Wall clock time and date at job start Mon Mar 30 2020 02:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31016 * 1 3 3 Si 1.86801 * 119.99665 * 2 1 4 4 H 1.48498 * 109.47192 * 274.98262 * 3 2 1 5 5 H 1.48500 * 109.46848 * 34.98279 * 3 2 1 6 6 H 1.48500 * 109.46944 * 154.97766 * 3 2 1 7 7 C 1.39714 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99927 * 173.98544 * 7 2 1 9 9 C 1.41225 * 119.99740 * 354.24971 * 7 2 1 10 10 C 1.39098 * 126.43561 * 185.31967 * 9 7 2 11 11 N 1.36101 * 106.36478 * 180.02562 * 10 9 7 12 12 C 1.46504 * 126.10510 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47020 * 90.00149 * 12 11 10 14 14 C 1.38232 * 120.00586 * 269.72836 * 13 12 11 15 15 C 1.38241 * 120.00260 * 179.76768 * 14 13 12 16 16 C 1.38235 * 119.99528 * 0.50565 * 15 14 13 17 17 C 1.38234 * 120.00321 * 359.74358 * 16 15 14 18 18 C 1.38235 * 119.99858 * 0.02562 * 17 16 15 19 19 C 1.35960 * 107.78612 * 0.02562 * 11 10 9 20 20 N 1.30153 * 109.59554 * 359.71748 * 19 11 10 21 21 H 0.96993 * 120.00388 * 359.97438 * 1 2 3 22 22 H 1.07993 * 126.81747 * 359.97438 * 10 9 7 23 23 H 1.08996 * 109.46962 * 210.00348 * 12 11 10 24 24 H 1.09007 * 109.47087 * 330.00669 * 12 11 10 25 25 H 1.08005 * 119.99912 * 359.97438 * 14 13 12 26 26 H 1.07997 * 119.99804 * 180.23437 * 15 14 13 27 27 H 1.07997 * 119.99343 * 179.73131 * 16 15 14 28 28 H 1.08001 * 119.99717 * 179.97438 * 17 16 15 29 29 H 1.07995 * 119.99804 * 179.97438 * 18 17 16 30 30 H 1.07994 * 125.20364 * 179.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.3862 2.1073 -1.3948 5 1 1.4980 2.6199 0.8027 6 1 3.5903 1.4122 0.5922 7 6 2.0088 -1.2099 -0.0005 8 1 3.0843 -1.2124 -0.0985 9 6 1.3080 -2.4299 0.1215 10 6 1.8696 -3.6970 0.2400 11 7 0.8297 -4.5704 0.3302 12 6 0.9337 -6.0252 0.4689 13 6 0.9782 -6.3884 1.9307 14 6 2.1929 -6.4766 2.5845 15 6 2.2333 -6.8051 3.9267 16 6 1.0595 -7.0556 4.6125 17 6 -0.1550 -6.9725 3.9575 18 6 -0.1956 -6.6393 2.6165 19 6 -0.3228 -3.8519 0.2673 20 7 -0.0424 -2.5864 0.1496 21 1 -0.4850 0.8400 0.0004 22 1 2.9218 -3.9396 0.2563 23 1 0.0687 -6.4973 0.0033 24 1 1.8442 -6.3726 -0.0196 25 1 3.1103 -6.2856 2.0475 26 1 3.1821 -6.8703 4.4384 27 1 1.0913 -7.3165 5.6600 28 1 -1.0720 -7.1687 4.4933 29 1 -1.1444 -6.5748 2.1047 30 1 -1.3187 -4.2673 0.3126 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220650718.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:13 Heat of formation + Delta-G solvation = 83.710140 kcal Electronic energy + Delta-G solvation = -14642.042922 eV Core-core repulsion = 12210.153573 eV Total energy + Delta-G solvation = -2431.889348 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.05889 -38.81956 -33.98438 -32.65278 -30.79899 -30.11015 -28.35351 -26.04767 -24.33366 -22.46724 -21.33528 -19.65870 -19.30686 -17.01684 -16.51930 -15.38009 -15.20293 -14.95214 -14.57218 -13.75637 -13.32587 -13.03220 -12.58898 -12.37137 -12.33585 -12.16157 -11.65660 -11.13560 -10.92692 -10.90767 -10.81974 -10.19024 -9.85707 -9.06762 -8.80652 -8.72230 -7.93642 -7.88937 -6.91043 -6.12547 -3.90199 1.41440 1.51698 3.18924 3.30581 3.34815 3.59583 3.82089 4.27387 4.41758 4.73505 4.88811 4.97123 5.08495 5.20667 5.30666 5.56637 5.71773 5.77390 5.91317 5.98794 6.07237 6.13485 6.51820 6.54206 6.58605 6.71235 7.09644 7.31769 7.59740 7.88307 8.00577 8.51273 8.85743 9.22232 9.41969 10.11868 10.82139 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.039253 B = 0.006163 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.152515 B = 4542.277814 C = 4716.514368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.076 3.924 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.456 4.456 8 H 0.073 0.927 9 C 0.195 3.805 10 C -0.226 4.226 11 N -0.466 5.466 12 C 0.156 3.844 13 C -0.096 4.096 14 C -0.098 4.098 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.124 4.124 18 C -0.103 4.103 19 C 0.138 3.862 20 N -0.458 5.458 21 H 0.265 0.735 22 H 0.138 0.862 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -13.247 5.425 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.091 0.909 9 C 0.072 3.928 10 C -0.352 4.352 11 N -0.158 5.158 12 C 0.032 3.968 13 C -0.098 4.098 14 C -0.117 4.117 15 C -0.141 4.141 16 C -0.141 4.141 17 C -0.142 4.142 18 C -0.122 4.122 19 C -0.142 4.142 20 N -0.180 5.180 21 H 0.075 0.925 22 H 0.156 0.844 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.139 0.861 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.255 -12.564 5.353 13.659 hybrid contribution 0.973 0.088 0.202 0.998 sum 1.229 -12.476 5.555 13.712 Atomic orbital electron populations 1.70106 1.06627 1.26749 1.36692 1.25752 0.94699 1.00059 0.93687 0.86489 0.80412 0.82262 0.78436 1.20114 1.20669 1.19073 1.18441 0.93557 0.88633 1.48532 0.90890 1.18457 0.87520 0.91163 0.95682 1.22262 0.91152 0.90347 1.31453 1.44791 1.07507 1.04204 1.59253 1.20329 1.03158 0.81661 0.91690 1.20273 0.93551 0.99035 0.96907 1.21053 0.97532 0.98399 0.94724 1.21112 0.98224 1.00253 0.94522 1.21113 0.92770 1.00635 0.99605 1.21094 0.97794 1.00608 0.94679 1.21036 0.97693 0.98860 0.94599 1.24931 0.90454 0.89015 1.09786 1.71200 1.15610 1.11751 1.19405 0.92485 0.84448 0.89868 0.89922 0.86145 0.86234 0.86391 0.86237 0.86147 0.81389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -23.09 11.96 55.54 0.66 -22.43 16 2 C 0.08 2.16 5.49 -17.35 -0.10 2.06 16 3 Si 0.90 20.79 29.56 -169.99 -5.03 15.76 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.46 -13.47 9.37 -37.90 -0.36 -13.83 16 8 H 0.07 2.04 7.85 -52.48 -0.41 1.63 16 9 C 0.19 5.70 6.68 -84.58 -0.57 5.13 16 10 C -0.23 -5.67 11.63 -15.34 -0.18 -5.85 16 11 N -0.47 -10.01 2.73 -118.62 -0.32 -10.34 16 12 C 0.16 2.45 6.25 -5.19 -0.03 2.42 16 13 C -0.10 -1.46 5.46 -104.63 -0.57 -2.03 16 14 C -0.10 -1.43 9.70 -39.58 -0.38 -1.82 16 15 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 16 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 17 C -0.12 -1.57 10.05 -39.58 -0.40 -1.96 16 18 C -0.10 -1.44 9.70 -39.58 -0.38 -1.83 16 19 C 0.14 3.28 12.52 -89.82 -1.12 2.15 16 20 N -0.46 -13.24 9.53 -11.99 -0.11 -13.36 16 21 H 0.26 7.24 8.30 -40.82 -0.34 6.90 16 22 H 0.14 3.16 8.06 -52.49 -0.42 2.74 16 23 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 24 H 0.08 1.18 8.08 -51.92 -0.42 0.76 16 25 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 26 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.17 3.27 8.06 -52.49 -0.42 2.85 16 LS Contribution 270.77 15.07 4.08 4.08 Total: -1.00 -34.02 270.77 -8.95 -42.97 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.35 Total: 2.76 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -4.88 Total: -19.45 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.23 Total: -46.12 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.02 -8.95 -42.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220650718.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.676 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds