Wall clock time and date at job start Mon Mar 30 2020 03:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30496 * 125.72254 * 2 1 4 4 C 1.34163 * 109.36738 * 179.97438 * 3 2 1 5 5 C 1.34631 * 108.21845 * 0.02562 * 4 3 2 6 6 N 1.35944 * 125.72749 * 180.02562 * 2 1 3 7 7 C 1.39679 * 126.48371 * 0.02562 * 6 2 1 8 8 C 1.39380 * 119.82607 * 309.73261 * 7 6 2 9 9 C 1.36419 * 120.17931 * 179.71968 * 8 7 6 10 10 C 1.40840 * 119.81294 * 0.52602 * 9 8 7 11 11 C 1.41189 * 120.16906 * 179.72559 * 10 9 8 12 12 H 1.08007 * 120.00278 * 155.15641 * 11 10 9 13 13 C 1.39928 * 120.00234 * 335.15457 * 11 10 9 14 14 N 1.30859 * 119.99675 * 342.16649 * 13 11 10 15 15 Si 1.86797 * 120.00410 * 162.16460 * 13 11 10 16 16 H 1.48497 * 109.47533 * 94.65466 * 15 13 11 17 17 H 1.48503 * 109.47239 * 214.65805 * 15 13 11 18 18 H 1.48507 * 109.46955 * 334.65798 * 15 13 11 19 19 C 1.40843 * 119.66256 * 359.74793 * 10 9 8 20 20 C 1.36416 * 119.81527 * 359.97438 * 19 10 9 21 21 H 1.08995 * 109.47333 * 269.99707 * 1 2 3 22 22 H 1.09005 * 109.47216 * 30.00208 * 1 2 3 23 23 H 1.09004 * 109.46710 * 149.99742 * 1 2 3 24 24 H 1.08006 * 125.89030 * 179.97438 * 4 3 2 25 25 H 1.07997 * 126.58366 * 180.25719 * 5 4 3 26 26 H 1.08007 * 119.90877 * 359.97438 * 8 7 6 27 27 H 1.07996 * 120.09087 * 180.27639 * 9 8 7 28 28 H 0.97001 * 120.00082 * 179.97438 * 14 13 11 29 29 H 1.07997 * 120.09598 * 179.97438 * 19 10 9 30 30 H 1.07999 * 119.91526 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2689 1.0594 0.0000 4 6 3.5562 0.6816 0.0006 5 6 3.6000 -0.6640 0.0004 6 7 2.3008 -1.1036 -0.0005 7 6 1.8740 -2.4336 -0.0016 8 6 0.9260 -2.8582 0.9277 9 6 0.4998 -4.1542 0.9294 10 6 1.0289 -5.0664 -0.0041 11 6 0.5975 -6.4108 -0.0053 12 1 0.6654 -6.9990 -0.9086 13 6 0.0820 -6.9813 1.1638 14 7 0.3111 -6.4181 2.3226 15 14 -0.9332 -8.5465 1.0705 16 1 -0.0540 -9.7212 1.2990 17 1 -1.9931 -8.5118 2.1100 18 1 -1.5596 -8.6509 -0.2720 19 6 1.9908 -4.6309 -0.9362 20 6 2.4024 -3.3304 -0.9286 21 1 -0.3634 -0.0001 1.0276 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 4.4101 1.3429 0.0003 25 1 4.4876 -1.2791 0.0046 26 1 0.5245 -2.1583 1.6457 27 1 -0.2381 -4.4805 1.6472 28 1 -0.0465 -6.8133 3.1331 29 1 2.4015 -5.3246 -1.6548 30 1 3.1397 -2.9946 -1.6429 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214887370.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:53 Heat of formation + Delta-G solvation = 58.468055 kcal Electronic energy + Delta-G solvation = -14836.220562 eV Core-core repulsion = 12403.236634 eV Total energy + Delta-G solvation = -2432.983927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.02562 -39.53489 -36.08021 -34.16618 -32.74838 -31.46474 -30.77045 -27.88138 -26.87764 -23.56962 -23.18070 -21.75919 -20.65378 -19.38860 -18.59264 -17.24607 -16.45982 -15.91914 -15.47380 -15.30803 -14.91479 -14.50608 -14.16047 -13.98808 -13.69727 -13.53908 -13.34900 -13.15430 -12.86597 -12.73478 -12.45069 -11.78794 -11.56132 -11.23828 -10.98150 -10.78872 -9.67587 -9.39253 -9.13402 -8.77260 -6.45461 0.49479 0.98625 1.27327 1.40331 1.51355 1.56415 2.12180 2.16992 2.18009 2.57949 3.54767 3.65861 4.04429 4.20830 4.24911 4.47981 4.54718 4.68329 4.83724 4.89808 4.96738 5.00949 5.04215 5.17496 5.42115 5.52692 5.54495 5.85807 5.93082 6.02420 6.12918 6.44293 6.59656 6.77397 6.88083 7.18095 8.18053 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.054672 B = 0.006256 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.019823 B = 4474.401608 C = 4684.929695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.181 3.819 3 N -0.524 5.524 4 C -0.047 4.047 5 C -0.070 4.070 6 N -0.381 5.381 7 C -0.049 4.049 8 C -0.079 4.079 9 C -0.176 4.176 10 C 0.090 3.910 11 C -0.477 4.477 12 H 0.087 0.913 13 C 0.037 3.963 14 N -0.810 5.810 15 Si 0.985 3.015 16 H -0.262 1.262 17 H -0.266 1.266 18 H -0.256 1.256 19 C -0.227 4.227 20 C -0.070 4.070 21 H 0.084 0.916 22 H 0.099 0.901 23 H 0.070 0.930 24 H 0.195 0.805 25 H 0.185 0.815 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.294 0.706 29 H 0.113 0.887 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 2.733 -1.866 3.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.080 4.080 3 N -0.244 5.244 4 C -0.195 4.195 5 C -0.203 4.203 6 N -0.057 5.057 7 C -0.141 4.141 8 C -0.099 4.099 9 C -0.196 4.196 10 C 0.087 3.913 11 C -0.504 4.504 12 H 0.105 0.895 13 C -0.180 4.180 14 N -0.434 5.434 15 Si 0.805 3.195 16 H -0.187 1.187 17 H -0.190 1.190 18 H -0.179 1.179 19 C -0.247 4.247 20 C -0.089 4.089 21 H 0.103 0.897 22 H 0.118 0.882 23 H 0.089 0.911 24 H 0.212 0.788 25 H 0.202 0.798 26 H 0.123 0.877 27 H 0.131 0.869 28 H 0.105 0.895 29 H 0.131 0.869 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.437 3.386 -1.604 3.772 hybrid contribution 0.250 -1.477 0.228 1.515 sum -0.187 1.909 -1.376 2.360 Atomic orbital electron populations 1.20211 0.83737 1.04103 1.03871 1.24058 0.96854 0.81136 1.05905 1.70167 1.03170 1.28754 1.22325 1.22641 0.94969 0.93004 1.08891 1.23192 0.87752 0.97015 1.12363 1.42816 1.06533 1.05271 1.51066 1.17209 1.09449 0.82251 1.05149 1.20380 0.97133 0.95994 0.96355 1.20903 1.03621 0.91740 1.03288 1.18069 0.88784 0.93854 0.90632 1.19980 1.36028 0.96676 0.97755 0.89517 1.26856 0.94702 1.02649 0.93828 1.69858 1.33921 1.39811 0.99834 0.85135 0.78131 0.76514 0.79722 1.18677 1.19009 1.17924 1.20809 1.02897 0.95577 1.05424 1.20359 0.99034 0.93198 0.96320 0.89701 0.88193 0.91063 0.78838 0.79762 0.87668 0.86938 0.89491 0.86875 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.87 9.25 71.23 0.66 -1.22 16 2 C 0.18 6.86 7.78 137.84 1.07 7.93 16 3 N -0.52 -19.91 11.24 -187.49 -2.11 -22.02 16 4 C -0.05 -1.59 11.85 83.51 0.99 -0.60 16 5 C -0.07 -2.46 11.28 83.03 0.94 -1.53 16 6 N -0.38 -15.07 2.86 -336.34 -0.96 -16.04 16 7 C -0.05 -2.11 5.69 38.44 0.22 -1.89 16 8 C -0.08 -3.52 8.67 22.12 0.19 -3.33 16 9 C -0.18 -8.56 8.64 22.48 0.19 -8.37 16 10 C 0.09 4.45 5.57 -21.28 -0.12 4.33 16 11 C -0.48 -23.33 9.04 23.40 0.21 -23.12 16 12 H 0.09 4.03 7.91 -2.91 -0.02 4.01 16 13 C 0.04 1.71 5.13 85.25 0.44 2.14 16 14 N -0.81 -38.89 10.97 21.83 0.24 -38.65 16 15 Si 0.98 34.49 29.60 68.60 2.03 36.52 16 16 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 17 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 18 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 19 C -0.23 -10.29 9.74 22.48 0.22 -10.07 16 20 C -0.07 -2.95 9.61 22.12 0.21 -2.73 16 21 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 22 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 23 H 0.07 2.27 7.53 -2.39 -0.02 2.25 16 24 H 0.19 4.99 8.06 -2.91 -0.02 4.96 16 25 H 0.19 5.51 8.06 -2.91 -0.02 5.48 16 26 H 0.11 4.36 7.68 -2.91 -0.02 4.33 16 27 H 0.11 5.68 6.18 -2.91 -0.02 5.67 16 28 H 0.29 12.67 8.30 -92.71 -0.77 11.90 16 29 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 30 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -56.08 264.37 5.56 -50.52 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 1.14 Total: 28.11 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 5.23 Total: -38.45 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -2.83 Total: -76.70 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Total: -56.08 5.56 -50.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214887370.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.992 kcal (2) G-P(sol) polarization free energy of solvation -56.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds