Wall clock time and date at job start Mon Mar 30 2020 03:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39928 * 126.03489 * 2 1 4 4 N 1.30867 * 108.24238 * 179.97438 * 3 2 1 5 5 N 1.40087 * 108.21960 * 359.97438 * 4 3 2 6 6 C 1.40203 * 126.05434 * 180.02562 * 5 4 3 7 7 C 1.39243 * 119.94653 * 184.99677 * 6 5 4 8 8 C 1.38489 * 120.43463 * 179.97438 * 7 6 5 9 9 C 1.37674 * 120.32249 * 0.02562 * 8 7 6 10 10 C 1.40737 * 119.87395 * 0.02562 * 9 8 7 11 11 C 1.41416 * 120.20980 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00105 * 24.31112 * 11 10 9 13 13 C 1.39937 * 119.99743 * 204.30568 * 11 10 9 14 14 N 1.30827 * 120.00101 * 17.70809 * 13 11 10 15 15 Si 1.86802 * 119.99912 * 197.70881 * 13 11 10 16 16 H 1.48499 * 109.47011 * 90.00045 * 15 13 11 17 17 H 1.48498 * 109.46822 * 210.00082 * 15 13 11 18 18 H 1.48499 * 109.46872 * 330.00094 * 15 13 11 19 19 C 1.38213 * 119.94173 * 4.72347 * 6 5 4 20 20 C 1.35220 * 107.89563 * 359.97438 * 5 4 3 21 21 H 1.09003 * 109.47569 * 270.03108 * 1 2 3 22 22 H 1.09012 * 109.46883 * 30.03212 * 1 2 3 23 23 H 1.09004 * 109.47111 * 150.02777 * 1 2 3 24 24 H 1.07994 * 125.87461 * 359.94840 * 3 2 1 25 25 H 1.08005 * 119.78130 * 0.02562 * 7 6 5 26 26 H 1.08007 * 119.83988 * 180.02562 * 8 7 6 27 27 H 1.07997 * 120.07003 * 180.02562 * 9 8 7 28 28 H 0.97000 * 119.99941 * 179.97438 * 14 13 11 29 29 H 1.07999 * 120.15972 * 359.97438 * 19 6 5 30 30 H 1.07999 * 126.14960 * 180.26570 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3301 1.1315 0.0000 4 7 3.5762 0.7316 0.0006 5 7 3.5867 -0.6692 0.0015 6 6 4.7263 -1.4859 0.0028 7 6 4.5912 -2.8678 -0.1014 8 6 5.7100 -3.6840 -0.1016 9 6 6.9693 -3.1373 0.0018 10 6 7.1211 -1.7422 0.1089 11 6 8.4113 -1.1731 0.2161 12 1 9.2700 -1.7063 -0.1640 13 6 8.5751 0.0812 0.8146 14 7 7.6292 0.5727 1.5730 15 14 10.1445 1.0538 0.5306 16 1 9.9800 1.9211 -0.6635 17 1 10.4262 1.8971 1.7199 18 1 11.2746 0.1162 0.3095 19 6 5.9822 -0.9175 0.1019 20 6 2.3030 -1.0943 0.0021 21 1 -0.3634 0.0006 1.0277 22 1 -0.3633 0.8898 -0.5144 23 1 -0.3633 -0.8903 -0.5134 24 1 1.9948 2.1581 -0.0008 25 1 3.6074 -3.3060 -0.1834 26 1 5.5941 -4.7547 -0.1834 27 1 7.8390 -3.7775 0.0008 28 1 7.7429 1.4420 1.9881 29 1 6.0881 0.1546 0.1779 30 1 1.9724 -2.1224 0.0069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214887143.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:41 Heat of formation + Delta-G solvation = 73.143826 kcal Electronic energy + Delta-G solvation = -14782.551363 eV Core-core repulsion = 12350.203824 eV Total energy + Delta-G solvation = -2432.347538 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.33283 -39.35882 -35.83829 -34.34368 -32.64686 -31.47900 -30.28134 -27.36449 -26.98633 -23.95117 -23.04389 -21.38593 -20.74135 -19.50527 -17.91269 -16.86372 -16.55767 -16.15177 -15.79149 -15.23385 -14.64130 -14.33389 -14.05226 -13.90441 -13.87458 -13.44866 -13.02048 -12.85798 -12.71137 -12.59127 -12.21081 -11.85351 -11.63318 -11.31345 -11.25929 -10.88372 -9.77436 -9.48278 -8.79313 -8.58176 -6.45228 0.30129 0.93063 1.34421 1.40725 1.49184 1.61418 1.67889 1.86454 2.16077 2.68110 3.63686 3.75626 3.96676 4.31100 4.42887 4.53362 4.58878 4.80454 4.83732 5.02912 5.04163 5.13379 5.20657 5.26267 5.34465 5.37242 5.75081 5.83446 5.92924 6.03558 6.07694 6.35422 6.65779 6.82362 6.85098 6.93219 8.25312 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.030387 B = 0.007877 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.220271 B = 3554.018528 C = 4386.435795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.243 4.243 3 C 0.036 3.964 4 N -0.340 5.340 5 N -0.320 5.320 6 C 0.145 3.855 7 C -0.257 4.257 8 C -0.065 4.065 9 C -0.245 4.245 10 C 0.090 3.910 11 C -0.493 4.493 12 H 0.086 0.914 13 C 0.031 3.969 14 N -0.819 5.819 15 Si 0.985 3.015 16 H -0.266 1.266 17 H -0.268 1.268 18 H -0.250 1.250 19 C -0.193 4.193 20 C 0.036 3.964 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.212 0.788 25 H 0.132 0.868 26 H 0.143 0.857 27 H 0.111 0.889 28 H 0.287 0.713 29 H 0.108 0.892 30 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 -1.161 -2.092 9.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.254 4.254 3 C -0.149 4.149 4 N -0.160 5.160 5 N -0.095 5.095 6 C 0.054 3.946 7 C -0.279 4.279 8 C -0.084 4.084 9 C -0.265 4.265 10 C 0.087 3.913 11 C -0.522 4.522 12 H 0.105 0.895 13 C -0.185 4.185 14 N -0.443 5.443 15 Si 0.805 3.195 16 H -0.191 1.191 17 H -0.193 1.193 18 H -0.173 1.173 19 C -0.215 4.215 20 C -0.107 4.107 21 H 0.088 0.912 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.229 0.771 25 H 0.150 0.850 26 H 0.161 0.839 27 H 0.129 0.871 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.090 -0.654 -1.925 8.341 hybrid contribution 0.049 0.422 0.133 0.445 sum -8.041 -0.232 -1.792 8.242 Atomic orbital electron populations 1.20093 0.85953 1.03431 1.02433 1.20634 0.98979 0.90506 1.15321 1.24548 0.89376 1.01687 0.99317 1.77493 1.23419 0.89728 1.25358 1.46007 1.05071 1.04109 1.54333 1.17851 0.84198 0.89672 1.02928 1.20394 0.99744 0.89507 1.18218 1.20781 0.91244 0.99342 0.97029 1.21325 0.97311 0.94018 1.13824 1.17864 0.93201 0.91990 0.88273 1.19906 0.94119 1.02997 1.35165 0.89545 1.26896 1.01815 0.98045 0.91724 1.69909 1.35461 1.17790 1.21185 0.85155 0.77353 0.78163 0.78782 1.19096 1.19265 1.17293 1.21038 0.90480 1.00181 1.09768 1.22995 0.82978 1.02031 1.02690 0.91232 0.90391 0.90809 0.77104 0.85045 0.83886 0.87054 0.90240 0.87375 0.78526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.19 10.37 71.24 0.74 -0.45 16 2 C -0.24 -7.39 6.10 -20.13 -0.12 -7.51 16 3 C 0.04 1.27 11.96 85.25 1.02 2.29 16 4 N -0.34 -15.71 11.86 -56.97 -0.68 -16.38 16 5 N -0.32 -14.57 3.80 -187.91 -0.71 -15.28 16 6 C 0.14 7.24 6.67 38.04 0.25 7.49 16 7 C -0.26 -10.98 9.47 22.57 0.21 -10.77 16 8 C -0.07 -2.72 10.01 22.20 0.22 -2.49 16 9 C -0.24 -11.77 9.79 22.75 0.22 -11.55 16 10 C 0.09 4.99 5.57 -21.30 -0.12 4.87 16 11 C -0.49 -27.08 9.05 23.46 0.21 -26.86 16 12 H 0.09 4.47 7.91 -2.91 -0.02 4.44 16 13 C 0.03 1.62 5.14 85.25 0.44 2.06 16 14 N -0.82 -45.60 10.96 21.82 0.24 -45.36 16 15 Si 0.99 39.52 29.59 68.60 2.03 41.55 16 16 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 17 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 18 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 19 C -0.19 -10.97 8.30 22.85 0.19 -10.78 16 20 C 0.04 1.26 10.70 83.50 0.89 2.16 16 21 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.21 5.45 8.06 -2.91 -0.02 5.43 16 25 H 0.13 4.55 6.74 -2.91 -0.02 4.53 16 26 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 27 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 28 H 0.29 14.66 8.30 -92.71 -0.77 13.90 16 29 H 0.11 6.70 5.80 -2.91 -0.02 6.68 16 30 H 0.20 5.38 7.05 -2.91 -0.02 5.36 16 Total: -1.00 -67.89 265.07 6.19 -61.71 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 1.14 Total: 25.31 kcal Atomic # 6 Polarization: -55.72 SS G_CDS: 4.16 Total: -51.55 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -1.15 Total: -77.02 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -67.89 6.19 -61.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214887143.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.853 kcal (2) G-P(sol) polarization free energy of solvation -67.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds