0.120 3.880 11 C -0.456 4.456 12 H 0.083 0.917 13 C 0.074 3.926 14 N -0.779 5.779 15 Si 0.912 3.088 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.261 1.261 19 C -0.154 4.154 20 C 0.050 3.950 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.178 0.822 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.284 0.716 29 H 0.138 0.862 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 -0.344 -1.721 7.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.268 4.268 3 C -0.154 4.154 4 N -0.098 5.098 5 N -0.064 5.064 6 C 0.059 3.941 7 C -0.285 4.285 8 C -0.091 4.091 9 C -0.251 4.251 10 C 0.116 3.884 11 C -0.485 4.485 12 H 0.101 0.899 13 C -0.146 4.146 14 N -0.402 5.402 15 Si 0.736 3.264 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.185 1.185 19 C -0.175 4.175 20 C -0.096 4.096 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.194 0.806 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.156 0.844 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.173 0.182 -1.552 6.367 hybrid contribution -0.270 0.207 0.037 0.342 sum -6.442 0.388 -1.515 6.629 Atomic orbital electron populations 1.19962 0.89754 1.01551 1.00991 1.20037 0.96704 0.91967 1.18126 1.23778 0.90305 0.99479 1.01877 1.77527 1.20609 0.88905 1.22769 1.46009 1.04451 1.04133 1.51854 1.17591 0.83962 0.88234 1.04314 1.19923 0.97781 0.90533 1.20224 1.20302 0.92437 0.97107 0.99221 1.21055 0.95515 0.94870 1.13637 1.17475 0.92876 0.90477 0.87547 1.19618 0.93847 1.01476 1.33532 0.89854 1.25993 0.98439 0.97499 0.92666 1.69808 1.33234 1.17295 1.19912 0.86251 0.81495 0.79760 0.78918 1.19104 1.20176 1.18477 1.21209 0.88781 1.01359 1.06147 1.22280 0.84298 0.99895 1.03102 0.92612 0.92286 0.92571 0.80552 0.88708 0.88325 0.88336 0.90440 0.84392 0.81484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.37 36.00 0.37 -0.39 16 2 C -0.26 -4.25 6.10 -105.03 -0.64 -4.89 16 3 C 0.03 0.57 11.96 -17.33 -0.21 0.36 16 4 N -0.28 -6.29 11.86 30.64 0.36 -5.93 16 5 N -0.29 -6.59 3.80 -10.75 -0.04 -6.63 16 6 C 0.15 3.68 6.67 -83.66 -0.56 3.12 16 7 C -0.26 -5.84 9.47 -39.12 -0.37 -6.21 16 8 C -0.07 -1.56 10.01 -39.69 -0.40 -1.96 16 9 C -0.23 -5.53 9.79 -38.84 -0.38 -5.91 16 10 C 0.12 3.19 5.57 -106.85 -0.60 2.59 16 11 C -0.46 -11.96 9.05 -37.74 -0.34 -12.30 16 12 H 0.08 2.07 7.91 -52.49 -0.41 1.65 16 13 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 14 N -0.78 -20.51 10.96 55.55 0.61 -19.90 16 15 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 18 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 19 C -0.15 -4.15 8.30 -38.69 -0.32 -4.48 16 20 C 0.05 0.92 10.70 -17.10 -0.18 0.74 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.18 2.48 8.06 -52.49 -0.42 2.05 16 25 H 0.09 1.82 6.74 -52.48 -0.35 1.46 16 26 H 0.10 1.80 8.06 -52.48 -0.42 1.37 16 27 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 29 H 0.14 3.97 5.80 -52.49 -0.30 3.66 16 30 H 0.17 2.58 7.05 -52.49 -0.37 2.21 16 LS Contribution 265.07 15.07 3.99 3.99 Total: -1.00 -29.19 265.07 -6.93 -36.12 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.11 Total: 6.29 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -3.71 Total: -27.56 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.93 Total: -32.46 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.19 -6.93 -36.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214887143.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.380 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds